data_J4R
#

_chem_comp.id                                   J4R
_chem_comp.name                                 "1-[2-methyl-5-[6-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-4-(1-methylpyrazol-4-yl)-1H-pyrrol-3-yl]ethanone"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H27 N7 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-06
_chem_comp.pdbx_modified_date                   2022-04-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       417.507
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J4R
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EIK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J4R  C10  C1   C  0  1  Y  N  N   6.224   7.892  -0.587   0.887   0.537  -0.258  C10  J4R   1  
J4R  C12  C2   C  0  1  Y  N  N   4.524   7.112  -2.224   2.707  -1.055  -0.287  C12  J4R   2  
J4R  C14  C3   C  0  1  Y  N  N   7.889   6.800  -1.312  -0.869  -0.754  -0.144  C14  J4R   3  
J4R  C1   C4   C  0  1  N  N  N   1.163   7.984  -1.116   5.403  -1.076   0.742  C1   J4R   4  
J4R  C11  C5   C  0  1  Y  N  N   5.832   7.074  -1.766   1.346  -0.793  -0.237  C11  J4R   5  
J4R  C16  C6   C  0  1  Y  N  N   9.265   6.246  -1.469  -2.269  -1.189  -0.071  C16  J4R   6  
J4R  C17  C7   C  0  1  Y  N  N  10.498   6.708  -0.807  -3.376  -0.359  -0.048  C17  J4R   7  
J4R  C18  C8   C  0  1  Y  N  N  11.545   5.810  -1.329  -4.544  -1.250   0.029  C18  J4R   8  
J4R  C19  C9   C  0  1  Y  N  N  10.831   4.898  -2.283  -4.046  -2.540   0.046  C19  J4R   9  
J4R  C21  C10  C  0  1  N  N  N  11.458   3.792  -3.092  -4.874  -3.797   0.119  C21  J4R  10  
J4R  C22  C11  C  0  1  N  N  N  13.007   5.791  -1.026  -5.952  -0.851   0.077  C22  J4R  11  
J4R  C23  C12  C  0  1  N  N  N  13.715   7.110  -0.939  -6.635  -0.660   1.407  C23  J4R  12  
J4R  C25  C13  C  0  1  Y  N  N  10.652   7.809   0.191  -3.383   1.121  -0.092  C25  J4R  13  
J4R  C26  C14  C  0  1  Y  N  N  11.220   7.603   1.434  -3.912   1.922  -1.125  C26  J4R  14  
J4R  C29  C15  C  0  1  Y  N  N  10.236   9.103  -0.046  -2.883   1.961   0.863  C29  J4R  15  
J4R  C3   C16  C  0  1  N  N  N   2.023   7.895  -3.492   5.750   0.986  -0.478  C3   J4R  16  
J4R  C30  C17  C  0  1  N  N  N  10.436  11.103   1.586  -2.704   4.442   1.161  C30  J4R  17  
J4R  C31  C18  C  0  1  N  N  N  -1.311   7.683  -3.920   9.105  -0.429   0.486  C31  J4R  18  
J4R  C4   C19  C  0  1  N  N  N   0.925   6.850  -3.661   7.239   0.657  -0.611  C4   J4R  19  
J4R  C6   C20  C  0  1  N  N  N  -0.080   8.281  -1.949   6.892  -1.405   0.609  C6   J4R  20  
J4R  C7   C21  C  0  1  Y  N  N   3.592   7.919  -1.582   3.606  -0.003  -0.357  C7   J4R  21  
J4R  C8   C22  C  0  1  Y  N  N   3.954   8.686  -0.475   3.149   1.313  -0.374  C8   J4R  22  
J4R  C9   C23  C  0  1  Y  N  N   5.257   8.680   0.023   1.811   1.585  -0.324  C9   J4R  23  
J4R  N13  N1   N  0  1  Y  N  N   6.930   6.412  -2.170   0.220  -1.591  -0.165  N13  J4R  24  
J4R  N15  N2   N  0  1  Y  N  N   7.531   7.669  -0.359  -0.467   0.496  -0.199  N15  J4R  25  
J4R  N2   N3   N  0  1  N  N  N   2.275   7.937  -2.057   4.979  -0.263  -0.407  N2   J4R  26  
J4R  N20  N4   N  0  1  Y  N  N   9.507   5.218  -2.306  -2.706  -2.493  -0.019  N20  J4R  27  
J4R  N27  N5   N  0  1  Y  N  N  11.172   8.823   2.021  -3.730   3.174  -0.801  N27  J4R  28  
J4R  N28  N6   N  0  1  Y  N  N  10.572   9.706   1.101  -3.087   3.225   0.442  N28  J4R  29  
J4R  N5   N7   N  0  1  N  N  N  -0.312   7.221  -2.946   7.663  -0.155   0.538  N5   J4R  30  
J4R  O24  O1   O  0  1  N  N  N  13.588   4.730  -0.873  -6.568  -0.674  -0.953  O24  J4R  31  
J4R  H1   H1   H  0  1  N  N  N   4.230   6.517  -3.076   3.064  -2.074  -0.270  H1   J4R  32  
J4R  H2   H2   H  0  1  N  N  N   1.056   7.018  -0.602   4.827  -2.001   0.765  H2   J4R  33  
J4R  H3   H3   H  0  1  N  N  N   1.324   8.779  -0.373   5.235  -0.518   1.663  H3   J4R  34  
J4R  H4   H4   H  0  1  N  N  N  11.788   4.189  -4.063  -5.058  -4.170  -0.888  H4   J4R  35  
J4R  H5   H5   H  0  1  N  N  N  12.324   3.386  -2.549  -4.339  -4.552   0.695  H5   J4R  36  
J4R  H6   H6   H  0  1  N  N  N  10.720   2.993  -3.255  -5.826  -3.578   0.604  H6   J4R  37  
J4R  H7   H7   H  0  1  N  N  N  14.781   6.941  -0.726  -5.907  -0.775   2.210  H7   J4R  38  
J4R  H8   H8   H  0  1  N  N  N  13.612   7.645  -1.895  -7.071   0.338   1.451  H8   J4R  39  
J4R  H9   H9   H  0  1  N  N  N  13.271   7.712  -0.132  -7.422  -1.406   1.521  H9   J4R  40  
J4R  H10  H10  H  0  1  N  N  N  11.611   6.683   1.843  -4.384   1.563  -2.027  H10  J4R  41  
J4R  H11  H11  H  0  1  N  N  N   9.764   9.519  -0.924  -2.411   1.665   1.788  H11  J4R  42  
J4R  H12  H12  H  0  1  N  N  N   2.931   7.596  -4.037   5.586   1.567   0.429  H12  J4R  43  
J4R  H13  H13  H  0  1  N  N  N   1.684   8.876  -3.855   5.426   1.564  -1.344  H13  J4R  44  
J4R  H14  H14  H  0  1  N  N  N  10.844  11.179   2.605  -1.696   4.735   0.869  H14  J4R  45  
J4R  H15  H15  H  0  1  N  N  N  10.990  11.779   0.917  -3.401   5.244   0.915  H15  J4R  46  
J4R  H16  H16  H  0  1  N  N  N   9.373  11.386   1.595  -2.732   4.254   2.234  H16  J4R  47  
J4R  H17  H17  H  0  1  N  N  N  -2.236   7.961  -3.393   9.654   0.513   0.502  H17  J4R  48  
J4R  H18  H18  H  0  1  N  N  N  -0.919   8.558  -4.460   9.392  -1.031   1.348  H18  J4R  49  
J4R  H19  H19  H  0  1  N  N  N  -1.525   6.876  -4.636   9.340  -0.971  -0.430  H19  J4R  50  
J4R  H20  H20  H  0  1  N  N  N   0.697   6.745  -4.732   7.407   0.099  -1.532  H20  J4R  51  
J4R  H21  H21  H  0  1  N  N  N   1.287   5.889  -3.267   7.815   1.582  -0.635  H21  J4R  52  
J4R  H22  H22  H  0  1  N  N  N   0.056   9.241  -2.469   7.215  -1.983   1.475  H22  J4R  53  
J4R  H23  H23  H  0  1  N  N  N  -0.953   8.346  -1.283   7.057  -1.986  -0.298  H23  J4R  54  
J4R  H24  H24  H  0  1  N  N  N   3.208   9.299   0.008   3.858   2.125  -0.428  H24  J4R  55  
J4R  H25  H25  H  0  1  N  N  N   5.513   9.286   0.880   1.467   2.608  -0.337  H25  J4R  56  
J4R  H26  H26  H  0  1  N  N  N   7.014   5.775  -2.936   0.201  -2.560  -0.134  H26  J4R  57  
J4R  H28  H28  H  0  1  N  N  N   8.816   4.757  -2.863  -2.126  -3.271  -0.022  H28  J4R  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J4R  C31  N5   SING  N  N   1  
J4R  C4   C3   SING  N  N   2  
J4R  C4   N5   SING  N  N   3  
J4R  C3   N2   SING  N  N   4  
J4R  C21  C19  SING  N  N   5  
J4R  N5   C6   SING  N  N   6  
J4R  N20  C19  SING  Y  N   7  
J4R  N20  C16  SING  Y  N   8  
J4R  C19  C18  DOUB  Y  N   9  
J4R  C12  C11  DOUB  Y  N  10  
J4R  C12  C7   SING  Y  N  11  
J4R  N13  C11  SING  Y  N  12  
J4R  N13  C14  SING  Y  N  13  
J4R  N2   C7   SING  N  N  14  
J4R  N2   C1   SING  N  N  15  
J4R  C6   C1   SING  N  N  16  
J4R  C11  C10  SING  Y  N  17  
J4R  C7   C8   DOUB  Y  N  18  
J4R  C16  C14  SING  N  N  19  
J4R  C16  C17  DOUB  Y  N  20  
J4R  C18  C22  SING  N  N  21  
J4R  C18  C17  SING  Y  N  22  
J4R  C14  N15  DOUB  Y  N  23  
J4R  C22  C23  SING  N  N  24  
J4R  C22  O24  DOUB  N  N  25  
J4R  C17  C25  SING  N  N  26  
J4R  C10  N15  SING  Y  N  27  
J4R  C10  C9   DOUB  Y  N  28  
J4R  C8   C9   SING  Y  N  29  
J4R  C29  C25  DOUB  Y  N  30  
J4R  C29  N28  SING  Y  N  31  
J4R  C25  C26  SING  Y  N  32  
J4R  N28  C30  SING  N  N  33  
J4R  N28  N27  SING  Y  N  34  
J4R  C26  N27  DOUB  Y  N  35  
J4R  C12  H1   SING  N  N  36  
J4R  C1   H2   SING  N  N  37  
J4R  C1   H3   SING  N  N  38  
J4R  C21  H4   SING  N  N  39  
J4R  C21  H5   SING  N  N  40  
J4R  C21  H6   SING  N  N  41  
J4R  C23  H7   SING  N  N  42  
J4R  C23  H8   SING  N  N  43  
J4R  C23  H9   SING  N  N  44  
J4R  C26  H10  SING  N  N  45  
J4R  C29  H11  SING  N  N  46  
J4R  C3   H12  SING  N  N  47  
J4R  C3   H13  SING  N  N  48  
J4R  C30  H14  SING  N  N  49  
J4R  C30  H15  SING  N  N  50  
J4R  C30  H16  SING  N  N  51  
J4R  C31  H17  SING  N  N  52  
J4R  C31  H18  SING  N  N  53  
J4R  C31  H19  SING  N  N  54  
J4R  C4   H20  SING  N  N  55  
J4R  C4   H21  SING  N  N  56  
J4R  C6   H22  SING  N  N  57  
J4R  C6   H23  SING  N  N  58  
J4R  C8   H24  SING  N  N  59  
J4R  C9   H25  SING  N  N  60  
J4R  N13  H26  SING  N  N  61  
J4R  N20  H28  SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J4R  InChI             InChI                 1.03   "InChI=1S/C23H27N7O/c1-14-20(15(2)31)21(16-12-24-29(4)13-16)22(25-14)23-26-18-6-5-17(11-19(18)27-23)30-9-7-28(3)8-10-30/h5-6,11-13,25H,7-10H2,1-4H3,(H,26,27)"  
J4R  InChIKey          InChI                 1.03   RWHIEFHJMQOKMA-UHFFFAOYSA-N  
J4R  SMILES_CANONICAL  CACTVS                3.385  "CN1CCN(CC1)c2ccc3nc([nH]c3c2)c4[nH]c(C)c(C(C)=O)c4c5cnn(C)c5"  
J4R  SMILES            CACTVS                3.385  "CN1CCN(CC1)c2ccc3nc([nH]c3c2)c4[nH]c(C)c(C(C)=O)c4c5cnn(C)c5"  
J4R  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c([nH]1)c2[nH]c3cc(ccc3n2)N4CCN(CC4)C)c5cnn(c5)C)C(=O)C"  
J4R  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c([nH]1)c2[nH]c3cc(ccc3n2)N4CCN(CC4)C)c5cnn(c5)C)C(=O)C"  
#
_pdbx_chem_comp_identifier.comp_id          J4R
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "1-[2-methyl-5-[6-(4-methylpiperazin-1-yl)-1~{H}-benzimidazol-2-yl]-4-(1-methylpyrazol-4-yl)-1~{H}-pyrrol-3-yl]ethanone"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J4R  "Create component"  2021-04-06  PDBJ  
J4R  "Initial release"   2022-04-06  RCSB  
##
