data_M8R
# 
_chem_comp.id                                    M8R 
_chem_comp.name                                  "(2~{S})-2-(9~{H}-fluoren-9-ylmethoxycarbonylamino)-3-(4-oxidanylidene-5~{H}-pyrimidin-2-yl)propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H19 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-23 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        405.403 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M8R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8HU2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M8R C10 C1  C 0 1 N N N N N N -7.352  -33.976 8.577  -3.563 -2.970 -0.252 C10 M8R 1  
M8R C17 C2  C 0 1 N N N N N N -12.646 -32.476 8.443  1.514  -1.184 0.063  C17 M8R 2  
M8R C20 C3  C 0 1 Y N N N N N -11.094 -33.628 11.144 1.732  1.727  -1.326 C20 M8R 3  
M8R C21 C4  C 0 1 Y N N N N N -10.937 -33.779 12.521 1.976  3.087  -1.254 C21 M8R 4  
M8R C22 C5  C 0 1 Y N N N N N -12.029 -34.201 13.318 3.157  3.552  -0.703 C22 M8R 5  
M8R C24 C6  C 0 1 Y N N N N N -14.246 -34.237 9.119  3.994  -1.049 -0.134 C24 M8R 6  
M8R C26 C7  C 0 1 Y N N N N N -13.425 -34.319 11.333 3.852  1.290  -0.282 C26 M8R 7  
M8R C28 C8  C 0 1 Y N N N N N -16.489 -34.776 8.389  5.800  -2.322 0.786  C28 M8R 8  
M8R C02 C9  C 0 1 N N N N N N -8.501  -29.226 5.384  -2.897 2.283  1.084  C02 M8R 9  
M8R C04 C10 C 0 1 N N N N N N -8.951  -29.630 4.127  -3.898 3.367  0.724  C04 M8R 10 
M8R C05 C11 C 0 1 N N N N N N -8.721  -30.949 3.763  -5.108 2.913  -0.070 C05 M8R 11 
M8R C07 C12 C 0 1 N N N N N N -7.691  -31.345 5.781  -4.253 0.766  -0.018 C07 M8R 12 
M8R C08 C13 C 0 1 N N N N N N -6.982  -32.319 6.718  -4.463 -0.667 -0.438 C08 M8R 13 
M8R C09 C14 C 0 1 N N S N N N -8.003  -33.190 7.452  -3.295 -1.520 0.060  C09 M8R 14 
M8R C14 C15 C 0 1 N N N N N N -10.390 -32.578 7.776  -0.868 -1.311 -0.017 C14 M8R 15 
M8R C18 C16 C 0 1 N N N N N N -12.813 -33.842 9.120  2.684  -0.676 -0.782 C18 M8R 16 
M8R C19 C17 C 0 1 Y N N N N N -12.333 -33.894 10.537 2.664  0.832  -0.843 C19 M8R 17 
M8R C23 C18 C 0 1 Y N N N N N -13.267 -34.465 12.723 4.097  2.664  -0.224 C23 M8R 18 
M8R C25 C19 C 0 1 Y N N N N N -14.603 -34.526 10.440 4.672  0.132  0.153  C25 M8R 19 
M8R C27 C20 C 0 1 Y N N N N N -15.187 -34.366 8.095  4.557  -2.268 0.181  C27 M8R 20 
M8R C29 C21 C 0 1 Y N N N N N -16.852 -35.059 9.718  6.481  -1.153 1.076  C29 M8R 21 
M8R C30 C22 C 0 1 Y N N N N N -15.907 -34.941 10.734 5.926  0.071  0.763  C30 M8R 22 
M8R N01 N1  N 0 1 N N N N N N -7.889  -30.098 6.170  -3.174 1.037  0.664  N01 M8R 23 
M8R N06 N2  N 0 1 N N N N N N -8.100  -31.769 4.589  -5.187 1.650  -0.373 N06 M8R 24 
M8R N13 N3  N 0 1 N N N N N N -8.992  -32.319 8.034  -2.061 -1.097 -0.607 N13 M8R 25 
M8R O03 O1  O 0 1 N N N N N N -8.668  -28.106 5.750  -1.891 2.530  1.717  O03 M8R 26 
M8R O11 O2  O 0 1 N N N N N N -7.284  -33.473 9.728  -4.647 -3.576 0.256  O11 M8R 27 
M8R O12 O3  O 0 1 N N N N N N -6.904  -35.131 8.354  -2.804 -3.585 -0.963 O12 M8R 28 
M8R O15 O4  O 0 1 N N N N N N -10.712 -33.260 6.862  -0.816 -1.855 1.068  O15 M8R 29 
M8R O16 O5  O 0 1 N N N N N N -11.338 -32.012 8.624  0.266  -0.922 -0.631 O16 M8R 30 
M8R H1  H1  H 0 1 N N N N N N -13.352 -31.760 8.888  1.621  -2.257 0.224  H1  M8R 31 
M8R H2  H2  H 0 1 N N N N N N -12.853 -32.574 7.367  1.510  -0.670 1.025  H2  M8R 32 
M8R H3  H3  H 0 1 N N N N N N -10.259 -33.305 10.540 0.809  1.366  -1.756 H3  M8R 33 
M8R H4  H4  H 0 1 N N N N N N -9.981  -33.574 12.981 1.243  3.786  -1.628 H4  M8R 34 
M8R H5  H5  H 0 1 N N N N N N -11.906 -34.319 14.384 3.344  4.614  -0.650 H5  M8R 35 
M8R H6  H6  H 0 1 N N N N N N -17.216 -34.876 7.597  6.239  -3.277 1.033  H6  M8R 36 
M8R H7  H7  H 0 1 N N N N N N -8.460  -28.990 3.379  -4.249 3.826  1.648  H7  M8R 37 
M8R H8  H8  H 0 1 N N N N N N -10.038 -29.463 4.096  -3.379 4.130  0.143  H8  M8R 38 
M8R H9  H9  H 0 1 N N N N N N -9.052  -31.306 2.799  -5.875 3.611  -0.373 H9  M8R 39 
M8R H10 H10 H 0 1 N N N N N N -6.311  -32.963 6.131  -5.393 -1.039 -0.009 H10 M8R 40 
M8R H11 H11 H 0 1 N N N N N N -6.394  -31.751 7.454  -4.516 -0.722 -1.525 H11 M8R 41 
M8R H12 H12 H 0 1 N N N N N N -8.470  -33.886 6.739  -3.186 -1.394 1.138  H12 M8R 42 
M8R H13 H13 H 0 1 N N N N N N -12.247 -34.581 8.535  2.629  -1.095 -1.787 H13 M8R 43 
M8R H14 H14 H 0 1 N N N N N N -14.102 -34.781 13.331 5.016  3.031  0.209  H14 M8R 44 
M8R H15 H15 H 0 1 N N N N N N -14.907 -34.148 7.075  4.027  -3.182 -0.045 H15 M8R 45 
M8R H16 H16 H 0 1 N N N N N N -17.861 -35.367 9.950  7.451  -1.199 1.548  H16 M8R 46 
M8R H17 H17 H 0 1 N N N N N N -16.181 -35.171 11.753 6.462  0.981  0.990  H17 M8R 47 
M8R H18 H18 H 0 1 N N N N N N -8.716  -31.548 8.607  -2.103 -0.663 -1.473 H18 M8R 48 
M8R H19 H19 H 0 1 N N N N N N -6.868  -34.089 10.319 -4.777 -4.507 0.028  H19 M8R 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M8R C05 C04 SING N N 1  
M8R C05 N06 DOUB N N 2  
M8R C04 C02 SING N N 3  
M8R N06 C07 SING N N 4  
M8R C02 O03 DOUB N N 5  
M8R C02 N01 SING N N 6  
M8R C07 N01 DOUB N N 7  
M8R C07 C08 SING N N 8  
M8R C08 C09 SING N N 9  
M8R O15 C14 DOUB N N 10 
M8R C09 N13 SING N N 11 
M8R C09 C10 SING N N 12 
M8R C14 N13 SING N N 13 
M8R C14 O16 SING N N 14 
M8R C27 C28 DOUB Y N 15 
M8R C27 C24 SING Y N 16 
M8R O12 C10 DOUB N N 17 
M8R C28 C29 SING Y N 18 
M8R C17 O16 SING N N 19 
M8R C17 C18 SING N N 20 
M8R C10 O11 SING N N 21 
M8R C24 C18 SING N N 22 
M8R C24 C25 DOUB Y N 23 
M8R C18 C19 SING N N 24 
M8R C29 C30 DOUB Y N 25 
M8R C25 C30 SING Y N 26 
M8R C25 C26 SING N N 27 
M8R C19 C20 SING Y N 28 
M8R C19 C26 DOUB Y N 29 
M8R C20 C21 DOUB Y N 30 
M8R C26 C23 SING Y N 31 
M8R C21 C22 SING Y N 32 
M8R C23 C22 DOUB Y N 33 
M8R C17 H1  SING N N 34 
M8R C17 H2  SING N N 35 
M8R C20 H3  SING N N 36 
M8R C21 H4  SING N N 37 
M8R C22 H5  SING N N 38 
M8R C28 H6  SING N N 39 
M8R C04 H7  SING N N 40 
M8R C04 H8  SING N N 41 
M8R C05 H9  SING N N 42 
M8R C08 H10 SING N N 43 
M8R C08 H11 SING N N 44 
M8R C09 H12 SING N N 45 
M8R C18 H13 SING N N 46 
M8R C23 H14 SING N N 47 
M8R C27 H15 SING N N 48 
M8R C29 H16 SING N N 49 
M8R C30 H17 SING N N 50 
M8R N13 H18 SING N N 51 
M8R O11 H19 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M8R InChI            InChI                1.06  "InChI=1S/C22H19N3O5/c26-20-9-10-23-19(25-20)11-18(21(27)28)24-22(29)30-12-17-15-7-3-1-5-13(15)14-6-2-4-8-16(14)17/h1-8,10,17-18H,9,11-12H2,(H,24,29)(H,27,28)/t18-/m0/s1" 
M8R InChIKey         InChI                1.06  SRYLOGZQEQKDOT-SFHVURJKSA-N                                                                                                                                                
M8R SMILES_CANONICAL CACTVS               3.385 "OC(=O)[C@H](CC1=NC(=O)CC=N1)NC(=O)OCC2c3ccccc3c4ccccc24"                                                                                                                  
M8R SMILES           CACTVS               3.385 "OC(=O)[CH](CC1=NC(=O)CC=N1)NC(=O)OCC2c3ccccc3c4ccccc24"                                                                                                                   
M8R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)-c3ccccc3C2COC(=O)N[C@@H](CC4=NC(=O)CC=N4)C(=O)O"                                                                                                              
M8R SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)-c3ccccc3C2COC(=O)NC(CC4=NC(=O)CC=N4)C(=O)O"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           M8R 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-(9~{H}-fluoren-9-ylmethoxycarbonylamino)-3-(4-oxidanylidene-5~{H}-pyrimidin-2-yl)propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M8R "Create component" 2022-12-23 PDBJ 
M8R "Initial release"  2024-01-17 RCSB 
# 
