data_V8R
# 
_chem_comp.id                                    V8R 
_chem_comp.name                                  "(5~{S},6~{R},7~{S},8~{S})-6,7,8-tris(oxidanyl)-2-[2-(3-phenoxyphenyl)ethyl]-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-5-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H22 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-10 
_chem_comp.pdbx_modified_date                    2023-09-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        410.420 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V8R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JYG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V8R O30  O1  O 0 1 N N N -14.737 6.450  20.813 -2.973 -2.817 1.798  O30  V8R 1  
V8R C25  C1  C 0 1 N N N -15.419 5.565  20.206 -3.847 -2.451 0.847  C25  V8R 2  
V8R O29  O2  O 0 1 N N N -16.666 5.441  20.300 -4.236 -3.262 0.041  O29  V8R 3  
V8R C6   C2  C 0 1 N N S -14.676 4.585  19.362 -4.342 -1.029 0.786  C6   V8R 4  
V8R C1   C3  C 0 1 N N R -14.744 4.997  17.904 -5.317 -0.875 -0.387 C1   V8R 5  
V8R O27  O3  O 0 1 N N N -13.967 6.193  17.817 -6.527 -1.579 -0.096 O27  V8R 6  
V8R N5   N1  N 0 1 Y N N -15.179 3.197  19.532 -3.210 -0.123 0.583  N5   V8R 7  
V8R C9   C4  C 0 1 Y N N -15.587 2.575  20.659 -1.990 -0.161 1.191  C9   V8R 8  
V8R C8   C5  C 0 1 Y N N -15.955 1.296  20.323 -1.275 0.866  0.690  C8   V8R 9  
V8R N7   N2  N 0 1 Y N N -15.757 1.140  19.003 -2.043 1.513  -0.201 N7   V8R 10 
V8R C4   C6  C 0 1 Y N N -15.276 2.324  18.529 -3.203 0.928  -0.271 C4   V8R 11 
V8R C3   C7  C 0 1 N N S -14.917 2.625  17.129 -4.376 1.316  -1.140 C3   V8R 12 
V8R O28  O4  O 0 1 N N N -14.239 1.487  16.595 -4.563 2.732  -1.093 O28  V8R 13 
V8R C2   C8  C 0 1 N N S -14.093 3.921  17.046 -5.629 0.609  -0.601 C2   V8R 14 
V8R O26  O5  O 0 1 N N N -13.987 4.349  15.663 -6.698 0.741  -1.541 O26  V8R 15 
V8R C10  C9  C 0 1 N N N -16.498 0.244  21.244 0.139  1.227  1.066  C10  V8R 16 
V8R C11  C10 C 0 1 N N N -18.014 0.185  21.132 1.003  1.283  -0.196 C11  V8R 17 
V8R C12  C11 C 0 1 Y N N -18.538 -0.791 22.176 2.418  1.643  0.180  C12  V8R 18 
V8R C17  C12 C 0 1 Y N N -19.059 -2.033 21.872 2.803  2.970  0.229  C17  V8R 19 
V8R C16  C13 C 0 1 Y N N -19.545 -2.856 22.900 4.099  3.304  0.574  C16  V8R 20 
V8R C15  C14 C 0 1 Y N N -19.483 -2.454 24.229 5.014  2.312  0.869  C15  V8R 21 
V8R C14  C15 C 0 1 Y N N -18.933 -1.214 24.520 4.631  0.979  0.820  C14  V8R 22 
V8R C13  C16 C 0 1 Y N N -18.481 -0.405 23.509 3.327  0.647  0.480  C13  V8R 23 
V8R O18  O6  O 0 1 N N N -18.811 -0.708 25.787 5.529  0.002  1.110  O18  V8R 24 
V8R C19  C17 C 0 1 Y N N -19.765 -0.825 26.759 5.921  -0.822 0.104  C19  V8R 25 
V8R C24  C18 C 0 1 Y N N -21.100 -1.085 26.462 5.512  -0.573 -1.198 C24  V8R 26 
V8R C23  C19 C 0 1 Y N N -22.029 -1.207 27.499 5.913  -1.413 -2.220 C23  V8R 27 
V8R C22  C20 C 0 1 Y N N -21.647 -1.056 28.824 6.720  -2.501 -1.945 C22  V8R 28 
V8R C21  C21 C 0 1 Y N N -20.304 -0.775 29.118 7.129  -2.752 -0.648 C21  V8R 29 
V8R C20  C22 C 0 1 Y N N -19.373 -0.656 28.077 6.737  -1.912 0.376  C20  V8R 30 
V8R H4   H1  H 0 1 N N N -15.315 6.991  21.338 -2.683 -3.739 1.797  H4   V8R 31 
V8R H6   H2  H 0 1 N N N -13.619 4.605  19.667 -4.849 -0.778 1.717  H6   V8R 32 
V8R H1   H3  H 0 1 N N N -15.787 5.160  17.595 -4.867 -1.286 -1.290 H1   V8R 33 
V8R HO27 H4  H 0 0 N N N -14.367 6.870  18.350 -7.191 -1.525 -0.796 HO27 V8R 34 
V8R H9   H5  H 0 1 N N N -15.618 3.007  21.648 -1.661 -0.876 1.930  H9   V8R 35 
V8R H3   H6  H 0 1 N N N -15.845 2.786  16.562 -4.191 1.005  -2.168 H3   V8R 36 
V8R HO28 H7  H 0 0 N N N -14.795 0.721  16.674 -3.801 3.241  -1.402 HO28 V8R 37 
V8R H2   H8  H 0 1 N N N -13.088 3.718  17.444 -5.920 1.060  0.348  H2   V8R 38 
V8R HO26 H9  H 0 0 N N N -13.579 3.662  15.149 -6.948 1.656  -1.725 HO26 V8R 39 
V8R H102 H10 H 0 0 N N N -16.074 -0.734 20.970 0.148  2.200  1.556  H102 V8R 40 
V8R H101 H11 H 0 0 N N N -16.219 0.487  22.280 0.538  0.474  1.746  H101 V8R 41 
V8R H111 H12 H 0 0 N N N -18.438 1.184  21.312 0.994  0.309  -0.686 H111 V8R 42 
V8R H112 H13 H 0 0 N N N -18.299 -0.159 20.127 0.605  2.035  -0.876 H112 V8R 43 
V8R H17  H14 H 0 1 N N N -19.092 -2.370 20.847 2.089  3.747  -0.002 H17  V8R 44 
V8R H16  H15 H 0 1 N N N -19.974 -3.816 22.654 4.397  4.341  0.612  H16  V8R 45 
V8R H15  H16 H 0 1 N N N -19.854 -3.092 25.017 6.027  2.573  1.138  H15  V8R 46 
V8R H13  H17 H 0 1 N N N -18.068 0.562  23.757 3.025  -0.389 0.445  H13  V8R 47 
V8R H24  H18 H 0 1 N N N -21.416 -1.192 25.435 4.881  0.276  -1.413 H24  V8R 48 
V8R H23  H19 H 0 1 N N N -23.061 -1.422 27.265 5.595  -1.219 -3.233 H23  V8R 49 
V8R H22  H20 H 0 1 N N N -22.373 -1.153 29.618 7.032  -3.156 -2.745 H22  V8R 50 
V8R H21  H21 H 0 1 N N N -19.989 -0.651 30.143 7.760  -3.603 -0.436 H21  V8R 51 
V8R H20  H22 H 0 1 N N N -18.341 -0.431 28.304 7.060  -2.106 1.388  H20  V8R 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V8R C1  C2   SING N N 1  
V8R C1  C6   SING N N 2  
V8R O27 C1   SING N N 3  
V8R C2  C3   SING N N 4  
V8R O26 C2   SING N N 5  
V8R C3  C4   SING N N 6  
V8R O28 C3   SING N N 7  
V8R C4  N5   SING Y N 8  
V8R C4  N7   DOUB Y N 9  
V8R N5  C6   SING N N 10 
V8R C9  N5   SING Y N 11 
V8R C6  C25  SING N N 12 
V8R N7  C8   SING Y N 13 
V8R C8  C9   DOUB Y N 14 
V8R C10 C8   SING N N 15 
V8R C11 C10  SING N N 16 
V8R C12 C11  SING N N 17 
V8R C12 C13  DOUB Y N 18 
V8R C17 C12  SING Y N 19 
V8R C13 C14  SING Y N 20 
V8R C14 C15  DOUB Y N 21 
V8R O18 C14  SING N N 22 
V8R C15 C16  SING Y N 23 
V8R C16 C17  DOUB Y N 24 
V8R C19 O18  SING N N 25 
V8R C19 C20  DOUB Y N 26 
V8R C24 C19  SING Y N 27 
V8R C20 C21  SING Y N 28 
V8R C21 C22  DOUB Y N 29 
V8R C22 C23  SING Y N 30 
V8R C23 C24  DOUB Y N 31 
V8R O29 C25  DOUB N N 32 
V8R C25 O30  SING N N 33 
V8R O30 H4   SING N N 34 
V8R C6  H6   SING N N 35 
V8R C1  H1   SING N N 36 
V8R O27 HO27 SING N N 37 
V8R C9  H9   SING N N 38 
V8R C3  H3   SING N N 39 
V8R O28 HO28 SING N N 40 
V8R C2  H2   SING N N 41 
V8R O26 HO26 SING N N 42 
V8R C10 H102 SING N N 43 
V8R C10 H101 SING N N 44 
V8R C11 H111 SING N N 45 
V8R C11 H112 SING N N 46 
V8R C17 H17  SING N N 47 
V8R C16 H16  SING N N 48 
V8R C15 H15  SING N N 49 
V8R C13 H13  SING N N 50 
V8R C24 H24  SING N N 51 
V8R C23 H23  SING N N 52 
V8R C22 H22  SING N N 53 
V8R C21 H21  SING N N 54 
V8R C20 H20  SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V8R InChI            InChI                1.06  "InChI=1S/C22H22N2O6/c25-18-17(22(28)29)24-12-14(23-21(24)20(27)19(18)26)10-9-13-5-4-8-16(11-13)30-15-6-2-1-3-7-15/h1-8,11-12,17-20,25-27H,9-10H2,(H,28,29)/t17-,18+,19-,20+/m0/s1" 
V8R InChIKey         InChI                1.06  FCQUVPLCJSCNPK-ZGXWSNOMSA-N                                                                                                                                                         
V8R SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@H](O)[C@H](n2cc(CCc3cccc(Oc4ccccc4)c3)nc2[C@@H]1O)C(O)=O"                                                                                                                
V8R SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](n2cc(CCc3cccc(Oc4ccccc4)c3)nc2[CH]1O)C(O)=O"                                                                                                                     
V8R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2cccc(c2)CCc3cn4c(n3)[C@@H]([C@H]([C@@H]([C@H]4C(=O)O)O)O)O"                                                                                                           
V8R SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2cccc(c2)CCc3cn4c(n3)C(C(C(C4C(=O)O)O)O)O"                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           V8R 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(5~{S},6~{R},7~{S},8~{S})-6,7,8-tris(oxidanyl)-2-[2-(3-phenoxyphenyl)ethyl]-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V8R "Create component" 2023-07-10 PDBJ 
V8R "Initial release"  2023-09-20 RCSB 
# 
