data_WFR
# 
_chem_comp.id                                    WFR 
_chem_comp.name                                  "propan-2-yl (2S)-2-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-ethynyl-3-hydroxy-4-methyloxolan-2-yl]methoxy}(phenoxy)phosphoryl]amino}propanoate (non-preferred name)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H30 N3 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-06 
_chem_comp.pdbx_modified_date                    2022-12-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        535.483 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WFR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8E57 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WFR C02 C1  C 0 1 N N R 146.791 160.970 149.139 0.108  1.880  -0.588 C02 WFR 1  
WFR C03 C2  C 0 1 N N S 146.745 159.762 150.314 1.003  2.590  -1.627 C03 WFR 2  
WFR C04 C3  C 0 1 N N R 145.270 159.493 150.452 2.424  2.495  -1.026 C04 WFR 3  
WFR C05 C4  C 0 1 N N R 144.826 159.682 148.851 2.219  1.738  0.304  C05 WFR 4  
WFR C07 C5  C 0 1 N N N 148.200 161.043 148.432 -0.997 1.087  -1.290 C07 WFR 5  
WFR C09 C6  C 0 1 N N N 144.638 160.583 151.417 2.971  3.839  -0.779 C09 WFR 6  
WFR C10 C7  C 0 1 N N N 145.136 157.995 150.934 3.347  1.705  -1.956 C10 WFR 7  
WFR C11 C8  C 0 1 N N N 143.547 157.545 147.997 4.449  1.296  1.164  C11 WFR 8  
WFR C13 C9  C 0 1 N N N 144.817 155.781 146.542 5.456  -0.808 1.030  C13 WFR 9  
WFR C14 C10 C 0 1 N N N 146.053 156.695 146.686 4.298  -1.309 0.388  C14 WFR 10 
WFR C15 C11 C 0 1 N N N 146.026 157.896 147.405 3.258  -0.477 0.166  C15 WFR 11 
WFR C23 C12 C 0 1 N N S 150.196 165.682 147.484 -2.036 -2.612 -0.038 C23 WFR 12 
WFR C24 C13 C 0 1 N N N 151.347 164.724 146.869 -0.913 -3.478 -0.548 C24 WFR 13 
WFR C25 C14 C 0 1 N N N 150.607 166.008 148.957 -3.086 -3.488 0.648  C25 WFR 14 
WFR C28 C15 C 0 1 N N N 152.135 162.433 147.222 0.865  -5.038 -0.253 C28 WFR 15 
WFR C29 C16 C 0 1 N N N 152.444 162.790 148.731 2.165  -4.232 -0.266 C29 WFR 16 
WFR C30 C17 C 0 1 N N N 151.622 160.935 147.132 1.052  -6.295 0.599  C30 WFR 17 
WFR C31 C18 C 0 1 Y N N 145.355 163.758 147.595 -4.668 0.699  0.982  C31 WFR 18 
WFR C32 C19 C 0 1 Y N N 145.760 163.293 146.211 -3.957 1.528  1.838  C32 WFR 19 
WFR C33 C20 C 0 1 Y N N 144.742 162.930 145.180 -4.500 2.732  2.241  C33 WFR 20 
WFR C34 C21 C 0 1 Y N N 143.301 163.013 145.485 -5.751 3.112  1.793  C34 WFR 21 
WFR C35 C22 C 0 1 Y N N 142.853 163.460 146.827 -6.463 2.288  0.941  C35 WFR 22 
WFR C36 C23 C 0 1 Y N N 143.859 163.832 147.884 -5.924 1.083  0.534  C36 WFR 23 
WFR C37 C24 C 0 1 N N N 144.153 161.415 152.150 3.407  4.911  -0.582 C37 WFR 24 
WFR N06 N1  N 0 1 N N N 144.828 158.372 148.080 3.343  0.832  0.554  N06 WFR 25 
WFR N12 N2  N 0 1 N N N 143.581 156.277 147.235 5.498  0.488  1.402  N12 WFR 26 
WFR N22 N3  N 0 1 N N N 148.757 165.121 147.388 -2.653 -1.897 -1.163 N22 WFR 27 
WFR O01 O1  O 0 1 N N N 145.761 160.638 148.206 0.998  0.988  0.118  O01 WFR 28 
WFR O08 O2  O 0 1 N N N 147.196 160.189 151.584 0.613  3.957  -1.773 O08 WFR 29 
WFR O16 O3  O 0 1 N N N 144.814 154.724 145.916 6.407  -1.539 1.240  O16 WFR 30 
WFR O17 O4  O 0 1 N N N 142.511 157.919 148.557 4.503  2.463  1.501  O17 WFR 31 
WFR O18 O5  O 0 1 N N N 148.382 162.251 147.659 -1.880 0.534  -0.313 O18 WFR 32 
WFR O20 O6  O 0 1 N N N 146.331 164.112 148.612 -4.134 -0.484 0.580  O20 WFR 33 
WFR O21 O7  O 0 1 N N N 148.646 163.849 149.751 -3.893 0.275  -1.815 O21 WFR 34 
WFR O26 O8  O 0 1 N N N 152.421 165.222 146.580 -0.654 -3.499 -1.728 O26 WFR 35 
WFR O27 O9  O 0 1 N N N 151.137 163.351 146.666 -0.201 -4.227 0.309  O27 WFR 36 
WFR P19 P1  P 0 1 N N S 148.066 163.864 148.389 -3.162 -0.362 -0.698 P19 WFR 37 
WFR H1  H1  H 0 1 N N N 146.586 161.931 149.634 -0.325 2.606  0.099  H1  WFR 38 
WFR H2  H2  H 0 1 N N N 147.283 158.878 149.942 0.959  2.075  -2.586 H2  WFR 39 
WFR H3  H3  H 0 1 N N N 143.809 160.101 148.842 2.109  2.442  1.129  H3  WFR 40 
WFR H4  H4  H 0 1 N N N 148.300 160.178 147.760 -1.555 1.750  -1.952 H4  WFR 41 
WFR H5  H5  H 0 1 N N N 148.982 161.000 149.204 -0.551 0.282  -1.875 H5  WFR 42 
WFR H6  H6  H 0 1 N N N 145.438 157.920 151.989 3.360  2.174  -2.940 H6  WFR 43 
WFR H7  H7  H 0 1 N N N 144.091 157.668 150.828 4.356  1.696  -1.544 H7  WFR 44 
WFR H8  H8  H 0 1 N N N 145.785 157.353 150.321 2.982  0.681  -2.046 H8  WFR 45 
WFR H9  H9  H 0 1 N N N 146.976 156.396 146.213 4.247  -2.343 0.082  H9  WFR 46 
WFR H10 H10 H 0 1 N N N 146.926 158.490 147.461 2.367  -0.841 -0.323 H10 WFR 47 
WFR H11 H11 H 0 1 N N N 150.226 166.623 146.916 -1.641 -1.890 0.678  H11 WFR 48 
WFR H12 H12 H 0 1 N N N 149.848 166.660 149.414 -2.651 -3.949 1.535  H12 WFR 49 
WFR H13 H13 H 0 1 N N N 150.682 165.073 149.532 -3.938 -2.874 0.938  H13 WFR 50 
WFR H14 H14 H 0 1 N N N 151.581 166.520 148.961 -3.416 -4.265 -0.041 H14 WFR 51 
WFR H15 H15 H 0 1 N N N 153.072 162.511 146.650 0.605  -5.325 -1.272 H15 WFR 52 
WFR H16 H16 H 0 1 N N N 153.194 162.090 149.128 2.965  -4.840 -0.688 H16 WFR 53 
WFR H17 H17 H 0 1 N N N 152.833 163.817 148.792 2.031  -3.336 -0.873 H17 WFR 54 
WFR H18 H18 H 0 1 N N N 151.520 162.712 149.323 2.425  -3.945 0.753  H18 WFR 55 
WFR H19 H19 H 0 1 N N N 152.382 160.261 147.553 1.312  -6.008 1.618  H19 WFR 56 
WFR H20 H20 H 0 1 N N N 150.686 160.833 147.701 0.126  -6.869 0.608  H20 WFR 57 
WFR H21 H21 H 0 1 N N N 151.441 160.672 146.079 1.853  -6.903 0.177  H21 WFR 58 
WFR H22 H22 H 0 1 N N N 146.809 163.222 145.964 -2.979 1.231  2.188  H22 WFR 59 
WFR H23 H23 H 0 1 N N N 145.064 162.604 144.202 -3.946 3.378  2.907  H23 WFR 60 
WFR H24 H24 H 0 1 N N N 142.573 162.749 144.732 -6.174 4.054  2.110  H24 WFR 61 
WFR H25 H25 H 0 1 N N N 141.797 163.519 147.047 -7.440 2.587  0.592  H25 WFR 62 
WFR H26 H26 H 0 1 N N N 143.518 164.154 148.857 -6.478 0.442  -0.135 H26 WFR 63 
WFR H27 H27 H 0 1 N N N 143.728 162.144 152.792 3.797  5.870  -0.406 H27 WFR 64 
WFR H28 H28 H 0 1 N N N 142.747 155.728 147.179 6.288  0.838  1.842  H28 WFR 65 
WFR H29 H29 H 0 1 N N N 148.160 165.913 147.515 -2.022 -1.846 -1.949 H29 WFR 66 
WFR H30 H30 H 0 1 N N N 147.145 159.466 152.198 -0.293 4.075  -2.090 H30 WFR 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WFR C33 C34 DOUB Y N 1  
WFR C33 C32 SING Y N 2  
WFR C34 C35 SING Y N 3  
WFR O16 C13 DOUB N N 4  
WFR C32 C31 DOUB Y N 5  
WFR C13 C14 SING N N 6  
WFR C13 N12 SING N N 7  
WFR O26 C24 DOUB N N 8  
WFR O27 C24 SING N N 9  
WFR O27 C28 SING N N 10 
WFR C14 C15 DOUB N N 11 
WFR C35 C36 DOUB Y N 12 
WFR C24 C23 SING N N 13 
WFR C30 C28 SING N N 14 
WFR C28 C29 SING N N 15 
WFR N12 C11 SING N N 16 
WFR N22 C23 SING N N 17 
WFR N22 P19 SING N N 18 
WFR C15 N06 SING N N 19 
WFR C23 C25 SING N N 20 
WFR C31 C36 SING Y N 21 
WFR C31 O20 SING N N 22 
WFR O18 P19 SING N N 23 
WFR O18 C07 SING N N 24 
WFR C11 N06 SING N N 25 
WFR C11 O17 DOUB N N 26 
WFR N06 C05 SING N N 27 
WFR O01 C05 SING N N 28 
WFR O01 C02 SING N N 29 
WFR P19 O20 SING N N 30 
WFR P19 O21 DOUB N N 31 
WFR C07 C02 SING N N 32 
WFR C05 C04 SING N N 33 
WFR C02 C03 SING N N 34 
WFR C03 C04 SING N N 35 
WFR C03 O08 SING N N 36 
WFR C04 C10 SING N N 37 
WFR C04 C09 SING N N 38 
WFR C09 C37 TRIP N N 39 
WFR C02 H1  SING N N 40 
WFR C03 H2  SING N N 41 
WFR C05 H3  SING N N 42 
WFR C07 H4  SING N N 43 
WFR C07 H5  SING N N 44 
WFR C10 H6  SING N N 45 
WFR C10 H7  SING N N 46 
WFR C10 H8  SING N N 47 
WFR C14 H9  SING N N 48 
WFR C15 H10 SING N N 49 
WFR C23 H11 SING N N 50 
WFR C25 H12 SING N N 51 
WFR C25 H13 SING N N 52 
WFR C25 H14 SING N N 53 
WFR C28 H15 SING N N 54 
WFR C29 H16 SING N N 55 
WFR C29 H17 SING N N 56 
WFR C29 H18 SING N N 57 
WFR C30 H19 SING N N 58 
WFR C30 H20 SING N N 59 
WFR C30 H21 SING N N 60 
WFR C32 H22 SING N N 61 
WFR C33 H23 SING N N 62 
WFR C34 H24 SING N N 63 
WFR C35 H25 SING N N 64 
WFR C36 H26 SING N N 65 
WFR C37 H27 SING N N 66 
WFR N12 H28 SING N N 67 
WFR N22 H29 SING N N 68 
WFR O08 H30 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WFR SMILES           ACDLabs              12.01 "CC(C)OC(=O)C(C)NP(=O)(Oc1ccccc1)OCC1OC(N2C=CC(=O)NC2=O)C(C)(C#C)C1O"                                                                                                                                                             
WFR InChI            InChI                1.06  "InChI=1S/C24H30N3O9P/c1-6-24(5)20(29)18(35-22(24)27-13-12-19(28)25-23(27)31)14-33-37(32,36-17-10-8-7-9-11-17)26-16(4)21(30)34-15(2)3/h1,7-13,15-16,18,20,22,29H,14H2,2-5H3,(H,26,32)(H,25,28,31)/t16-,18+,20+,22+,24+,37-/m0/s1" 
WFR InChIKey         InChI                1.06  HVOMZYITEDRMBB-XSZHHMMYSA-N                                                                                                                                                                                                       
WFR SMILES_CANONICAL CACTVS               3.385 "CC(C)OC(=O)[C@H](C)N[P@](=O)(OC[C@H]1O[C@@H](N2C=CC(=O)NC2=O)[C@](C)(C#C)[C@@H]1O)Oc3ccccc3"                                                                                                                                     
WFR SMILES           CACTVS               3.385 "CC(C)OC(=O)[CH](C)N[P](=O)(OC[CH]1O[CH](N2C=CC(=O)NC2=O)[C](C)(C#C)[CH]1O)Oc3ccccc3"                                                                                                                                             
WFR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)OC(C)C)N[P@](=O)(OC[C@@H]1[C@H]([C@@]([C@@H](O1)N2C=CC(=O)NC2=O)(C)C#C)O)Oc3ccccc3"                                                                                                                                 
WFR SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)OC(=O)C(C)NP(=O)(OCC1C(C(C(O1)N2C=CC(=O)NC2=O)(C)C#C)O)Oc3ccccc3"                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WFR "SYSTEMATIC NAME" ACDLabs              12.01 "propan-2-yl (2S)-2-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-ethynyl-3-hydroxy-4-methyloxolan-2-yl]methoxy}(phenoxy)phosphoryl]amino}propanoate (non-preferred name)" 
WFR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "propan-2-yl (2~{S})-2-[[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-ethynyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-phenoxy-phosphoryl]amino]propanoate"              
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WFR "Create component" 2022-09-06 RCSB 
WFR "Initial release"  2022-12-07 RCSB 
# 
