data_XFR
# 
_chem_comp.id                                    XFR 
_chem_comp.name                                  "(1R,2S)-1-hydroxy-2-[(N-{[2-methyl-2-(phenylsulfanyl)propoxy]carbonyl}-L-leucyl)amino]-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H37 N3 O8 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        559.696 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XFR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F44 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XFR C11 C1  C 0 1 N N N N N N 6.072  21.076 25.143 -4.023 -2.119 -1.644 C11 XFR 1  
XFR C12 C2  C 0 1 N N N N N N 5.154  22.643 26.616 -6.005 -3.329 -1.668 C12 XFR 2  
XFR C13 C3  C 0 1 N N N N N N 6.339  22.073 27.318 -6.325 -1.986 -2.359 C13 XFR 3  
XFR C5  C4  C 0 1 N N N N N N 15.435 22.117 29.149 -0.062 -3.224 2.016  C5  XFR 4  
XFR C10 C5  C 0 1 N N S N N N 7.106  21.243 26.256 -5.119 -1.117 -1.932 C10 XFR 5  
XFR C1  C6  C 0 1 N N N N N N 10.923 24.252 26.423 1.664  -0.691 0.321  C1  XFR 6  
XFR C2  C7  C 0 1 N N S N N N 11.835 22.156 27.504 -0.755 -0.683 0.612  C2  XFR 7  
XFR C3  C8  C 0 1 N N N N N N 12.991 21.727 28.488 -0.966 -0.896 2.112  C3  XFR 8  
XFR C4  C9  C 0 1 N N N N N N 14.381 22.200 28.015 0.111  -1.842 2.649  C4  XFR 9  
XFR C6  C10 C 0 1 N N N N N N 14.847 21.428 26.775 -0.023 -1.957 4.169  C6  XFR 10 
XFR C7  C11 C 0 1 N N N N N N 10.503 21.552 28.051 -1.884 0.148  0.060  C7  XFR 11 
XFR C8  C12 C 0 1 N N S N N N 8.554  19.917 27.925 -4.260 0.559  -0.289 C8  XFR 12 
XFR C14 C13 C 0 1 N N R N N N 8.858  18.487 28.507 -4.661 1.501  0.848  C14 XFR 13 
XFR C9  C14 C 0 1 N N N N N N 7.506  19.852 26.776 -5.457 -0.315 -0.673 C9  XFR 14 
XFR C15 C15 C 0 1 N N N N N N 10.863 26.227 24.985 4.029  -0.873 0.054  C15 XFR 15 
XFR C16 C16 C 0 1 N N N N N N 11.130 27.792 25.095 5.248  0.021  -0.180 C16 XFR 16 
XFR O3  O1  O 0 1 N N N N N N 9.723  18.720 29.636 -5.220 0.741  1.921  O3  XFR 17 
XFR O1  O2  O 0 1 N N N N N N 10.153 23.613 25.687 1.645  -1.900 0.442  O1  XFR 18 
XFR N1  N1  N 0 1 N N N N N N 11.755 23.633 27.377 0.516  0.011  0.391  N1  XFR 19 
XFR N2  N2  N 0 1 N N N N N N 9.811  20.503 27.420 -3.154 -0.295 0.150  N2  XFR 20 
XFR N3  N3  N 0 1 N N N N N N 4.937  21.884 25.361 -4.547 -3.349 -1.506 N3  XFR 21 
XFR O2  O3  O 0 1 N N N N N N 6.151  20.333 24.160 -2.844 -1.852 -1.555 O2  XFR 22 
XFR O4  O4  O 0 1 N N N N N N 10.038 22.028 29.115 -1.650 1.215  -0.467 O4  XFR 23 
XFR O5  O5  O 0 1 N N N N N N 10.960 25.633 26.295 2.832  -0.053 0.118  O5  XFR 24 
XFR S2  S1  S 0 1 N Y N N N N 9.750  17.504 27.284 -5.891 2.689  0.243  S2  XFR 25 
XFR C17 C17 C 0 1 N N N N N N 10.103 28.448 26.042 5.078  0.780  -1.498 C17 XFR 26 
XFR C18 C18 C 0 1 N N N N N N 12.578 28.024 25.623 5.376  1.021  0.971  C18 XFR 27 
XFR S1  S2  S 0 1 N N N N N N 11.010 28.616 23.410 6.743  -1.003 -0.261 S1  XFR 28 
XFR C19 C19 C 0 1 Y N N N N N 9.791  29.981 23.400 8.028  0.186  -0.464 C19 XFR 29 
XFR C20 C20 C 0 1 Y N N N N N 8.434  29.685 23.183 7.716  1.536  -0.572 C20 XFR 30 
XFR C21 C21 C 0 1 Y N N N N N 7.472  30.716 23.172 8.726  2.464  -0.731 C21 XFR 31 
XFR C22 C22 C 0 1 Y N N N N N 7.861  32.058 23.384 10.045 2.053  -0.783 C22 XFR 32 
XFR C23 C23 C 0 1 Y N N N N N 9.229  32.355 23.607 10.358 0.710  -0.675 C23 XFR 33 
XFR C24 C24 C 0 1 Y N N N N N 10.191 31.314 23.617 9.355  -0.224 -0.510 C24 XFR 34 
XFR H1  H1  H 0 1 N N N N N N 5.336  23.702 26.382 -6.493 -3.379 -0.695 H1  XFR 35 
XFR H2  H2  H 0 1 N N N N N N 4.266  22.557 27.259 -6.328 -4.162 -2.293 H2  XFR 36 
XFR H3  H3  H 0 1 N N N N N N 6.017  21.427 28.149 -6.358 -2.102 -3.442 H3  XFR 37 
XFR H4  H4  H 0 1 N N N N N N 6.978  22.880 27.707 -7.260 -1.568 -1.986 H4  XFR 38 
XFR H5  H5  H 0 1 N N N N N N 15.077 22.678 30.025 0.033  -3.142 0.933  H5  XFR 39 
XFR H6  H6  H 0 1 N N N N N N 15.592 21.064 29.427 0.705  -3.898 2.398  H6  XFR 40 
XFR H7  H7  H 0 1 N N N N N N 16.384 22.550 28.800 -1.048 -3.617 2.265  H7  XFR 41 
XFR H8  H8  H 0 1 N N N N N N 7.987  21.794 25.895 -4.823 -0.449 -2.741 H8  XFR 42 
XFR H9  H9  H 0 1 N N N N N N 12.039 21.714 26.518 -0.734 -1.649 0.107  H9  XFR 43 
XFR H10 H10 H 0 1 N N N N N N 12.790 22.161 29.478 -0.898 0.061  2.628  H10 XFR 44 
XFR H11 H11 H 0 1 N N N N N N 13.000 20.630 28.564 -1.950 -1.332 2.283  H11 XFR 45 
XFR H12 H12 H 0 1 N N N N N N 14.289 23.259 27.731 1.097  -1.449 2.400  H12 XFR 46 
XFR H13 H13 H 0 1 N N N N N N 15.839 21.791 26.468 -1.009 -2.350 4.418  H13 XFR 47 
XFR H14 H14 H 0 1 N N N N N N 14.907 20.355 27.012 0.744  -2.631 4.551  H14 XFR 48 
XFR H15 H15 H 0 1 N N N N N N 14.130 21.583 25.956 0.100  -0.973 4.620  H15 XFR 49 
XFR H16 H16 H 0 1 N N N N N N 8.151  20.544 28.734 -3.946 1.145  -1.153 H16 XFR 50 
XFR H17 H17 H 0 1 N N N N N N 7.931  17.957 28.770 -3.781 2.037  1.202  H17 XFR 51 
XFR H18 H18 H 0 1 N N N N N N 6.605  19.344 27.150 -6.322 0.319  -0.867 H18 XFR 52 
XFR H19 H19 H 0 1 N N N N N N 7.933  19.275 25.943 -5.684 -0.999 0.144  H19 XFR 53 
XFR H20 H20 H 0 1 N N N N N N 9.856  26.054 24.577 3.938  -1.585 -0.766 H20 XFR 54 
XFR H21 H21 H 0 1 N N N N N N 11.612 25.773 24.319 4.150  -1.413 0.993  H21 XFR 55 
XFR H22 H22 H 0 1 N N N N N N 9.263  19.237 30.287 -4.616 0.084  2.294  H22 XFR 56 
XFR H23 H23 H 0 1 N N N N N N 12.307 24.204 27.985 0.531  0.976  0.295  H23 XFR 57 
XFR H24 H24 H 0 1 N N N N N N 10.195 20.130 26.575 -3.335 -1.178 0.507  H24 XFR 58 
XFR H25 H25 H 0 1 N N N N N N 4.129  21.936 24.774 -4.027 -4.148 -1.323 H25 XFR 59 
XFR H27 H27 H 0 1 N N N N N N 10.163 27.975 27.033 4.432  1.643  -1.339 H27 XFR 60 
XFR H28 H28 H 0 1 N N N N N N 10.324 29.522 26.135 6.053  1.116  -1.852 H28 XFR 61 
XFR H29 H29 H 0 1 N N N N N N 9.090  28.316 25.633 4.629  0.122  -2.241 H29 XFR 62 
XFR H30 H30 H 0 1 N N N N N N 12.688 27.554 26.612 5.334  0.488  1.921  H30 XFR 63 
XFR H31 H31 H 0 1 N N N N N N 13.299 27.578 24.923 6.327  1.548  0.891  H31 XFR 64 
XFR H32 H32 H 0 1 N N N N N N 12.769 29.104 25.707 4.557  1.739  0.921  H32 XFR 65 
XFR H33 H33 H 0 1 N N N N N N 8.126  28.662 23.024 6.686  1.858  -0.533 H33 XFR 66 
XFR H34 H34 H 0 1 N N N N N N 6.432  30.479 23.001 8.485  3.514  -0.816 H34 XFR 67 
XFR H35 H35 H 0 1 N N N N N N 7.125  32.848 23.376 10.832 2.781  -0.907 H35 XFR 68 
XFR H36 H36 H 0 1 N N N N N N 9.539  33.377 23.770 11.390 0.392  -0.716 H36 XFR 69 
XFR H37 H37 H 0 1 N N N N N N 11.232 31.543 23.791 9.601  -1.272 -0.421 H37 XFR 70 
XFR O6  O6  O 0 1 N Y N N N N 9.697  15.889 28.097 -5.248 3.306  -0.991 O6  XFR 71 
XFR O7  O7  O 0 1 N Y N N N N ?      ?      ?      -7.034 2.011  -0.259 O7  XFR 72 
XFR O8  O8  O 0 1 N Y N N N N ?      ?      ?      -6.023 3.775  1.150  O8  XFR 73 
XFR H26 H26 H 0 1 N N N N N N 10.141 15.247 27.556 -5.797 3.971  -1.429 H26 XFR 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XFR C21 C20 DOUB Y N 1  
XFR C21 C22 SING Y N 2  
XFR C20 C19 SING Y N 3  
XFR C22 C23 DOUB Y N 4  
XFR C19 S1  SING N N 5  
XFR C19 C24 DOUB Y N 6  
XFR S1  C16 SING N N 7  
XFR C23 C24 SING Y N 8  
XFR O2  C11 DOUB N N 9  
XFR C15 C16 SING N N 10 
XFR C15 O5  SING N N 11 
XFR C16 C18 SING N N 12 
XFR C16 C17 SING N N 13 
XFR C11 N3  SING N N 14 
XFR C11 C10 SING N N 15 
XFR N3  C12 SING N N 16 
XFR O1  C1  DOUB N N 17 
XFR C10 C9  SING N N 18 
XFR C10 C13 SING N N 19 
XFR O5  C1  SING N N 20 
XFR C1  N1  SING N N 21 
XFR C12 C13 SING N N 22 
XFR C6  C4  SING N N 23 
XFR C9  C8  SING N N 24 
XFR S2  C14 SING N N 25 
XFR N1  C2  SING N N 26 
XFR N2  C8  SING N N 27 
XFR N2  C7  SING N N 28 
XFR C2  C7  SING N N 29 
XFR C2  C3  SING N N 30 
XFR C8  C14 SING N N 31 
XFR C4  C3  SING N N 32 
XFR C4  C5  SING N N 33 
XFR C7  O4  DOUB N N 34 
XFR C14 O3  SING N N 35 
XFR C12 H1  SING N N 36 
XFR C12 H2  SING N N 37 
XFR C13 H3  SING N N 38 
XFR C13 H4  SING N N 39 
XFR C5  H5  SING N N 40 
XFR C5  H6  SING N N 41 
XFR C5  H7  SING N N 42 
XFR C10 H8  SING N N 43 
XFR C2  H9  SING N N 44 
XFR C3  H10 SING N N 45 
XFR C3  H11 SING N N 46 
XFR C4  H12 SING N N 47 
XFR C6  H13 SING N N 48 
XFR C6  H14 SING N N 49 
XFR C6  H15 SING N N 50 
XFR C8  H16 SING N N 51 
XFR C14 H17 SING N N 52 
XFR C9  H18 SING N N 53 
XFR C9  H19 SING N N 54 
XFR C15 H20 SING N N 55 
XFR C15 H21 SING N N 56 
XFR O3  H22 SING N N 57 
XFR N1  H23 SING N N 58 
XFR N2  H24 SING N N 59 
XFR N3  H25 SING N N 60 
XFR C17 H27 SING N N 61 
XFR C17 H28 SING N N 62 
XFR C17 H29 SING N N 63 
XFR C18 H30 SING N N 64 
XFR C18 H31 SING N N 65 
XFR C18 H32 SING N N 66 
XFR C20 H33 SING N N 67 
XFR C21 H34 SING N N 68 
XFR C22 H35 SING N N 69 
XFR C23 H36 SING N N 70 
XFR C24 H37 SING N N 71 
XFR S2  O6  SING N N 72 
XFR S2  O7  DOUB N N 73 
XFR S2  O8  DOUB N N 74 
XFR O6  H26 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XFR SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                      
XFR InChI            InChI                1.06  "InChI=1S/C24H37N3O8S2/c1-15(2)12-18(27-23(31)35-14-24(3,4)36-17-8-6-5-7-9-17)21(29)26-19(22(30)37(32,33)34)13-16-10-11-25-20(16)28/h5-9,15-16,18-19,22,30H,10-14H2,1-4H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t16-,18-,19-,22+/m0/s1" 
XFR InChIKey         InChI                1.06  AGWHKDXHVADVIY-JLEJFLCFSA-N                                                                                                                                                                                                               
XFR SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"                                                                                                                                                  
XFR SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                        
XFR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCC(C)(C)Sc2ccccc2"                                                                                                                                                   
XFR SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC(C)(C)Sc2ccccc2"                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XFR "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S)-1-hydroxy-2-[(N-{[2-methyl-2-(phenylsulfanyl)propoxy]carbonyl}-L-leucyl)amino]-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                          
XFR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-4-methyl-2-[(2-methyl-2-phenylsulfanyl-propoxy)carbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XFR "Create component" 2022-11-14 RCSB 
XFR "Initial release"  2022-11-23 RCSB 
XFR "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XFR 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
