data_YIR
# 
_chem_comp.id                                    YIR 
_chem_comp.name                                  "(E)-N-(5-(2-CARBAMIMIDOYLHYDRAZONO)-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)-7-NITRO-1H-INDOLE-2-CARBOXAMIDE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H19 N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-05-16 
_chem_comp.pdbx_modified_date                    2011-09-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        405.410 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YIR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2YIR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YIR NAA  NAA  N 1  1 N N N 49.117 16.744 -11.851 -6.268 -1.674 -0.683 NAA  YIR 1  
YIR NAB  NAB  N 0  1 Y N N 48.268 15.775 -9.198  -3.692 -0.065 -0.127 NAB  YIR 2  
YIR NAC  NAC  N 0  1 N N N 47.139 14.660 -5.888  -0.751 -0.212 -0.124 NAC  YIR 3  
YIR NAD  NAD  N 0  1 N N N 47.191 12.211 -0.103  5.625  0.407  -0.185 NAD  YIR 4  
YIR NAE  NAE  N 0  1 N N N 47.288 11.659 1.007   7.018  0.303  -0.082 NAE  YIR 5  
YIR NAF  NAF  N 0  1 N N N 46.907 11.776 3.298   9.189  1.212  -0.457 NAF  YIR 6  
YIR NAG  NAG  N 0  1 N N N 46.254 13.485 1.942   7.285  2.371  -1.103 NAG  YIR 7  
YIR CAH  CAH  C 0  1 Y N N 47.519 18.561 -11.764 -7.390 0.430  -0.016 CAH  YIR 8  
YIR CAI  CAI  C 0  1 Y N N 46.551 19.143 -10.947 -7.360 1.751  0.413  CAI  YIR 9  
YIR CAJ  CAJ  C 0  1 Y N N 46.212 18.647 -9.695  -6.171 2.383  0.634  CAJ  YIR 10 
YIR CAK  CAK  C 0  1 Y N N 46.818 17.508 -9.168  -4.968 1.695  0.427  CAK  YIR 11 
YIR CAL  CAL  C 0  1 Y N N 47.821 16.840 -9.873  -4.996 0.356  -0.008 CAL  YIR 12 
YIR CAM  CAM  C 0  1 Y N N 48.176 17.342 -11.127 -6.222 -0.267 -0.226 CAM  YIR 13 
YIR CAN  CAN  C 0  1 Y N N 46.591 16.774 -7.870  -3.605 2.059  0.557  CAN  YIR 14 
YIR CAO  CAO  C 0  1 Y N N 47.624 15.699 -8.028  -2.855 0.976  0.222  CAO  YIR 15 
YIR CAP  CAP  C 0  1 N N N 47.927 14.650 -6.971  -1.385 0.923  0.230  CAP  YIR 16 
YIR CAQ  CAQ  C 0  1 Y N N 47.266 13.898 -4.796  0.640  -0.295 -0.024 CAQ  YIR 17 
YIR CAR  CAR  C 0  1 Y N N 48.269 12.926 -4.645  1.238  -1.497 0.335  CAR  YIR 18 
YIR CAS  CAS  C 0  1 Y N N 48.372 12.195 -3.453  2.613  -1.589 0.435  CAS  YIR 19 
YIR CAT  CAT  C 0  1 Y N N 47.481 12.441 -2.410  3.395  -0.464 0.169  CAT  YIR 20 
YIR CAU  CAU  C 0  1 Y N N 46.495 13.432 -2.554  2.793  0.744  -0.190 CAU  YIR 21 
YIR CAV  CAV  C 0  1 Y N N 46.388 14.155 -3.740  1.421  0.825  -0.291 CAV  YIR 22 
YIR CAW  CAW  C 0  1 N N N 49.475 11.128 -3.330  3.230  -2.902 0.832  CAW  YIR 23 
YIR CAX  CAX  C 0  1 N N N 49.025 9.933  -2.480  4.681  -2.994 0.370  CAX  YIR 24 
YIR CAY  CAY  C 0  1 N N N 48.402 10.353 -1.154  5.462  -1.785 0.902  CAY  YIR 25 
YIR CAZ  CAZ  C 0  1 N N N 47.642 11.691 -1.240  4.868  -0.547 0.263  CAZ  YIR 26 
YIR CBA  CBA  C 0  1 N N N 46.826 12.301 2.079   7.821  1.315  -0.558 CBA  YIR 27 
YIR OBB  OBB  O 0  1 N N N 49.796 15.580 -11.423 -7.342 -2.217 -0.873 OBB  YIR 28 
YIR OBC  OBC  O -1 1 N N N 49.444 17.253 -13.121 -5.233 -2.288 -0.873 OBC  YIR 29 
YIR OBD  OBD  O 0  1 N N N 48.892 13.748 -7.229  -0.743 1.903  0.556  OBD  YIR 30 
YIR HNAB HNAB H 0  0 N N N 48.970 15.138 -9.517  -3.408 -0.950 -0.406 HNAB YIR 31 
YIR HNAC HNAC H 0  0 N N N 46.375 15.305 -5.897  -1.260 -0.972 -0.447 HNAC YIR 32 
YIR H1AF H1AF H 0  0 N N N 46.540 12.275 4.083   9.588  0.427  -0.051 H1AF YIR 33 
YIR H2AF H2AF H 0  0 N N N 47.335 10.882 3.430   9.755  1.926  -0.792 H2AF YIR 34 
YIR HAG  HAG  H 0  1 N N N 45.940 13.853 2.817   7.850  3.084  -1.438 HAG  YIR 35 
YIR HAH  HAH  H 0  1 N N N 47.776 18.934 -12.744 -8.340 -0.055 -0.187 HAH  YIR 36 
YIR HAI  HAI  H 0  1 N N N 46.039 20.024 -11.306 -8.286 2.283  0.572  HAI  YIR 37 
YIR HAJ  HAJ  H 0  1 N N N 45.458 19.158 -9.114  -6.157 3.410  0.967  HAJ  YIR 38 
YIR HAN  HAN  H 0  1 N N N 45.894 16.965 -7.068  -3.230 3.022  0.868  HAN  YIR 39 
YIR HAR  HAR  H 0  1 N N N 48.964 12.741 -5.451  0.625  -2.362 0.538  HAR  YIR 40 
YIR HAU  HAU  H 0  1 N N N 45.815 13.635 -1.739  3.401  1.613  -0.392 HAU  YIR 41 
YIR HAV  HAV  H 0  1 N N N 45.627 14.914 -3.843  0.952  1.756  -0.572 HAV  YIR 42 
YIR H1AW H1AW H 0  0 N N N 49.729 10.767 -4.338  3.193  -3.000 1.917  H1AW YIR 43 
YIR H2AW H2AW H 0  0 N N N 50.356 11.585 -2.855  2.660  -3.715 0.382  H2AW YIR 44 
YIR H1AX H1AX H 0  0 N N N 48.276 9.364  -3.050  5.127  -3.912 0.753  H1AX YIR 45 
YIR H2AX H2AX H 0  0 N N N 49.905 9.308  -2.267  4.717  -3.000 -0.719 H2AX YIR 46 
YIR H1AY H1AY H 0  0 N N N 47.692 9.572  -0.844  5.363  -1.727 1.986  H1AY YIR 47 
YIR H2AY H2AY H 0  0 N N N 49.208 10.461 -0.413  6.514  -1.875 0.630  H2AY YIR 48 
YIR HAE  HAE  H 0  1 N N N 47.703 10.753 1.093   7.417  -0.482 0.323  HAE  YIR 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YIR OBC NAA  SING N N 1  
YIR NAA OBB  DOUB N N 2  
YIR NAA CAM  SING N N 3  
YIR CAH CAM  DOUB Y N 4  
YIR CAH CAI  SING Y N 5  
YIR CAM CAL  SING Y N 6  
YIR CAI CAJ  DOUB Y N 7  
YIR CAL NAB  SING Y N 8  
YIR CAL CAK  DOUB Y N 9  
YIR CAJ CAK  SING Y N 10 
YIR NAB CAO  SING Y N 11 
YIR CAK CAN  SING Y N 12 
YIR CAO CAN  DOUB Y N 13 
YIR CAO CAP  SING N N 14 
YIR OBD CAP  DOUB N N 15 
YIR CAP NAC  SING N N 16 
YIR NAC CAQ  SING N N 17 
YIR CAQ CAR  SING Y N 18 
YIR CAQ CAV  DOUB Y N 19 
YIR CAR CAS  DOUB Y N 20 
YIR CAV CAU  SING Y N 21 
YIR CAS CAW  SING N N 22 
YIR CAS CAT  SING Y N 23 
YIR CAW CAX  SING N N 24 
YIR CAU CAT  DOUB Y N 25 
YIR CAX CAY  SING N N 26 
YIR CAT CAZ  SING N N 27 
YIR CAZ CAY  SING N N 28 
YIR CAZ NAD  DOUB N N 29 
YIR NAD NAE  SING N N 30 
YIR NAE CBA  SING N N 31 
YIR NAG CBA  DOUB N N 32 
YIR CBA NAF  SING N N 33 
YIR NAB HNAB SING N N 34 
YIR NAC HNAC SING N N 35 
YIR NAF H1AF SING N N 36 
YIR NAF H2AF SING N N 37 
YIR NAG HAG  SING N N 38 
YIR CAH HAH  SING N N 39 
YIR CAI HAI  SING N N 40 
YIR CAJ HAJ  SING N N 41 
YIR CAN HAN  SING N N 42 
YIR CAR HAR  SING N N 43 
YIR CAU HAU  SING N N 44 
YIR CAV HAV  SING N N 45 
YIR CAW H1AW SING N N 46 
YIR CAW H2AW SING N N 47 
YIR CAX H1AX SING N N 48 
YIR CAX H2AX SING N E 49 
YIR CAY H1AY SING N N 50 
YIR CAY H2AY SING N N 51 
YIR NAE HAE  SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YIR SMILES           ACDLabs              12.01 "[O-][N+](=O)c1cccc2c1nc(c2)C(=O)Nc4ccc3\C(=N\NC(=[N@H])N)CCCc3c4"                                                                                                       
YIR SMILES_CANONICAL CACTVS               3.370 "NC(=N)N/N=C/1CCCc2cc(NC(=O)c3[nH]c4c(cccc4[N+]([O-])=O)c3)ccc/12"                                                                                                       
YIR SMILES           CACTVS               3.370 "NC(=N)NN=C1CCCc2cc(NC(=O)c3[nH]c4c(cccc4[N+]([O-])=O)c3)ccc12"                                                                                                          
YIR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "[H]/N=C(\N)/N/N=C/1\CCCc2c1ccc(c2)NC(=O)c3cc4cccc(c4[nH]3)[N+](=O)[O-]"                                                                                                 
YIR SMILES           "OpenEye OEToolkits" 1.7.2 "c1cc2cc([nH]c2c(c1)[N+](=O)[O-])C(=O)Nc3ccc4c(c3)CCCC4=NNC(=N)N"                                                                                                        
YIR InChI            InChI                1.03  "InChI=1S/C20H19N7O3/c21-20(22)26-25-15-5-1-3-11-9-13(7-8-14(11)15)23-19(28)16-10-12-4-2-6-17(27(29)30)18(12)24-16/h2,4,6-10,24H,1,3,5H2,(H,23,28)(H4,21,22,26)/b25-15+" 
YIR InChIKey         InChI                1.03  CFOWEKJDEFRRLQ-MFKUBSTISA-N                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YIR "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(5E)-5-(carbamimidoylhydrazono)-5,6,7,8-tetrahydronaphthalen-2-yl]-7-nitro-1H-indole-2-carboxamide"    
YIR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "N-[(5E)-5-(carbamimidoylhydrazinylidene)-7,8-dihydro-6H-naphthalen-2-yl]-7-nitro-1H-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YIR "Create component"     2011-05-16 EBI  
YIR "Modify aromatic_flag" 2011-06-04 RCSB 
YIR "Modify descriptor"    2011-06-04 RCSB 
# 
