data_53S
# 
_chem_comp.id                                    53S 
_chem_comp.name                                  "5-[(3R)-3-(5-methoxy-4'-methylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H24 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-09-15 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        372.463 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     53S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3EEK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
53S C6   C6   C 0 1 Y N N 15.043 -8.455  -3.016  -3.880 -0.479 -0.014 C6   53S 1  
53S C5   C5   C 0 1 Y N N 15.135 -9.161  -4.235  -5.023 -1.150 0.423  C5   53S 2  
53S C2   C2   C 0 1 N N N 14.771 -1.192  -4.965  2.307  4.277  -0.291 C2   53S 3  
53S C20  C20  C 0 1 Y N N 8.875  -5.187  -6.303  5.028  0.354  -0.824 C20  53S 4  
53S C21  C21  C 0 1 Y N N 7.958  -5.575  -7.291  6.183  -0.259 -1.265 C21  53S 5  
53S C22  C22  C 0 1 Y N N 8.165  -5.325  -8.669  6.369  -1.616 -1.068 C22  53S 6  
53S C26  C26  C 0 1 N N N 7.102  -5.804  -9.719  7.632  -2.279 -1.553 C26  53S 7  
53S C23  C23  C 0 1 Y N N 9.335  -4.681  -9.104  5.399  -2.365 -0.428 C23  53S 8  
53S C24  C24  C 0 1 Y N N 10.255 -4.301  -8.114  4.240  -1.763 0.019  C24  53S 9  
53S C25  C25  C 0 1 Y N N 10.040 -4.536  -6.725  4.048  -0.397 -0.178 C25  53S 10 
53S C18  C18  C 0 1 Y N N 11.032 -4.114  -5.812  2.804  0.256  0.300  C18  53S 11 
53S C19  C19  C 0 1 Y N N 11.401 -4.891  -4.667  1.824  -0.495 0.946  C19  53S 12 
53S C17  C17  C 0 1 Y N N 11.712 -2.892  -6.121  2.615  1.623  0.109  C17  53S 13 
53S C16  C16  C 0 1 Y N N 12.731 -2.406  -5.290  1.452  2.227  0.557  C16  53S 14 
53S O17  O17  O 0 1 N N N 13.410 -1.213  -5.563  1.264  3.560  0.372  O17  53S 15 
53S C15  C15  C 0 1 Y N N 13.068 -3.174  -4.164  0.478  1.470  1.194  C15  53S 16 
53S C14  C14  C 0 1 Y N N 12.431 -4.379  -3.851  0.667  0.115  1.389  C14  53S 17 
53S C12  C12  C 0 1 N N S 12.941 -5.013  -2.575  -0.391 -0.699 2.087  C12  53S 18 
53S C13  C13  C 0 1 N N N 11.852 -5.095  -1.473  -0.610 -0.149 3.498  C13  53S 19 
53S C11  C11  C 0 1 N N N 13.635 -6.291  -2.821  -1.651 -0.620 1.329  C11  53S 20 
53S C10  C10  C 0 1 N N N 14.273 -7.270  -2.930  -2.655 -0.557 0.724  C10  53S 21 
53S C8   C8   C 0 1 N N N 14.464 -8.699  -5.580  -4.990 -1.971 1.686  C8   53S 22 
53S N4   N4   N 0 1 Y N N 15.878 -10.283 -4.235  -6.135 -1.054 -0.286 N4   53S 23 
53S C3   C3   C 0 1 Y N N 16.499 -10.759 -3.123  -6.178 -0.335 -1.399 C3   53S 24 
53S N7   N7   N 0 1 N N N 17.170 -11.926 -3.198  -7.364 -0.264 -2.106 N7   53S 25 
53S N2   N2   N 0 1 Y N N 16.367 -10.121 -1.963  -5.119 0.319  -1.853 N2   53S 26 
53S C1   C1   C 0 1 Y N N 15.704 -8.963  -1.855  -3.961 0.271  -1.204 C1   53S 27 
53S N9   N9   N 0 1 N N N 15.616 -8.358  -0.676  -2.859 0.954  -1.683 N9   53S 28 
53S H2   H2   H 0 1 N N N 15.524 -1.187  -5.767  3.230  4.187  0.282  H2   53S 29 
53S H2A  H2A  H 0 1 N N N 14.886 -0.289  -4.348  2.457  3.861  -1.288 H2A  53S 30 
53S H2B  H2B  H 0 1 N N N 14.909 -2.085  -4.338  2.031  5.328  -0.373 H2B  53S 31 
53S H20  H20  H 0 1 N N N 8.689  -5.383  -5.257  4.886  1.413  -0.974 H20  53S 32 
53S H21  H21  H 0 1 N N N 7.056  -6.086  -6.988  6.944  0.322  -1.766 H21  53S 33 
53S H26  H26  H 0 1 N N N 6.125  -5.916  -9.227  8.385  -2.246 -0.765 H26  53S 34 
53S H26A H26A H 0 0 N N N 7.023  -5.061  -10.526 7.422  -3.317 -1.811 H26A 53S 35 
53S H26B H26B H 0 0 N N N 7.413  -6.771  -10.140 8.004  -1.753 -2.433 H26B 53S 36 
53S H23  H23  H 0 1 N N N 9.518  -4.487  -10.151 5.549  -3.424 -0.276 H23  53S 37 
53S H24  H24  H 0 1 N N N 11.167 -3.808  -8.419  3.483  -2.349 0.518  H24  53S 38 
53S H19  H19  H 0 1 N N N 10.913 -5.827  -4.439  1.969  -1.554 1.099  H19  53S 39 
53S H17  H17  H 0 1 N N N 11.436 -2.338  -7.006  3.374  2.210  -0.387 H17  53S 40 
53S H15  H15  H 0 1 N N N 13.852 -2.819  -3.512  -0.428 1.943  1.543  H15  53S 41 
53S H12  H12  H 0 1 N N N 13.709 -4.337  -2.170  -0.069 -1.738 2.148  H12  53S 42 
53S H13  H13  H 0 1 N N N 12.332 -5.114  -0.483  -0.933 0.890  3.437  H13  53S 43 
53S H13A H13A H 0 0 N N N 11.193 -4.217  -1.543  -1.376 -0.738 4.003  H13A 53S 44 
53S H13B H13B H 0 0 N N N 11.259 -6.011  -1.611  0.322  -0.208 4.059  H13B 53S 45 
53S H8   H8   H 0 1 N N N 13.379 -8.591  -5.431  -5.259 -1.343 2.535  H8   53S 46 
53S H8A  H8A  H 0 1 N N N 14.889 -7.733  -5.889  -5.701 -2.793 1.603  H8A  53S 47 
53S H8B  H8B  H 0 1 N N N 14.654 -9.450  -6.361  -3.987 -2.372 1.833  H8B  53S 48 
53S HN7  HN7  H 0 1 N N N 17.336 -12.154 -4.157  -8.149 -0.737 -1.787 HN7  53S 49 
53S HN7A HN7A H 0 0 N N N 18.044 -11.839 -2.720  -7.412 0.258  -2.922 HN7A 53S 50 
53S HN9  HN9  H 0 1 N N N 15.594 -9.045  0.051   -2.019 0.920  -1.198 HN9  53S 51 
53S HN9A HN9A H 0 0 N N N 16.409 -7.762  -0.547  -2.924 1.468  -2.503 HN9A 53S 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
53S C6  C5   DOUB Y N 1  
53S C6  C10  SING N N 2  
53S C6  C1   SING Y N 3  
53S C5  C8   SING N N 4  
53S C5  N4   SING Y N 5  
53S C2  O17  SING N N 6  
53S C20 C21  DOUB Y N 7  
53S C20 C25  SING Y N 8  
53S C21 C22  SING Y N 9  
53S C22 C26  SING N N 10 
53S C22 C23  DOUB Y N 11 
53S C23 C24  SING Y N 12 
53S C24 C25  DOUB Y N 13 
53S C25 C18  SING Y N 14 
53S C18 C19  DOUB Y N 15 
53S C18 C17  SING Y N 16 
53S C19 C14  SING Y N 17 
53S C17 C16  DOUB Y N 18 
53S C16 O17  SING N N 19 
53S C16 C15  SING Y N 20 
53S C15 C14  DOUB Y N 21 
53S C14 C12  SING N N 22 
53S C12 C13  SING N N 23 
53S C12 C11  SING N N 24 
53S C11 C10  TRIP N N 25 
53S N4  C3   DOUB Y N 26 
53S C3  N7   SING N N 27 
53S C3  N2   SING Y N 28 
53S N2  C1   DOUB Y N 29 
53S C1  N9   SING N N 30 
53S C2  H2   SING N N 31 
53S C2  H2A  SING N N 32 
53S C2  H2B  SING N N 33 
53S C20 H20  SING N N 34 
53S C21 H21  SING N N 35 
53S C26 H26  SING N N 36 
53S C26 H26A SING N N 37 
53S C26 H26B SING N N 38 
53S C23 H23  SING N N 39 
53S C24 H24  SING N N 40 
53S C19 H19  SING N N 41 
53S C17 H17  SING N N 42 
53S C15 H15  SING N N 43 
53S C12 H12  SING N N 44 
53S C13 H13  SING N N 45 
53S C13 H13A SING N N 46 
53S C13 H13B SING N N 47 
53S C8  H8   SING N N 48 
53S C8  H8A  SING N N 49 
53S C8  H8B  SING N N 50 
53S N7  HN7  SING N N 51 
53S N7  HN7A SING N N 52 
53S N9  HN9  SING N N 53 
53S N9  HN9A SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
53S SMILES           ACDLabs              10.04 "C(#CC(c2cc(c1ccc(cc1)C)cc(OC)c2)C)c3c(nc(nc3C)N)N"                                                                                                            
53S SMILES_CANONICAL CACTVS               3.341 "COc1cc(cc(c1)c2ccc(C)cc2)[C@@H](C)C#Cc3c(C)nc(N)nc3N"                                                                                                         
53S SMILES           CACTVS               3.341 "COc1cc(cc(c1)c2ccc(C)cc2)[CH](C)C#Cc3c(C)nc(N)nc3N"                                                                                                           
53S SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1ccc(cc1)c2cc(cc(c2)OC)[C@@H](C)C#Cc3c(nc(nc3N)N)C"                                                                                                         
53S SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1ccc(cc1)c2cc(cc(c2)OC)C(C)C#Cc3c(nc(nc3N)N)C"                                                                                                              
53S InChI            InChI                1.03  "InChI=1S/C23H24N4O/c1-14-5-8-17(9-6-14)19-11-18(12-20(13-19)28-4)15(2)7-10-21-16(3)26-23(25)27-22(21)24/h5-6,8-9,11-13,15H,1-4H3,(H4,24,25,26,27)/t15-/m0/s1" 
53S InChIKey         InChI                1.03  QVXYJVHNRPNRJL-HNNXBMFYSA-N                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
53S "SYSTEMATIC NAME" ACDLabs              10.04 "5-[(3R)-3-(5-methoxy-4'-methylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
53S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(3R)-3-[3-methoxy-5-(4-methylphenyl)phenyl]but-1-ynyl]-6-methyl-pyrimidine-2,4-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
53S "Create component"     2008-09-15 RCSB 
53S "Modify aromatic_flag" 2011-06-04 RCSB 
53S "Modify descriptor"    2011-06-04 RCSB 
# 
