data_79S
# 
_chem_comp.id                                    79S 
_chem_comp.name                                  "(2~{S})-2-cyano-~{N},~{N}-dimethyl-3-[5-[3-[(1~{S},2~{R})-2-methylcyclohexyl]-3,5,8,10-tetrazatricyclo[7.3.0.0^{2,6}]dodeca-1,4,6,8,11-pentaen-4-yl]furan-2-yl]propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H28 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        444.529 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     79S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LWN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
79S C7  C1  C 0 1 Y N N N N N 19.312 24.785 26.584 -1.085 -1.634 -0.083 C7  79S 1  
79S C9  C2  C 0 1 Y N N N N N 19.793 26.995 25.403 0.990  -2.959 -0.644 C9  79S 2  
79S N1  N1  N 0 1 Y N N N N N 19.470 20.393 30.244 -6.316 0.760  0.145  N1  79S 3  
79S C2  C3  C 0 1 Y N N N N N 18.850 22.172 29.044 -4.139 0.256  0.202  C2  79S 4  
79S N2  N2  N 0 1 Y N N N N N 18.432 24.183 27.456 -1.667 -0.431 0.230  N2  79S 5  
79S C10 C4  C 0 1 Y N N N N N 19.298 27.552 24.206 2.358  -2.836 -0.340 C10 79S 6  
79S C4  C5  C 0 1 Y N N N N N 21.417 22.366 27.974 -4.536 -2.328 -0.633 C4  79S 7  
79S N3  N3  N 0 1 Y N N N N N 20.524 24.258 26.633 -2.013 -2.493 -0.438 N3  79S 8  
79S N5  N4  N 0 1 N N N N N N 15.696 28.260 20.033 3.046  1.793  -0.484 N5  79S 9  
79S C6  C6  C 0 1 Y N N N N N 18.140 20.630 30.507 -5.656 1.887  0.556  C6  79S 10 
79S C17 C7  C 0 1 N N N N N N 16.469 28.169 20.862 3.673  0.865  -0.295 C17 79S 11 
79S C13 C8  C 0 1 N N S N N N 17.446 28.112 21.911 4.485  -0.337 -0.049 C13 79S 12 
79S C14 C9  C 0 1 N N N N N N 16.889 29.029 22.996 5.844  0.070  0.460  C14 79S 13 
79S O1  O1  O 0 1 N N N N N N 16.353 28.550 23.977 6.221  -0.306 1.549  O1  79S 14 
79S N4  N5  N 0 1 N N N N N N 16.973 30.358 22.814 6.640  0.852  -0.296 N4  79S 15 
79S C16 C10 C 0 1 N N N N N N 17.538 30.904 21.582 6.184  1.306  -1.612 C16 79S 16 
79S C15 C11 C 0 1 N N N N N N 16.499 31.351 23.773 7.961  1.248  0.198  C15 79S 17 
79S C12 C12 C 0 1 N N N N N N 17.574 26.677 22.460 3.792  -1.216 0.994  C12 79S 18 
79S C11 C13 C 0 1 Y N N N N N 18.327 26.744 23.752 2.495  -1.737 0.431  C11 79S 19 
79S O   O2  O 0 1 Y N N N N N 18.131 25.697 24.642 1.286  -1.184 0.612  O   79S 20 
79S C8  C14 C 0 1 Y N N N N N 19.086 25.859 25.638 0.358  -1.916 -0.036 C8  79S 21 
79S C   C15 C 0 1 Y N N N N N 20.429 23.255 27.580 -3.229 -1.899 -0.373 C   79S 22 
79S N   N6  N 0 1 Y N N N N N 21.193 21.383 28.843 -5.559 -1.517 -0.482 N   79S 23 
79S C1  C16 C 0 1 Y N N N N N 19.136 23.182 28.106 -3.022 -0.576 0.054  C1  79S 24 
79S C5  C17 C 0 1 Y N N N N N 17.717 21.709 29.806 -4.336 1.647  0.611  C5  79S 25 
79S C3  C18 C 0 1 Y N N N N N 19.939 21.312 29.352 -5.417 -0.256 -0.080 C3  79S 26 
79S C18 C19 C 0 1 N N S N N N 16.995 24.412 27.676 -0.973 0.781  0.671  C18 79S 27 
79S C20 C20 C 0 1 N N R N N N 16.189 23.359 26.920 -1.995 1.893  0.917  C20 79S 28 
79S C24 C21 C 0 1 N N N N N N 16.341 23.462 25.409 -2.981 1.449  1.998  C24 79S 29 
79S C21 C22 C 0 1 N N N N N N 14.725 23.498 27.328 -2.754 2.183  -0.379 C21 79S 30 
79S C22 C23 C 0 1 N N N N N N 14.202 24.913 27.126 -1.767 2.627  -1.461 C22 79S 31 
79S C23 C24 C 0 1 N N N N N N 15.064 25.934 27.843 -0.746 1.515  -1.706 C23 79S 32 
79S C19 C25 C 0 1 N N N N N N 16.520 25.826 27.399 0.014  1.225  -0.410 C19 79S 33 
79S H1  H1  H 0 1 N N N N N N 20.585 27.396 26.018 0.530  -3.728 -1.247 H1  79S 34 
79S H2  H2  H 0 1 N N N N N N 20.012 19.656 30.647 -7.276 0.688  0.030  H2  79S 35 
79S H3  H3  H 0 1 N N N N N N 19.639 28.464 23.739 3.149  -3.497 -0.662 H3  79S 36 
79S H4  H4  H 0 1 N N N N N N 22.408 22.475 27.559 -4.707 -3.342 -0.962 H4  79S 37 
79S H5  H5  H 0 1 N N N N N N 17.525 20.043 31.173 -6.128 2.828  0.800  H5  79S 38 
79S H6  H6  H 0 1 N N N N N N 18.427 28.475 21.572 4.597  -0.896 -0.978 H6  79S 39 
79S H7  H7  H 0 1 N N N N N N 17.519 32.003 21.625 5.186  0.914  -1.806 H7  79S 40 
79S H8  H8  H 0 1 N N N N N N 18.577 30.560 21.471 6.157  2.395  -1.632 H8  79S 41 
79S H9  H9  H 0 1 N N N N N N 16.944 30.560 20.722 6.871  0.946  -2.379 H9  79S 42 
79S H10 H10 H 0 1 N N N N N N 16.095 30.841 24.660 8.701  0.509  -0.110 H10 79S 43 
79S H11 H11 H 0 1 N N N N N N 17.335 32.000 24.072 8.226  2.221  -0.213 H11 79S 44 
79S H12 H12 H 0 1 N N N N N N 15.710 31.961 23.309 7.939  1.307  1.286  H12 79S 45 
79S H13 H13 H 0 1 N N N N N N 16.574 26.252 22.632 4.440  -2.055 1.250  H13 79S 46 
79S H14 H14 H 0 1 N N N N N N 18.121 26.049 21.741 3.589  -0.627 1.889  H14 79S 47 
79S H15 H15 H 0 1 N N N N N N 16.726 22.138 29.816 -3.567 2.347  0.901  H15 79S 48 
79S H16 H16 H 0 1 N N N N N N 16.807 24.230 28.744 -0.431 0.575  1.594  H16 79S 49 
79S H17 H17 H 0 1 N N N N N N 16.541 22.365 27.235 -1.478 2.795  1.245  H17 79S 50 
79S H18 H18 H 0 1 N N N N N N 17.402 23.359 25.139 -3.478 0.532  1.682  H18 79S 51 
79S H19 H19 H 0 1 N N N N N N 15.761 22.661 24.927 -2.444 1.269  2.929  H19 79S 52 
79S H20 H20 H 0 1 N N N N N N 15.969 24.440 25.069 -3.726 2.230  2.154  H20 79S 53 
79S H21 H21 H 0 1 N N N N N N 14.121 22.807 26.721 -3.271 1.281  -0.707 H21 79S 54 
79S H22 H22 H 0 1 N N N N N N 14.627 23.233 28.391 -3.482 2.975  -0.204 H22 79S 55 
79S H23 H23 H 0 1 N N N N N N 14.198 25.142 26.050 -2.309 2.834  -2.384 H23 79S 56 
79S H24 H24 H 0 1 N N N N N N 13.176 24.974 27.518 -1.251 3.529  -1.133 H24 79S 57 
79S H25 H25 H 0 1 N N N N N N 14.692 26.944 27.614 -1.262 0.613  -2.034 H25 79S 58 
79S H26 H26 H 0 1 N N N N N N 15.004 25.758 28.927 -0.043 1.832  -2.477 H26 79S 59 
79S H27 H27 H 0 1 N N N N N N 17.135 26.543 27.962 0.531  2.128  -0.083 H27 79S 60 
79S H28 H28 H 0 1 N N N N N N 16.598 26.041 26.323 0.742  0.433  -0.586 H28 79S 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
79S N5  C17 TRIP N N 1  
79S C17 C13 SING N N 2  
79S C16 N4  SING N N 3  
79S C13 C12 SING N N 4  
79S C13 C14 SING N N 5  
79S C12 C11 SING N N 6  
79S N4  C14 SING N N 7  
79S N4  C15 SING N N 8  
79S C14 O1  DOUB N N 9  
79S C11 C10 DOUB Y N 10 
79S C11 O   SING Y N 11 
79S C10 C9  SING Y N 12 
79S O   C8  SING Y N 13 
79S C9  C8  DOUB Y N 14 
79S C24 C20 SING N N 15 
79S C8  C7  SING N N 16 
79S C7  N3  DOUB Y N 17 
79S C7  N2  SING Y N 18 
79S N3  C   SING Y N 19 
79S C20 C21 SING N N 20 
79S C20 C18 SING N N 21 
79S C22 C21 SING N N 22 
79S C22 C23 SING N N 23 
79S C19 C18 SING N N 24 
79S C19 C23 SING N N 25 
79S N2  C18 SING N N 26 
79S N2  C1  SING Y N 27 
79S C   C4  DOUB Y N 28 
79S C   C1  SING Y N 29 
79S C4  N   SING Y N 30 
79S C1  C2  DOUB Y N 31 
79S N   C3  DOUB Y N 32 
79S C2  C3  SING Y N 33 
79S C2  C5  SING Y N 34 
79S C3  N1  SING Y N 35 
79S C5  C6  DOUB Y N 36 
79S N1  C6  SING Y N 37 
79S C9  H1  SING N N 38 
79S N1  H2  SING N N 39 
79S C10 H3  SING N N 40 
79S C4  H4  SING N N 41 
79S C6  H5  SING N N 42 
79S C13 H6  SING N N 43 
79S C16 H7  SING N N 44 
79S C16 H8  SING N N 45 
79S C16 H9  SING N N 46 
79S C15 H10 SING N N 47 
79S C15 H11 SING N N 48 
79S C15 H12 SING N N 49 
79S C12 H13 SING N N 50 
79S C12 H14 SING N N 51 
79S C5  H15 SING N N 52 
79S C18 H16 SING N N 53 
79S C20 H17 SING N N 54 
79S C24 H18 SING N N 55 
79S C24 H19 SING N N 56 
79S C24 H20 SING N N 57 
79S C21 H21 SING N N 58 
79S C21 H22 SING N N 59 
79S C22 H23 SING N N 60 
79S C22 H24 SING N N 61 
79S C23 H25 SING N N 62 
79S C23 H26 SING N N 63 
79S C19 H27 SING N N 64 
79S C19 H28 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
79S InChI            InChI                1.03  "InChI=1S/C25H28N6O2/c1-15-6-4-5-7-20(15)31-22-18-10-11-27-23(18)28-14-19(22)29-24(31)21-9-8-17(33-21)12-16(13-26)25(32)30(2)3/h8-11,14-16,20H,4-7,12H2,1-3H3,(H,27,28)/t15-,16+,20+/m1/s1" 
79S InChIKey         InChI                1.03  AMJNKQADUVRGCR-GUXCAODWSA-N                                                                                                                                                                 
79S SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1CCCC[C@@H]1n2c(nc3cnc4[nH]ccc4c23)c5oc(C[C@@H](C#N)C(=O)N(C)C)cc5"                                                                                                                 
79S SMILES           CACTVS               3.385 "C[CH]1CCCC[CH]1n2c(nc3cnc4[nH]ccc4c23)c5oc(C[CH](C#N)C(=O)N(C)C)cc5"                                                                                                                       
79S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C[C@@H]1CCCC[C@@H]1n2c3c4cc[nH]c4ncc3nc2c5ccc(o5)C[C@@H](C#N)C(=O)N(C)C"                                                                                                                   
79S SMILES           "OpenEye OEToolkits" 2.0.5 "CC1CCCCC1n2c3c4cc[nH]c4ncc3nc2c5ccc(o5)CC(C#N)C(=O)N(C)C"                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           79S 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-cyano-~{N},~{N}-dimethyl-3-[5-[3-[(1~{S},2~{R})-2-methylcyclohexyl]-3,5,8,10-tetrazatricyclo[7.3.0.0^{2,6}]dodeca-1,4,6,8,11-pentaen-4-yl]furan-2-yl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
79S "Create component" 2016-09-19 EBI  
79S "Initial release"  2016-10-26 RCSB 
79S "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            79S 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C12 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
