data_D6S
#

_chem_comp.id                                   D6S
_chem_comp.name                                 "(1S,2S,3S,4R,5R)-2-amino-4-[benzyl(methyl)amino]-6,8-dioxabicyclo[3.2.1]octan-3-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H20 N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-10-20
_chem_comp.pdbx_modified_date                   2020-04-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       264.320
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D6S
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5QB9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D6S  C4   C1   C  0  1  Y  N  N  -6.164  -0.099  11.174  -4.042   1.524   0.410  C4   D6S   1  
D6S  C5   C2   C  0  1  Y  N  N  -6.097  -1.447  11.441  -4.981   0.513   0.500  C5   D6S   2  
D6S  C6   C3   C  0  1  Y  N  N  -4.908  -2.120  11.258  -4.680  -0.753   0.033  C6   D6S   3  
D6S  N1   N1   N  0  1  N  N  N   1.947   4.138   9.309   0.888   0.049   2.178  N1   D6S   4  
D6S  C7   C4   C  0  1  Y  N  N  -3.786  -1.442  10.806  -3.441  -1.008  -0.522  C7   D6S   5  
D6S  C8   C5   C  0  1  N  N  R  -1.673   2.970   9.715   1.160  -0.750  -0.684  C8   D6S   6  
D6S  C9   C6   C  0  1  N  N  S  -0.129   3.010  10.051   2.109  -1.179   0.440  C9   D6S   7  
D6S  C10  C7   C  0  1  N  N  S   0.494   3.940   9.011   2.182  -0.068   1.493  C10  D6S   8  
D6S  C11  C8   C  0  1  N  N  S  -0.232   5.283   9.073   2.514   1.255   0.785  C11  D6S   9  
D6S  C12  C9   C  0  1  N  N  N  -1.256   5.462   7.960   3.655   0.978  -0.221  C12  D6S  10  
D6S  C13  C10  C  0  1  N  N  R  -2.148   4.464   9.795   1.577   0.644  -1.179  C13  D6S  11  
D6S  O2   O1   O  0  1  N  N  N   0.375   1.692   9.874   3.411  -1.414  -0.100  O2   D6S  12  
D6S  O1   O2   O  0  1  N  N  N  -1.083   5.280  10.241   1.396   1.567  -0.083  O1   D6S  13  
D6S  O    O3   O  0  1  N  N  N  -2.473   4.936   8.508   2.991   0.622  -1.447  O    D6S  14  
D6S  N    N2   N  0  1  N  N  N  -2.510   2.032  10.592  -0.217  -0.699  -0.173  N    D6S  15  
D6S  C    C11  C  0  1  N  N  N  -2.079   1.993  12.020  -0.615  -1.994   0.395  C    D6S  16  
D6S  C1   C12  C  0  1  N  N  N  -2.633   0.648  10.026  -1.153  -0.275  -1.223  C1   D6S  17  
D6S  C2   C13  C  0  1  Y  N  N  -3.845  -0.088  10.529  -2.502   0.002  -0.611  C2   D6S  18  
D6S  C3   C14  C  0  1  Y  N  N  -5.045   0.580  10.719  -2.805   1.270  -0.151  C3   D6S  19  
D6S  H1   H1   H  0  1  N  N  N  -7.093   0.432  11.320  -4.277   2.513   0.775  H1   D6S  20  
D6S  H2   H2   H  0  1  N  N  N  -6.971  -1.975  11.792  -5.950   0.713   0.934  H2   D6S  21  
D6S  H3   H3   H  0  1  N  N  N  -4.850  -3.178  11.467  -5.414  -1.543   0.103  H3   D6S  22  
D6S  H4   H4   H  0  1  N  N  N   2.419   3.258   9.268   0.909   0.786   2.866  H4   D6S  23  
D6S  H5   H5   H  0  1  N  N  N   2.344   4.761   8.635   0.140   0.193   1.516  H5   D6S  24  
D6S  H7   H7   H  0  1  N  N  N  -2.857  -1.976  10.669  -3.205  -1.998  -0.886  H7   D6S  25  
D6S  H8   H8   H  0  1  N  N  N  -1.776   2.643   8.670   1.220  -1.463  -1.506  H8   D6S  26  
D6S  H9   H9   H  0  1  N  N  N   0.031   3.393  11.070   1.736  -2.094   0.901  H9   D6S  27  
D6S  H10  H10  H  0  1  N  N  N   0.373   3.503   8.009   2.963  -0.301   2.217  H10  D6S  28  
D6S  H11  H11  H  0  1  N  N  N   0.486   6.117   9.085   2.741   2.059   1.485  H11  D6S  29  
D6S  H12  H12  H  0  1  N  N  N  -0.958   4.900   7.063   4.260   1.874  -0.364  H12  D6S  30  
D6S  H13  H13  H  0  1  N  N  N  -1.372   6.526   7.705   4.276   0.153   0.127  H13  D6S  31  
D6S  H14  H14  H  0  1  N  N  N  -3.011   4.530  10.474   0.998   0.945  -2.053  H14  D6S  32  
D6S  H15  H15  H  0  1  N  N  N  -0.013   1.115  10.521   4.065  -1.690   0.557  H15  D6S  33  
D6S  H17  H17  H  0  1  N  N  N  -2.725   1.301  12.580   0.053  -2.252   1.216  H17  D6S  34  
D6S  H18  H18  H  0  1  N  N  N  -1.036   1.649  12.079  -1.638  -1.929   0.765  H18  D6S  35  
D6S  H19  H19  H  0  1  N  N  N  -2.158   3.001  12.454  -0.556  -2.763  -0.376  H19  D6S  36  
D6S  H20  H20  H  0  1  N  N  N  -1.735   0.075  10.303  -0.777   0.631  -1.700  H20  D6S  37  
D6S  H21  H21  H  0  1  N  N  N  -2.698   0.722   8.930  -1.246  -1.065  -1.968  H21  D6S  38  
D6S  H22  H22  H  0  1  N  N  N  -5.108   1.638  10.511  -2.075   2.062  -0.229  H22  D6S  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D6S  C12  O    SING  N  N   1  
D6S  C12  C11  SING  N  N   2  
D6S  O    C13  SING  N  N   3  
D6S  C10  C11  SING  N  N   4  
D6S  C10  N1   SING  N  N   5  
D6S  C10  C9   SING  N  N   6  
D6S  C11  O1   SING  N  N   7  
D6S  C8   C13  SING  N  N   8  
D6S  C8   C9   SING  N  N   9  
D6S  C8   N    SING  N  N  10  
D6S  C13  O1   SING  N  N  11  
D6S  O2   C9   SING  N  N  12  
D6S  C1   C2   SING  N  N  13  
D6S  C1   N    SING  N  N  14  
D6S  C2   C3   DOUB  Y  N  15  
D6S  C2   C7   SING  Y  N  16  
D6S  N    C    SING  N  N  17  
D6S  C3   C4   SING  Y  N  18  
D6S  C7   C6   DOUB  Y  N  19  
D6S  C4   C5   DOUB  Y  N  20  
D6S  C6   C5   SING  Y  N  21  
D6S  C4   H1   SING  N  N  22  
D6S  C5   H2   SING  N  N  23  
D6S  C6   H3   SING  N  N  24  
D6S  N1   H4   SING  N  N  25  
D6S  N1   H5   SING  N  N  26  
D6S  C7   H7   SING  N  N  27  
D6S  C8   H8   SING  N  N  28  
D6S  C9   H9   SING  N  N  29  
D6S  C10  H10  SING  N  N  30  
D6S  C11  H11  SING  N  N  31  
D6S  C12  H12  SING  N  N  32  
D6S  C12  H13  SING  N  N  33  
D6S  C13  H14  SING  N  N  34  
D6S  O2   H15  SING  N  N  35  
D6S  C    H17  SING  N  N  36  
D6S  C    H18  SING  N  N  37  
D6S  C    H19  SING  N  N  38  
D6S  C1   H20  SING  N  N  39  
D6S  C1   H21  SING  N  N  40  
D6S  C3   H22  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D6S  SMILES            ACDLabs               12.01  "c3cccc(CN(C1C2OC(C(N)C1O)CO2)C)c3"  
D6S  InChI             InChI                 1.03   "InChI=1S/C14H20N2O3/c1-16(7-9-5-3-2-4-6-9)12-13(17)11(15)10-8-18-14(12)19-10/h2-6,10-14,17H,7-8,15H2,1H3/t10-,11-,12-,13+,14-/m1/s1"  
D6S  InChIKey          InChI                 1.03   YJSWHNBNNGQGQD-XGFWRYKXSA-N  
D6S  SMILES_CANONICAL  CACTVS                3.385  "CN(Cc1ccccc1)[C@@H]2[C@@H](O)[C@H](N)[C@H]3CO[C@@H]2O3"  
D6S  SMILES            CACTVS                3.385  "CN(Cc1ccccc1)[CH]2[CH](O)[CH](N)[CH]3CO[CH]2O3"  
D6S  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CN(Cc1ccccc1)[C@@H]2[C@H]([C@@H]([C@H]3CO[C@@H]2O3)N)O"  
D6S  SMILES            "OpenEye OEToolkits"  2.0.6  "CN(Cc1ccccc1)C2C(C(C3COC2O3)N)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D6S  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S,3S,4R,5R)-2-amino-4-[benzyl(methyl)amino]-6,8-dioxabicyclo[3.2.1]octan-3-ol (non-preferred name)"  
D6S  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(1~{S},2~{S},3~{S},4~{R},5~{R})-2-azanyl-4-[methyl-(phenylmethyl)amino]-6,8-dioxabicyclo[3.2.1]octan-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D6S  "Create component"  2017-10-20  RCSB  
D6S  "Initial release"   2020-04-22  RCSB  
##
