data_DDS
# 
_chem_comp.id                                    DDS 
_chem_comp.name                                  
;2',3'-dideoxyadenosine triphosphate
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N5 O11 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-03-16 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        475.182 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DDS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3LWL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DDS N1     N1     N 0 1 Y N N 19.802 -16.725 -2.285  -8.132 1.941  0.551  N1     DDS 1  
DDS C2     C2     C 0 1 Y N N 19.584 -17.959 -2.778  -7.626 1.372  1.629  C2     DDS 2  
DDS N3     N3     N 0 1 Y N N 19.653 -18.264 -4.089  -6.486 0.713  1.612  N3     DDS 3  
DDS C4     C4     C 0 1 Y N N 19.959 -17.318 -5.012  -5.790 0.594  0.486  C4     DDS 4  
DDS C5     C5     C 0 1 Y N N 20.208 -15.942 -4.550  -6.287 1.183  -0.690 C5     DDS 5  
DDS C6     C6     C 0 1 Y N N 20.113 -15.683 -3.092  -7.507 1.875  -0.620 C6     DDS 6  
DDS N6     N6     N 0 1 N N N 20.332 -14.443 -2.589  -8.046 2.475  -1.745 N6     DDS 7  
DDS N7     N7     N 0 1 Y N N 20.483 -15.209 -5.645  -5.397 0.917  -1.676 N7     DDS 8  
DDS C8     C8     C 0 1 Y N N 20.413 -16.042 -6.716  -4.411 0.219  -1.193 C8     DDS 9  
DDS N9     N9     N 0 1 Y N N 20.090 -17.297 -6.345  -4.607 -0.006 0.137  N9     DDS 10 
DDS PA     PA     P 0 1 N N N 18.904 -14.278 -10.186 1.863  -1.593 -0.603 PA     DDS 11 
DDS PB     PB     P 0 1 N N N 16.257 -14.291 -11.197 4.512  -0.384 -0.047 PB     DDS 12 
DDS PG     PG     P 0 1 N N N 15.780 -11.623 -11.843 6.214  2.005  0.380  PG     DDS 13 
DDS "C1'"  "C1'"  C 0 1 N N R 19.950 -18.455 -7.271  -3.716 -0.751 1.031  "C1'"  DDS 14 
DDS O1A    O1A    O 0 1 N N N 19.551 -13.909 -8.872  2.399  -2.971 -0.527 O1A    DDS 15 
DDS O1B    O1B    O 0 1 N N N 15.435 -15.500 -10.807 4.926  -0.471 -1.465 O1B    DDS 16 
DDS O1G    O1G    O 0 1 N N N 15.476 -10.501 -10.878 7.440  1.176  0.382  O1G    DDS 17 
DDS "C2'"  "C2'"  C 0 1 N N N 18.567 -19.086 -7.176  -4.186 -2.215 1.137  "C2'"  DDS 18 
DDS O2A    O2A    O 0 1 N N N 19.380 -13.575 -11.434 1.625  -1.195 -2.145 O2A    DDS 19 
DDS O2B    O2B    O 0 1 N N N 16.961 -14.250 -12.534 5.244  -1.542 0.799  O2B    DDS 20 
DDS O2G    O2G    O 0 1 N N N 14.897 -11.628 -13.067 6.113  2.811  -1.010 O2G    DDS 21 
DDS "C3'"  "C3'"  C 0 1 N N N 17.977 -19.021 -8.575  -2.967 -3.039 0.655  "C3'"  DDS 22 
DDS O3A    O3A    O 0 1 N N N 17.324 -14.001 -10.025 2.916  -0.570 0.058  O3A    DDS 23 
DDS O3B    O3B    O 0 1 N N N 15.351 -12.964 -11.062 4.924  1.055  0.545  O3B    DDS 24 
DDS O3G    O3G    O 0 1 N N N 17.252 -11.821 -12.117 6.271  3.050  1.603  O3G    DDS 25 
DDS "C4'"  "C4'"  C 0 1 N N S 18.908 -18.125 -9.378  -1.800 -2.038 0.848  "C4'"  DDS 26 
DDS "O4'"  "O4'"  O 0 1 N N N 20.112 -17.986 -8.615  -2.384 -0.767 0.491  "O4'"  DDS 27 
DDS "C5'"  "C5'"  C 0 1 N N N 18.246 -16.763 -9.583  -0.638 -2.379 -0.086 "C5'"  DDS 28 
DDS "O5'"  "O5'"  O 0 1 N N N 19.031 -15.877 -10.384 0.467  -1.516 0.193  "O5'"  DDS 29 
DDS H2     H2     H 0 1 N N N 19.340 -18.749 -2.083  -8.167 1.450  2.561  H2     DDS 30 
DDS HN6    HN6    H 0 1 N N N 20.225 -14.462 -1.595  -8.890 2.950  -1.684 HN6    DDS 31 
DDS HN6A   HN6A   H 0 0 N N N 21.260 -14.149 -2.819  -7.581 2.420  -2.594 HN6A   DDS 32 
DDS H8     H8     H 0 1 N N N 20.593 -15.737 -7.736  -3.562 -0.130 -1.762 H8     DDS 33 
DDS "H1'"  "H1'"  H 0 1 N N N 20.709 -19.203 -6.996  -3.713 -0.290 2.019  "H1'"  DDS 34 
DDS "H2'"  "H2'"  H 0 1 N N N 18.640 -20.129 -6.835  -4.430 -2.463 2.170  "H2'"  DDS 35 
DDS "H2'A" "H2'A" H 0 0 N N N 17.937 -18.533 -6.464  -5.044 -2.388 0.488  "H2'A" DDS 36 
DDS "H3'"  "H3'"  H 0 1 N N N 17.923 -20.025 -9.021  -2.827 -3.925 1.274  "H3'"  DDS 37 
DDS "H3'A" "H3'A" H 0 0 N N N 16.961 -18.601 -8.549  -3.074 -3.314 -0.395 "H3'A" DDS 38 
DDS "H4'"  "H4'"  H 0 1 N N N 19.127 -18.552 -10.368 -1.470 -2.031 1.887  "H4'"  DDS 39 
DDS "H5'"  "H5'"  H 0 1 N N N 17.280 -16.920 -10.086 -0.338 -3.415 0.070  "H5'"  DDS 40 
DDS "H5'A" "H5'A" H 0 0 N N N 18.098 -16.298 -8.597  -0.952 -2.243 -1.121 "H5'A" DDS 41 
DDS HO2A   HO2A   H 0 0 N N N 20.065 -12.957 -11.208 1.273  -0.303 -2.271 HO2A   DDS 42 
DDS HO2B   HO2B   H 0 0 N N N 16.788 -15.055 -13.008 5.018  -1.545 1.739  HO2B   DDS 43 
DDS HO2G   HO2G   H 0 0 N N N 14.284 -10.904 -13.019 5.331  3.376  -1.081 HO2G   DDS 44 
DDS HO3G   HO3G   H 0 0 N N N 17.755 -11.186 -11.620 7.024  3.655  1.569  HO3G   DDS 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DDS N1    C2     DOUB Y N 1  
DDS N1    C6     SING Y N 2  
DDS C2    N3     SING Y N 3  
DDS N3    C4     DOUB Y N 4  
DDS C4    C5     SING Y N 5  
DDS C4    N9     SING Y N 6  
DDS C5    C6     DOUB Y N 7  
DDS C5    N7     SING Y N 8  
DDS C6    N6     SING N N 9  
DDS N7    C8     DOUB Y N 10 
DDS C8    N9     SING Y N 11 
DDS N9    "C1'"  SING N N 12 
DDS PA    O1A    DOUB N N 13 
DDS PA    O2A    SING N N 14 
DDS PA    O3A    SING N N 15 
DDS PA    "O5'"  SING N N 16 
DDS PB    O1B    DOUB N N 17 
DDS PB    O2B    SING N N 18 
DDS PB    O3A    SING N N 19 
DDS PB    O3B    SING N N 20 
DDS PG    O1G    DOUB N N 21 
DDS PG    O2G    SING N N 22 
DDS PG    O3B    SING N N 23 
DDS PG    O3G    SING N N 24 
DDS "C1'" "C2'"  SING N N 25 
DDS "C1'" "O4'"  SING N N 26 
DDS "C2'" "C3'"  SING N N 27 
DDS "C3'" "C4'"  SING N N 28 
DDS "C4'" "O4'"  SING N N 29 
DDS "C4'" "C5'"  SING N N 30 
DDS "C5'" "O5'"  SING N N 31 
DDS C2    H2     SING N N 32 
DDS N6    HN6    SING N N 33 
DDS N6    HN6A   SING N N 34 
DDS C8    H8     SING N N 35 
DDS "C1'" "H1'"  SING N N 36 
DDS "C2'" "H2'"  SING N N 37 
DDS "C2'" "H2'A" SING N N 38 
DDS "C3'" "H3'"  SING N N 39 
DDS "C3'" "H3'A" SING N N 40 
DDS "C4'" "H4'"  SING N N 41 
DDS "C5'" "H5'"  SING N N 42 
DDS "C5'" "H5'A" SING N N 43 
DDS O2A   HO2A   SING N N 44 
DDS O2B   HO2B   SING N N 45 
DDS O2G   HO2G   SING N N 46 
DDS O3G   HO3G   SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DDS SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@H]3CC[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                             
DDS SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                
DDS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3CC[C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)N"                                                                                                         
DDS SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3CCC(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N"                                                                                                                        
DDS InChI            InChI                1.03  "InChI=1S/C10H16N5O11P3/c11-9-8-10(13-4-12-9)15(5-14-8)7-2-1-6(24-7)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h4-7H,1-3H2,(H,19,20)(H,21,22)(H2,11,12,13)(H2,16,17,18)/t6-,7+/m0/s1" 
DDS InChIKey         InChI                1.03  OAKPWEUQDVLTCN-NKWVEPMBSA-N                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DDS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[[(2S,5R)-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DDS "Create component"     2010-03-16 PDBJ 
DDS "Modify aromatic_flag" 2011-06-04 RCSB 
DDS "Modify descriptor"    2011-06-04 RCSB 
# 
