data_L7S
# 
_chem_comp.id                                    L7S 
_chem_comp.name                                  "3-[(3R)-1-ethyl-2,5-dioxopyrrolidin-3-yl]benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H14 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        246.262 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L7S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4US2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L7S C    C    C 0 1 N N N N N N 67.547 63.390 53.879 -4.021 1.892  -0.518 C    L7S 1  
L7S N    N    N 0 1 N N N N N N 66.673 61.047 53.862 -2.863 -0.254 -0.322 N    L7S 2  
L7S O    O    O 0 1 N N N N N N 68.634 59.992 54.453 -3.770 -0.812 1.680  O    L7S 3  
L7S C1   C1   C 0 1 N N N N N N 66.852 62.292 54.641 -4.049 0.404  -0.875 C1   L7S 4  
L7S N1   N1   N 0 1 N N N N N N 64.583 56.485 47.654 5.290  0.484  0.036  N1   L7S 5  
L7S O1   O1   O 0 1 N N N N N N 64.578 61.491 53.003 -1.517 0.049  -2.121 O1   L7S 6  
L7S C2   C2   C 0 1 N N N N N N 67.647 60.072 53.744 -2.841 -0.797 0.902  C2   L7S 7  
L7S O2   O2   O 0 1 N N N N N N 65.263 55.224 49.410 4.394  -1.409 -0.703 O2   L7S 8  
L7S C3   C3   C 0 1 N N N N N N 67.189 59.030 52.720 -1.472 -1.389 1.159  C3   L7S 9  
L7S C4   C4   C 0 1 N N R N N N 65.660 59.289 52.721 -0.699 -1.091 -0.142 C4   L7S 10 
L7S C5   C5   C 0 1 N N N N N N 65.510 60.727 53.195 -1.714 -0.366 -0.999 C5   L7S 11 
L7S C6   C6   C 0 1 Y N N N N N 64.676 58.884 51.634 0.491  -0.209 0.138  C6   L7S 12 
L7S C7   C7   C 0 1 Y N N N N N 63.308 59.059 51.842 0.306  1.044  0.693  C7   L7S 13 
L7S C8   C8   C 0 1 Y N N N N N 62.383 58.314 51.127 1.393  1.860  0.953  C8   L7S 14 
L7S C9   C9   C 0 1 Y N N N N N 62.812 57.401 50.179 2.669  1.427  0.661  C9   L7S 15 
L7S C10  C10  C 0 1 Y N N N N N 64.171 57.260 49.910 2.863  0.163  0.101  C10  L7S 16 
L7S C11  C11  C 0 1 Y N N N N N 65.089 58.034 50.615 1.763  -0.657 -0.154 C11  L7S 17 
L7S C12  C12  C 0 1 N N N N N N 64.698 56.237 48.959 4.228  -0.308 -0.216 C12  L7S 18 
L7S H    H    H 0 1 N N N N N N 67.643 64.278 54.521 -3.123 2.349  -0.936 H    L7S 19 
L7S HA   HA   H 0 1 N N N N N N 68.547 63.048 53.574 -4.903 2.381  -0.930 HA   L7S 20 
L7S HB   HB   H 0 1 N N N N N N 66.959 63.645 52.985 -4.015 2.005  0.566  HB   L7S 21 
L7S H1   H1   H 0 1 N N N N N N 67.448 62.059 55.535 -4.946 -0.053 -0.458 H1   L7S 22 
L7S H1A  H1A  H 0 1 N N N N N N 65.860 62.656 54.946 -4.055 0.291  -1.959 H1A  L7S 23 
L7S HN1  HN1  H 0 1 N N N N N N 64.960 55.842 46.988 6.185  0.175  -0.171 HN1  L7S 24 
L7S HN1A HN1A H 0 0 N N N N N N 64.119 57.314 47.342 5.157  1.363  0.425  HN1A L7S 25 
L7S H3   H3   H 0 1 N N N N N N 67.631 59.212 51.729 -0.996 -0.900 2.009  H3   L7S 26 
L7S H3A  H3A  H 0 1 N N N N N N 67.428 58.007 53.046 -1.544 -2.464 1.324  H3A  L7S 27 
L7S H4   H4   H 0 1 N N N N N N 65.318 58.708 53.590 -0.387 -2.017 -0.624 H4   L7S 28 
L7S H7   H7   H 0 1 N N N N N N 62.966 59.782 52.567 -0.692 1.388  0.924  H7   L7S 29 
L7S H8   H8   H 0 1 N N N N N N 61.327 58.446 51.310 1.242  2.837  1.387  H8   L7S 30 
L7S H9   H9   H 0 1 N N N N N N 62.092 56.797 49.647 3.517  2.064  0.864  H9   L7S 31 
L7S H11  H11  H 0 1 N N N N N N 66.138 57.973 50.366 1.906  -1.638 -0.583 H11  L7S 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L7S C   C1   SING N N 1  
L7S N   C1   SING N N 2  
L7S N   C2   SING N N 3  
L7S N   C5   SING N N 4  
L7S O   C2   DOUB N N 5  
L7S N1  C12  SING N N 6  
L7S O1  C5   DOUB N N 7  
L7S C2  C3   SING N N 8  
L7S O2  C12  DOUB N N 9  
L7S C3  C4   SING N N 10 
L7S C4  C5   SING N N 11 
L7S C4  C6   SING N N 12 
L7S C6  C7   DOUB Y N 13 
L7S C6  C11  SING Y N 14 
L7S C7  C8   SING Y N 15 
L7S C8  C9   DOUB Y N 16 
L7S C9  C10  SING Y N 17 
L7S C10 C11  DOUB Y N 18 
L7S C10 C12  SING N N 19 
L7S C   H    SING N N 20 
L7S C   HA   SING N N 21 
L7S C   HB   SING N N 22 
L7S C1  H1   SING N N 23 
L7S C1  H1A  SING N N 24 
L7S N1  HN1  SING N N 25 
L7S N1  HN1A SING N N 26 
L7S C3  H3   SING N N 27 
L7S C3  H3A  SING N N 28 
L7S C4  H4   SING N N 29 
L7S C7  H7   SING N N 30 
L7S C8  H8   SING N N 31 
L7S C9  H9   SING N N 32 
L7S C11 H11  SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L7S SMILES           ACDLabs              12.01 "O=C2N(C(=O)CC2c1cccc(C(=O)N)c1)CC"                                                                               
L7S InChI            InChI                1.03  "InChI=1S/C13H14N2O3/c1-2-15-11(16)7-10(13(15)18)8-4-3-5-9(6-8)12(14)17/h3-6,10H,2,7H2,1H3,(H2,14,17)/t10-/m1/s1" 
L7S InChIKey         InChI                1.03  XGUUYQHDALENIF-SNVBAGLBSA-N                                                                                       
L7S SMILES_CANONICAL CACTVS               3.385 "CCN1C(=O)C[C@@H](C1=O)c2cccc(c2)C(N)=O"                                                                          
L7S SMILES           CACTVS               3.385 "CCN1C(=O)C[CH](C1=O)c2cccc(c2)C(N)=O"                                                                            
L7S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCN1C(=O)C[C@@H](C1=O)c2cccc(c2)C(=O)N"                                                                          
L7S SMILES           "OpenEye OEToolkits" 1.7.6 "CCN1C(=O)CC(C1=O)c2cccc(c2)C(=O)N"                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
L7S "SYSTEMATIC NAME" ACDLabs              12.01 "3-[(3R)-1-ethyl-2,5-dioxopyrrolidin-3-yl]benzamide"              
L7S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[(3R)-1-ethyl-2,5-bis(oxidanylidene)pyrrolidin-3-yl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L7S "Create component" 2014-07-02 EBI  
L7S "Initial release"  2015-03-04 RCSB 
L7S "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            L7S 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C3 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
