data_T4S
#

_chem_comp.id                                   T4S
_chem_comp.name                                 "1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-4-HYDROSELENO-5-METHYLPYRIMIDIN-2(1H)-ONE"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C10 H15 N2 O7 P Se"
_chem_comp.mon_nstd_parent_comp_id              DT
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-11-06
_chem_comp.pdbx_modified_date                   2011-06-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       385.169
_chem_comp.one_letter_code                      T
_chem_comp.three_letter_code                    T4S
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       2NSK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T4S  OP3     O3P   O   0  1  N  Y  N  2.849  13.226   5.199  ?  ?  ?  OP3     T4S   1  
T4S  P       P     P   0  1  N  N  N  4.155  12.556   4.527  ?  ?  ?  P       T4S   2  
T4S  OP1     O1P   O   0  1  N  N  N  4.040  12.849   3.058  ?  ?  ?  OP1     T4S   3  
T4S  OP2     O2P   O   0  1  N  N  N  4.353  11.191   4.967  ?  ?  ?  OP2     T4S   4  
T4S  "O5'"   O5*   O   0  1  N  N  N  5.361  13.407   5.139  ?  ?  ?  "O5'"   T4S   5  
T4S  N1      N1    N   0  1  N  N  N  7.627  13.865   8.359  ?  ?  ?  N1      T4S   6  
T4S  C6      C6    C   0  1  N  N  N  6.641  12.986   7.988  ?  ?  ?  C6      T4S   7  
T4S  C2      C2    C   0  1  N  N  N  8.486  13.591   9.413  ?  ?  ?  C2      T4S   8  
T4S  O2      O2    O   0  1  N  N  N  9.392  14.343   9.740  ?  ?  ?  O2      T4S   9  
T4S  N3      N3    N   0  1  N  N  N  8.263  12.381  10.058  ?  ?  ?  N3      T4S  10  
T4S  C4      C4    C   0  1  N  N  N  7.305  11.426   9.735  ?  ?  ?  C4      T4S  11  
T4S  SE      SE    SE  0  0  N  N  N  7.086   9.919  10.541  ?  ?  ?  SE      T4S  12  
T4S  C5      C5    C   0  1  N  N  N  6.436  11.774   8.602  ?  ?  ?  C5      T4S  13  
T4S  C5A     C5A   C   0  1  N  N  N  5.380  10.806   8.173  ?  ?  ?  C5A     T4S  14  
T4S  "C2'"   C2*   C   0  1  N  N  N  8.789  14.856   6.477  ?  ?  ?  "C2'"   T4S  15  
T4S  "C5'"   C5*   C   0  1  N  N  N  5.363  14.821   5.029  ?  ?  ?  "C5'"   T4S  16  
T4S  "C4'"   C4*   C   0  1  N  N  R  6.625  15.411   5.614  ?  ?  ?  "C4'"   T4S  17  
T4S  "O4'"   O4*   O   0  1  N  N  N  6.543  15.365   7.062  ?  ?  ?  "O4'"   T4S  18  
T4S  "C1'"   C1*   C   0  1  N  N  R  7.849  15.152   7.620  ?  ?  ?  "C1'"   T4S  19  
T4S  "C3'"   C3*   C   0  1  N  N  S  7.887  14.635   5.274  ?  ?  ?  "C3'"   T4S  20  
T4S  "O3'"   O3*   O   0  1  N  N  N  8.530  15.121   4.123  ?  ?  ?  "O3'"   T4S  21  
T4S  HOP3    3HOP  H   0  0  N  N  N  3.002  13.358   6.127  ?  ?  ?  HOP3    T4S  22  
T4S  HOP2    2HOP  H   0  0  N  N  N  4.396  10.617   4.211  ?  ?  ?  HOP2    T4S  23  
T4S  H6      H6    H   0  1  N  N  N  5.992  13.261   7.170  ?  ?  ?  H6      T4S  24  
T4S  HSE     HSE   H   0  1  N  N  N  7.022   8.814   9.528  ?  ?  ?  HSE     T4S  25  
T4S  H5A1    1H5A  H   0  0  N  N  N  4.730  10.568   9.028  ?  ?  ?  H5A1    T4S  26  
T4S  H5A2    2H5A  H   0  0  N  N  N  4.778  11.253   7.369  ?  ?  ?  H5A2    T4S  27  
T4S  H5A3    3H5A  H   0  0  N  N  N  5.855   9.884   7.806  ?  ?  ?  H5A3    T4S  28  
T4S  "H2'"   1H2*  H   0  1  N  N  N  9.394  13.961   6.686  ?  ?  ?  "H2'"   T4S  29  
T4S  "H2''"  2H2*  H   0  0  N  N  N  9.504  15.675   6.310  ?  ?  ?  "H2''"  T4S  30  
T4S  "H5'"   1H5*  H   0  1  N  N  N  5.300  15.096   3.966  ?  ?  ?  "H5'"   T4S  31  
T4S  "H5''"  2H5*  H   0  0  N  N  N  4.501  15.217   5.586  ?  ?  ?  "H5''"  T4S  32  
T4S  "H4'"   H4*   H   0  1  N  N  N  6.692  16.425   5.193  ?  ?  ?  "H4'"   T4S  33  
T4S  "H1'"   H1*   H   0  1  N  N  N  8.248  15.983   8.220  ?  ?  ?  "H1'"   T4S  34  
T4S  "H3'"   H3*   H   0  1  N  N  N  7.654  13.580   5.067  ?  ?  ?  "H3'"   T4S  35  
T4S  "HO3'"  H3T   H   0  0  N  Y  N  7.893  15.231   3.426  ?  ?  ?  "HO3'"  T4S  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T4S  OP3    P       SING  N  N   1  
T4S  OP3    HOP3    SING  N  N   2  
T4S  P      OP1     DOUB  N  N   3  
T4S  P      OP2     SING  N  N   4  
T4S  P      "O5'"   SING  N  N   5  
T4S  OP2    HOP2    SING  N  N   6  
T4S  "O5'"  "C5'"   SING  N  N   7  
T4S  N1     "C1'"   SING  N  N   8  
T4S  N1     C6      SING  N  N   9  
T4S  N1     C2      SING  N  N  10  
T4S  C6     C5      DOUB  N  N  11  
T4S  C6     H6      SING  N  N  12  
T4S  C2     O2      DOUB  N  N  13  
T4S  C2     N3      SING  N  N  14  
T4S  N3     C4      DOUB  N  N  15  
T4S  C4     C5      SING  N  N  16  
T4S  C4     SE      SING  N  N  17  
T4S  SE     HSE     SING  N  N  18  
T4S  C5     C5A     SING  N  N  19  
T4S  C5A    H5A1    SING  N  N  20  
T4S  C5A    H5A2    SING  N  N  21  
T4S  C5A    H5A3    SING  N  N  22  
T4S  "C2'"  "C3'"   SING  N  N  23  
T4S  "C2'"  "C1'"   SING  N  N  24  
T4S  "C2'"  "H2'"   SING  N  N  25  
T4S  "C2'"  "H2''"  SING  N  N  26  
T4S  "C5'"  "C4'"   SING  N  N  27  
T4S  "C5'"  "H5'"   SING  N  N  28  
T4S  "C5'"  "H5''"  SING  N  N  29  
T4S  "C4'"  "C3'"   SING  N  N  30  
T4S  "C4'"  "O4'"   SING  N  N  31  
T4S  "C4'"  "H4'"   SING  N  N  32  
T4S  "O4'"  "C1'"   SING  N  N  33  
T4S  "C1'"  "H1'"   SING  N  N  34  
T4S  "C3'"  "O3'"   SING  N  N  35  
T4S  "C3'"  "H3'"   SING  N  N  36  
T4S  "O3'"  "HO3'"  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T4S  SMILES            ACDLabs               10.04  "O=C1N=C([SeH])C(=CN1C2OC(C(O)C2)COP(=O)(O)O)C"  
T4S  SMILES_CANONICAL  CACTVS                3.341  "CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N=C1[SeH]"  
T4S  SMILES            CACTVS                3.341  "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)N=C1[SeH]"  
T4S  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC1=CN(C(=O)N=C1[SeH])[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O"  
T4S  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1=CN(C(=O)N=C1[SeH])C2CC(C(O2)COP(=O)(O)O)O"  
T4S  InChI             InChI                 1.03   "InChI=1S/C10H15N2O7PSe/c1-5-3-12(10(14)11-9(5)21)8-2-6(13)7(19-8)4-18-20(15,16)17/h3,6-8,13H,2,4H2,1H3,(H,11,14,21)(H2,15,16,17)/t6-,7+,8+/m0/s1"  
T4S  InChIKey          InChI                 1.03   HXENXQZDSWUILN-XLPZGREQSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T4S  "SYSTEMATIC NAME"  ACDLabs               10.04  "1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-5-methyl-4-selanylpyrimidin-2(1H)-one"  
T4S  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2-oxo-4-selanyl-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T4S  "Create component"   2006-11-06  PDBJ  
T4S  "Modify descriptor"  2011-06-04  RCSB  
##
