data_VBS
#

_chem_comp.id                                   VBS
_chem_comp.name                                 "(3S)-3-benzyl-5-[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]-3-methyl-1,3-dihydro-2H-indol-2-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H25 N7 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-24
_chem_comp.pdbx_modified_date                   2020-12-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       475.544
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VBS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JIS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VBS  C1   C1   C  0  1  Y  N  N  36.678  14.205  33.344   2.089   1.276  -0.130  C1   VBS   1  
VBS  C2   C2   C  0  1  Y  N  N  35.759  15.145  32.839   3.050   2.236   0.246  C2   VBS   2  
VBS  C4   C3   C  0  1  Y  N  N  36.951  16.869  33.763   1.459   3.882   0.040  C4   VBS   3  
VBS  C6   C4   C  0  1  Y  N  N  37.768  14.719  34.105   0.784   1.722  -0.416  C6   VBS   4  
VBS  C7   C5   C  0  1  Y  N  N  38.830  13.869  34.728  -0.273   0.766  -0.817  C7   VBS   5  
VBS  C8   C6   C  0  1  Y  N  N  40.088  14.422  35.059  -1.597   0.976  -0.422  C8   VBS   6  
VBS  C11  C7   C  0  1  Y  N  N  39.601  11.732  35.555  -0.938  -1.235  -1.970  C11  VBS   7  
VBS  C12  C8   C  0  1  Y  N  N  38.605  12.512  35.005   0.045  -0.347  -1.596  C12  VBS   8  
VBS  N13  N1   N  0  1  N  N  N  41.963  11.699  36.453  -3.408  -1.779  -1.821  N13  VBS   9  
VBS  C16  C9   C  0  1  N  N  S  42.485  13.912  36.080  -4.059   0.022  -0.545  C16  VBS  10  
VBS  C17  C10  C  0  1  N  N  N  43.387  14.481  34.965  -4.335  -0.081   0.957  C17  VBS  11  
VBS  C18  C11  C  0  1  Y  N  N  43.664  13.597  33.762  -5.816  -0.243   1.186  C18  VBS  12  
VBS  C19  C12  C  0  1  Y  N  N  42.984  13.815  32.570  -6.617   0.872   1.344  C19  VBS  13  
VBS  C21  C13  C  0  1  Y  N  N  44.203  12.024  31.507  -8.534  -0.540   1.594  C21  VBS  14  
VBS  C23  C14  C  0  1  Y  N  N  44.636  12.603  33.804  -6.374  -1.507   1.231  C23  VBS  15  
VBS  C24  C15  C  0  1  N  N  N  42.412  14.955  37.207  -4.766   1.243  -1.136  C24  VBS  16  
VBS  C31  C16  C  0  1  Y  N  N  33.027   9.949  30.531   6.713  -2.871   0.544  C31  VBS  17  
VBS  C33  C17  C  0  1  Y  N  N  35.043  10.971  30.990   4.514  -2.205   0.501  C33  VBS  18  
VBS  C34  C18  C  0  1  N  N  N  32.294   8.789  29.905   7.714  -3.992   0.651  C34  VBS  19  
VBS  C35  C19  C  0  1  N  N  N  33.689  15.119  31.502   5.500   2.113   0.876  C35  VBS  20  
VBS  C36  C20  C  0  1  N  N  N  32.752  15.807  32.500   6.265   2.593  -0.359  C36  VBS  21  
VBS  N3   N2   N  0  1  Y  N  N  35.919  16.440  33.069   2.693   3.512   0.317  N3   VBS  22  
VBS  N5   N3   N  0  1  Y  N  N  37.852  16.044  34.246   0.524   3.024  -0.317  N5   VBS  23  
VBS  C9   C21  C  0  1  Y  N  N  41.072  13.628  35.613  -2.570   0.084  -0.799  C9   VBS  24  
VBS  C10  C22  C  0  1  Y  N  N  40.842  12.285  35.878  -2.259  -1.031  -1.571  C10  VBS  25  
VBS  C14  C23  C  0  1  N  N  N  42.965  12.571  36.612  -4.501  -1.241  -1.253  C14  VBS  26  
VBS  O15  O1   O  0  1  N  N  N  44.047  12.314  37.097  -5.629  -1.684  -1.300  O15  VBS  27  
VBS  C20  C24  C  0  1  Y  N  N  43.244  13.027  31.451  -7.976   0.724   1.549  C20  VBS  28  
VBS  C22  C25  C  0  1  Y  N  N  44.898  11.812  32.689  -7.732  -1.656   1.440  C22  VBS  29  
VBS  N25  N4   N  0  1  Y  N  N  34.804  14.444  32.161   4.215   1.544   0.464  N25  VBS  30  
VBS  C26  C26  C  0  1  Y  N  N  35.121  13.112  32.249   3.951   0.220   0.224  C26  VBS  31  
VBS  N27  N5   N  0  1  Y  N  N  36.236  12.978  32.944   2.693   0.075  -0.120  N27  VBS  32  
VBS  C28  C27  C  0  1  Y  N  N  34.361  11.997  31.653   4.933  -0.879   0.341  C28  VBS  33  
VBS  C29  C28  C  0  1  Y  N  N  32.957  11.924  31.718   6.308  -0.623   0.295  C29  VBS  34  
VBS  N30  N6   N  0  1  Y  N  N  32.335  10.896  31.153   7.151  -1.636   0.394  N30  VBS  35  
VBS  N32  N7   N  0  1  Y  N  N  34.353   9.983  30.446   5.426  -3.156   0.597  N32  VBS  36  
VBS  H1   H1   H  0  1  N  N  N  37.060  17.929  33.941   1.204   4.930   0.108  H1   VBS  37  
VBS  H2   H2   H  0  1  N  N  N  40.280  15.469  34.878  -1.854   1.836   0.178  H2   VBS  38  
VBS  H3   H3   H  0  1  N  N  N  39.419  10.683  35.738  -0.684  -2.096  -2.570  H3   VBS  39  
VBS  H4   H4   H  0  1  N  N  N  37.643  12.074  34.785   1.066  -0.511  -1.908  H4   VBS  40  
VBS  H5   H5   H  0  1  N  N  N  42.015  10.736  36.718  -3.417  -2.599  -2.338  H5   VBS  41  
VBS  H6   H6   H  0  1  N  N  N  44.357  14.729  35.421  -3.808  -0.943   1.365  H6   VBS  42  
VBS  H7   H7   H  0  1  N  N  N  42.911  15.401  34.594  -3.988   0.825   1.453  H7   VBS  43  
VBS  H8   H8   H  0  1  N  N  N  42.247  14.602  32.510  -6.181   1.860   1.309  H8   VBS  44  
VBS  H9   H9   H  0  1  N  N  N  44.406  11.415  30.639  -9.595  -0.656   1.758  H9   VBS  45  
VBS  H10  H10  H  0  1  N  N  N  45.195  12.443  34.714  -5.749  -2.378   1.103  H10  VBS  46  
VBS  H11  H11  H  0  1  N  N  N  41.773  14.575  38.018  -5.843   1.143  -0.997  H11  VBS  47  
VBS  H12  H12  H  0  1  N  N  N  43.423  15.146  37.596  -4.417   2.145  -0.632  H12  VBS  48  
VBS  H13  H13  H  0  1  N  N  N  41.987  15.890  36.814  -4.542   1.313  -2.200  H13  VBS  49  
VBS  H14  H14  H  0  1  N  N  N  36.121  10.986  30.923   3.463  -2.447   0.541  H14  VBS  50  
VBS  H15  H15  H  0  1  N  N  N  33.019   8.103  29.443   7.976  -4.146   1.698  H15  VBS  51  
VBS  H16  H16  H  0  1  N  N  N  31.725   8.254  30.680   7.280  -4.907   0.247  H16  VBS  52  
VBS  H17  H17  H  0  1  N  N  N  31.603   9.164  29.136   8.610  -3.735   0.087  H17  VBS  53  
VBS  H18  H18  H  0  1  N  N  N  34.092  15.877  30.814   6.085   1.352   1.393  H18  VBS  54  
VBS  H19  H19  H  0  1  N  N  N  33.113  14.375  30.931   5.326   2.955   1.546  H19  VBS  55  
VBS  H20  H20  H  0  1  N  N  N  31.932  16.298  31.955   7.221   3.017  -0.052  H20  VBS  56  
VBS  H21  H21  H  0  1  N  N  N  32.336  15.057  33.189   6.439   1.751  -1.029  H21  VBS  57  
VBS  H22  H22  H  0  1  N  N  N  33.315  16.559  33.072   5.680   3.354  -0.876  H22  VBS  58  
VBS  H23  H23  H  0  1  N  N  N  42.697  13.197  30.535  -8.602   1.595   1.669  H23  VBS  59  
VBS  H24  H24  H  0  1  N  N  N  45.643  11.032  32.744  -8.168  -2.643   1.476  H24  VBS  60  
VBS  H25  H25  H  0  1  N  N  N  32.392  12.695  32.221   6.674   0.385   0.173  H25  VBS  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VBS  C34  C31  SING  N  N   1  
VBS  N32  C31  DOUB  Y  N   2  
VBS  N32  C33  SING  Y  N   3  
VBS  C31  N30  SING  Y  N   4  
VBS  C33  C28  DOUB  Y  N   5  
VBS  N30  C29  DOUB  Y  N   6  
VBS  C20  C21  DOUB  Y  N   7  
VBS  C20  C19  SING  Y  N   8  
VBS  C35  N25  SING  N  N   9  
VBS  C35  C36  SING  N  N  10  
VBS  C21  C22  SING  Y  N  11  
VBS  C28  C29  SING  Y  N  12  
VBS  C28  C26  SING  N  N  13  
VBS  N25  C26  SING  Y  N  14  
VBS  N25  C2   SING  Y  N  15  
VBS  C26  N27  DOUB  Y  N  16  
VBS  C19  C18  DOUB  Y  N  17  
VBS  C22  C23  DOUB  Y  N  18  
VBS  C2   N3   DOUB  Y  N  19  
VBS  C2   C1   SING  Y  N  20  
VBS  N27  C1   SING  Y  N  21  
VBS  N3   C4   SING  Y  N  22  
VBS  C1   C6   DOUB  Y  N  23  
VBS  C18  C23  SING  Y  N  24  
VBS  C18  C17  SING  N  N  25  
VBS  C4   N5   DOUB  Y  N  26  
VBS  C6   N5   SING  Y  N  27  
VBS  C6   C7   SING  N  N  28  
VBS  C7   C12  DOUB  Y  N  29  
VBS  C7   C8   SING  Y  N  30  
VBS  C17  C16  SING  N  N  31  
VBS  C12  C11  SING  Y  N  32  
VBS  C8   C9   DOUB  Y  N  33  
VBS  C11  C10  DOUB  Y  N  34  
VBS  C9   C10  SING  Y  N  35  
VBS  C9   C16  SING  N  N  36  
VBS  C10  N13  SING  N  N  37  
VBS  C16  C14  SING  N  N  38  
VBS  C16  C24  SING  N  N  39  
VBS  N13  C14  SING  N  N  40  
VBS  C14  O15  DOUB  N  N  41  
VBS  C4   H1   SING  N  N  42  
VBS  C8   H2   SING  N  N  43  
VBS  C11  H3   SING  N  N  44  
VBS  C12  H4   SING  N  N  45  
VBS  N13  H5   SING  N  N  46  
VBS  C17  H6   SING  N  N  47  
VBS  C17  H7   SING  N  N  48  
VBS  C19  H8   SING  N  N  49  
VBS  C21  H9   SING  N  N  50  
VBS  C23  H10  SING  N  N  51  
VBS  C24  H11  SING  N  N  52  
VBS  C24  H12  SING  N  N  53  
VBS  C24  H13  SING  N  N  54  
VBS  C33  H14  SING  N  N  55  
VBS  C34  H15  SING  N  N  56  
VBS  C34  H16  SING  N  N  57  
VBS  C34  H17  SING  N  N  58  
VBS  C35  H18  SING  N  N  59  
VBS  C35  H19  SING  N  N  60  
VBS  C36  H20  SING  N  N  61  
VBS  C36  H21  SING  N  N  62  
VBS  C36  H22  SING  N  N  63  
VBS  C20  H23  SING  N  N  64  
VBS  C22  H24  SING  N  N  65  
VBS  C29  H25  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VBS  SMILES            ACDLabs               12.01  "c12c(ncnc1n(CC)c(n2)c3cnc(nc3)C)c5ccc6NC(C(C)(Cc4ccccc4)c6c5)=O"  
VBS  InChI             InChI                 1.03   "InChI=1S/C28H25N7O/c1-4-35-25(20-14-29-17(2)30-15-20)34-24-23(31-16-32-26(24)35)19-10-11-22-21(12-19)28(3,27(36)33-22)13-18-8-6-5-7-9-18/h5-12,14-16H,4,13H2,1-3H3,(H,33,36)/t28-/m0/s1"  
VBS  InChIKey          InChI                 1.03   FFRRAJYYORCXFZ-NDEPHWFRSA-N  
VBS  SMILES_CANONICAL  CACTVS                3.385  "CCn1c(nc2c1ncnc2c3ccc4NC(=O)[C@@](C)(Cc5ccccc5)c4c3)c6cnc(C)nc6"  
VBS  SMILES            CACTVS                3.385  "CCn1c(nc2c1ncnc2c3ccc4NC(=O)[C](C)(Cc5ccccc5)c4c3)c6cnc(C)nc6"  
VBS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCn1c2c(c(ncn2)c3ccc4c(c3)[C@](C(=O)N4)(C)Cc5ccccc5)nc1c6cnc(nc6)C"  
VBS  SMILES            "OpenEye OEToolkits"  2.0.7  "CCn1c2c(c(ncn2)c3ccc4c(c3)C(C(=O)N4)(C)Cc5ccccc5)nc1c6cnc(nc6)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VBS  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3S)-3-benzyl-5-[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]-3-methyl-1,3-dihydro-2H-indol-2-one"  
VBS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{S})-5-[9-ethyl-8-(2-methylpyrimidin-5-yl)purin-6-yl]-3-methyl-3-(phenylmethyl)-1~{H}-indol-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VBS  "Create component"  2020-07-24  RCSB  
VBS  "Initial release"   2020-12-30  RCSB  
##
