data_YDS
# 
_chem_comp.id                                    YDS 
_chem_comp.name                                  "N-{5-cyano-2-[(4-methyl-5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl)methoxy]phenyl}-2,2-dimethylpropanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H19 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        329.354 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YDS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G6P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YDS C11 C1  C 0 1 N N N N N N -14.226 6.496  47.059 -2.007 1.181  0.037  C11 YDS 1  
YDS C15 C2  C 0 1 N N N N N N -14.982 9.456  49.265 -5.247 -0.532 0.008  C15 YDS 2  
YDS C18 C3  C 0 1 N N N N N N -12.660 9.055  48.317 -5.010 1.948  0.272  C18 YDS 3  
YDS C19 C4  C 0 1 N N N N N N -11.482 8.471  42.914 2.635  -1.604 0.121  C19 YDS 4  
YDS C21 C5  C 0 1 N N N N N N -11.590 10.001 43.036 2.621  -3.108 0.030  C21 YDS 5  
YDS C22 C6  C 0 1 N N N N N N -12.283 10.507 41.767 3.874  -3.672 0.703  C22 YDS 6  
YDS C23 C7  C 0 1 N N N N N N -12.398 10.409 44.279 1.376  -3.650 0.734  C23 YDS 7  
YDS C24 C8  C 0 1 N N N N N N -10.159 10.545 43.177 2.600  -3.530 -1.441 C24 YDS 8  
YDS C1  C9  C 0 1 Y N N N N N -11.646 4.185  43.275 2.728  2.615  -0.056 C1  YDS 9  
YDS C2  C10 C 0 1 Y N N N N N -12.265 3.654  44.420 1.499  3.264  0.089  C2  YDS 10 
YDS C3  C11 C 0 1 Y N N N N N -12.904 4.512  45.334 0.328  2.536  0.067  C3  YDS 11 
YDS C4  C12 C 0 1 Y N N N N N -12.906 5.891  45.076 0.366  1.159  -0.098 C4  YDS 12 
YDS C5  C13 C 0 1 Y N N N N N -12.254 6.398  43.938 1.589  0.504  -0.243 C5  YDS 13 
YDS C6  C14 C 0 1 Y N N N N N -11.625 5.543  43.028 2.767  1.228  -0.222 C6  YDS 14 
YDS C7  C15 C 0 1 N N N N N N -11.072 3.306  42.309 3.945  3.370  -0.039 C7  YDS 15 
YDS N8  N1  N 0 1 N N N N N N -10.620 2.575  41.511 4.910  3.969  -0.026 N8  YDS 16 
YDS N9  N2  N 0 1 N N N N N N -12.218 7.778  43.829 1.624  -0.887 -0.409 N9  YDS 17 
YDS O10 O1  O 0 1 N N N N N N -13.558 6.902  45.862 -0.791 0.447  -0.118 O10 YDS 18 
YDS C12 C16 C 0 1 N N N N N N -14.810 7.652  47.860 -3.176 0.232  -0.011 C12 YDS 19 
YDS N13 N3  N 0 1 N N N N N N -16.118 7.733  48.234 -3.099 -1.051 -0.166 N13 YDS 20 
YDS N14 N4  N 0 1 N N N N N N -16.198 8.807  49.076 -4.401 -1.571 -0.156 N14 YDS 21 
YDS N16 N5  N 0 1 N N N N N N -14.064 8.719  48.459 -4.499 0.587  0.095  N16 YDS 22 
YDS O17 O2  O 0 1 N N N N N N -14.760 10.403 49.967 -6.462 -0.593 0.061  O17 YDS 23 
YDS O20 O3  O 0 1 N N N N N N -10.833 7.891  42.072 3.557  -1.038 0.671  O20 YDS 24 
YDS H30 H1  H 0 1 N N N N N N -15.045 5.815  46.785 -1.999 1.700  0.995  H30 YDS 25 
YDS H29 H2  H 0 1 N N N N N N -13.504 5.963  47.695 -2.097 1.909  -0.770 H29 YDS 26 
YDS H32 H3  H 0 1 N N N N N N -12.431 9.942  48.926 -6.099 1.924  0.324  H32 YDS 27 
YDS H34 H4  H 0 1 N N N N N N -12.044 8.209  48.657 -4.612 2.368  1.196  H34 YDS 28 
YDS H33 H5  H 0 1 N N N N N N -12.439 9.268  47.261 -4.700 2.565  -0.571 H33 YDS 29 
YDS H36 H6  H 0 1 N N N N N N -12.381 11.602 41.814 3.889  -3.371 1.751  H36 YDS 30 
YDS H35 H7  H 0 1 N N N N N N -11.684 10.230 40.887 3.864  -4.760 0.637  H35 YDS 31 
YDS H37 H8  H 0 1 N N N N N N -13.282 10.053 41.689 4.761  -3.286 0.202  H37 YDS 32 
YDS H38 H9  H 0 1 N N N N N N -12.456 11.506 44.336 0.483  -3.249 0.254  H38 YDS 33 
YDS H39 H10 H 0 1 N N N N N N -13.413 9.992  44.209 1.365  -4.738 0.668  H39 YDS 34 
YDS H40 H11 H 0 1 N N N N N N -11.903 10.021 45.181 1.391  -3.350 1.781  H40 YDS 35 
YDS H41 H12 H 0 1 N N N N N N -10.190 11.641 43.267 3.487  -3.144 -1.943 H41 YDS 36 
YDS H43 H13 H 0 1 N N N N N N -9.691  10.116 44.075 2.590  -4.618 -1.507 H43 YDS 37 
YDS H42 H14 H 0 1 N N N N N N -9.572  10.267 42.289 1.707  -3.128 -1.921 H42 YDS 38 
YDS H25 H15 H 0 1 N N N N N N -12.250 2.589  44.598 1.467  4.335  0.218  H25 YDS 39 
YDS H26 H16 H 0 1 N N N N N N -13.384 4.117  46.217 -0.621 3.040  0.180  H26 YDS 40 
YDS H27 H17 H 0 1 N N N N N N -11.133 5.937  42.151 3.715  0.723  -0.334 H27 YDS 41 
YDS H28 H18 H 0 1 N N N N N N -12.774 8.307  44.470 0.921  -1.334 -0.905 H28 YDS 42 
YDS H31 H19 H 0 1 N N N N N N -17.049 9.098  49.514 -4.648 -2.504 -0.248 H31 YDS 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YDS C1  C2  DOUB Y N 1  
YDS C1  C6  SING Y N 2  
YDS C1  C7  SING N N 3  
YDS C2  C3  SING Y N 4  
YDS C3  C4  DOUB Y N 5  
YDS C4  C5  SING Y N 6  
YDS C4  O10 SING N N 7  
YDS C5  C6  DOUB Y N 8  
YDS C5  N9  SING N N 9  
YDS C7  N8  TRIP N N 10 
YDS N9  C19 SING N N 11 
YDS O10 C11 SING N N 12 
YDS C11 C12 SING N N 13 
YDS C12 N13 DOUB N N 14 
YDS C12 N16 SING N N 15 
YDS N13 N14 SING N N 16 
YDS N14 C15 SING N N 17 
YDS C15 N16 SING N N 18 
YDS C15 O17 DOUB N N 19 
YDS N16 C18 SING N N 20 
YDS C19 O20 DOUB N N 21 
YDS C19 C21 SING N N 22 
YDS C21 C22 SING N N 23 
YDS C21 C23 SING N N 24 
YDS C21 C24 SING N N 25 
YDS C11 H30 SING N N 26 
YDS C11 H29 SING N N 27 
YDS C18 H32 SING N N 28 
YDS C18 H34 SING N N 29 
YDS C18 H33 SING N N 30 
YDS C22 H36 SING N N 31 
YDS C22 H35 SING N N 32 
YDS C22 H37 SING N N 33 
YDS C23 H38 SING N N 34 
YDS C23 H39 SING N N 35 
YDS C23 H40 SING N N 36 
YDS C24 H41 SING N N 37 
YDS C24 H43 SING N N 38 
YDS C24 H42 SING N N 39 
YDS C2  H25 SING N N 40 
YDS C3  H26 SING N N 41 
YDS C6  H27 SING N N 42 
YDS N9  H28 SING N N 43 
YDS N14 H31 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YDS SMILES           ACDLabs              12.01 "CC(C)(C)C(=O)Nc1cc(C#N)ccc1OCC1=NNC(=O)N1C"                                                                                   
YDS InChI            InChI                1.06  "InChI=1S/C16H19N5O3/c1-16(2,3)14(22)18-11-7-10(8-17)5-6-12(11)24-9-13-19-20-15(23)21(13)4/h5-7H,9H2,1-4H3,(H,18,22)(H,20,23)" 
YDS InChIKey         InChI                1.06  XAIVMWFPGMHHJC-UHFFFAOYSA-N                                                                                                    
YDS SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)NN=C1COc2ccc(cc2NC(=O)C(C)(C)C)C#N"                                                                                   
YDS SMILES           CACTVS               3.385 "CN1C(=O)NN=C1COc2ccc(cc2NC(=O)C(C)(C)C)C#N"                                                                                   
YDS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(=O)Nc1cc(ccc1OCC2=NNC(=O)N2C)C#N"                                                                                   
YDS SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(=O)Nc1cc(ccc1OCC2=NNC(=O)N2C)C#N"                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YDS "SYSTEMATIC NAME" ACDLabs              12.01 "N-{5-cyano-2-[(4-methyl-5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl)methoxy]phenyl}-2,2-dimethylpropanamide"      
YDS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[5-cyano-2-[(4-methyl-5-oxidanylidene-1~{H}-1,2,4-triazol-3-yl)methoxy]phenyl]-2,2-dimethyl-propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YDS "Create component" 2023-06-13 RCSB 
YDS "Initial release"  2024-12-18 RCSB 
# 
