data_3TT
# 
_chem_comp.id                                    3TT 
_chem_comp.name                                  "[[[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H15 N4 O11 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               PRO 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-01-06 
_chem_comp.pdbx_modified_date                    2014-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        468.211 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3TT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VCV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3TT O3G   O3G   O 0 1 N N N -21.328 10.918 -21.053 -4.978 3.131  -1.588 O3G   3TT 1  
3TT PG    PG    P 0 1 N N N -22.626 11.053 -22.010 -4.866 1.857  -0.609 PG    3TT 2  
3TT O1G   O1G   O 0 1 N N N -22.768 9.589  -22.680 -4.981 2.345  0.921  O1G   3TT 3  
3TT O2G   O2G   O 0 1 N N N -22.446 12.097 -23.050 -5.962 0.908  -0.908 O2G   3TT 4  
3TT N3B   N3B   N 0 1 N N N -23.999 11.266 -21.133 -3.384 1.096  -0.845 N3B   3TT 5  
3TT PB    PB    P 0 1 N N N -23.778 11.830 -19.640 -3.227 -0.244 0.161  PB    3TT 6  
3TT O2B   O2B   O 0 1 N N N -22.311 11.374 -19.199 -3.327 0.225  1.698  O2B   3TT 7  
3TT O1B   O1B   O 0 1 N N N -23.852 13.296 -19.493 -4.309 -1.210 -0.132 O1B   3TT 8  
3TT O3A   O3A   O 0 1 N N N -24.837 11.078 -18.698 -1.799 -0.942 -0.095 O3A   3TT 9  
3TT PA    PA    P 0 1 N N N -25.331 9.575  -18.992 -1.056 -2.228 0.527  PA    3TT 10 
3TT O1A   O1A   O 0 1 N N N -24.006 8.671  -19.145 -1.627 -3.565 -0.163 O1A   3TT 11 
3TT O2A   O2A   O 0 1 N N N -26.206 9.476  -20.183 -1.302 -2.282 1.986  O2A   3TT 12 
3TT "O5'" "O5'" O 0 1 N N N -26.066 9.068  -17.649 0.527  -2.117 0.254  "O5'" 3TT 13 
3TT "C5'" "C5'" C 0 1 N N N -25.685 9.608  -16.381 1.474  -3.053 0.773  "C5'" 3TT 14 
3TT "C4'" "C4'" C 0 1 N N R -26.841 9.393  -15.404 2.882  -2.655 0.326  "C4'" 3TT 15 
3TT "O4'" "O4'" O 0 1 N N N -27.917 10.204 -15.891 3.179  -1.307 0.739  "O4'" 3TT 16 
3TT "S3'" "S3'" S 0 1 N N N -26.416 10.127 -13.845 2.983  -2.604 -1.505 "S3'" 3TT 17 
3TT "C2'" "C2'" C 0 1 N N N -27.892 11.087 -13.619 3.516  -0.846 -1.607 "C2'" 3TT 18 
3TT "C1'" "C1'" C 0 1 N N S -28.734 10.677 -14.812 4.072  -0.645 -0.168 "C1'" 3TT 19 
3TT N1    N1    N 0 1 N N N -29.452 11.862 -15.326 4.129  0.785  0.147  N1    3TT 20 
3TT C2    C2    C 0 1 N N N -30.734 12.058 -14.960 4.888  1.605  -0.602 C2    3TT 21 
3TT O2    O2    O 0 1 N N N -31.311 11.218 -14.275 5.522  1.148  -1.538 O2    3TT 22 
3TT N3    N3    N 0 1 N N N -31.423 13.206 -15.368 4.958  2.909  -0.339 N3    3TT 23 
3TT C4    C4    C 0 1 N N N -30.761 14.157 -16.178 4.279  3.433  0.673  C4    3TT 24 
3TT N4    N4    N 0 1 N N N -31.443 15.238 -16.564 4.359  4.781  0.935  N4    3TT 25 
3TT C5    C5    C 0 1 N N N -29.429 13.967 -16.540 3.474  2.601  1.478  C5    3TT 26 
3TT C6    C6    C 0 1 N N N -28.772 12.815 -16.099 3.409  1.278  1.194  C6    3TT 27 
3TT H1    H1    H 0 1 N N N -20.665 11.541 -21.328 -5.808 3.618  -1.506 H1    3TT 28 
3TT H2    H2    H 0 1 N N N -22.710 9.666  -23.625 -4.294 2.970  1.187  H2    3TT 29 
3TT H3    H3    H 0 1 N N N -24.583 11.912 -21.625 -3.260 0.838  -1.813 H3    3TT 30 
3TT H4    H4    H 0 1 N N N -21.807 12.136 -18.940 -2.647 0.861  1.961  H4    3TT 31 
3TT H5    H5    H 0 1 N N N -24.020 8.227  -19.985 -1.500 -3.598 -1.122 H5    3TT 32 
3TT H6    H6    H 0 1 N N N -24.785 9.094  -16.012 1.425  -3.053 1.862  H6    3TT 33 
3TT H7    H7    H 0 1 N N N -25.477 10.684 -16.481 1.242  -4.050 0.399  H7    3TT 34 
3TT H8    H8    H 0 1 N N N -27.093 8.332  -15.259 3.619  -3.349 0.729  H8    3TT 35 
3TT H9    H9    H 0 1 N N N -27.672 12.165 -13.639 4.297  -0.713 -2.355 H9    3TT 36 
3TT H10   H10   H 0 1 N N N -28.392 10.832 -12.673 2.670  -0.187 -1.801 H10   3TT 37 
3TT H11   H11   H 0 1 N N N -29.455 9.905  -14.504 5.067  -1.081 -0.091 H11   3TT 38 
3TT H12   H12   H 0 1 N N N -32.394 15.357 -16.280 4.913  5.351  0.380  H12   3TT 39 
3TT H13   H13   H 0 1 N N N -31.002 15.929 -17.137 3.861  5.161  1.676  H13   3TT 40 
3TT H14   H14   H 0 1 N N N -28.915 14.695 -17.149 2.916  3.012  2.305  H14   3TT 41 
3TT H15   H15   H 0 1 N N N -27.735 12.657 -16.355 2.799  0.620  1.795  H15   3TT 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3TT O2G   PG    DOUB N N 1  
3TT O1G   PG    SING N N 2  
3TT PG    N3B   SING N N 3  
3TT PG    O3G   SING N N 4  
3TT N3B   PB    SING N N 5  
3TT O2A   PA    DOUB N N 6  
3TT PB    O1B   DOUB N N 7  
3TT PB    O2B   SING N N 8  
3TT PB    O3A   SING N N 9  
3TT O1A   PA    SING N N 10 
3TT PA    O3A   SING N N 11 
3TT PA    "O5'" SING N N 12 
3TT "O5'" "C5'" SING N N 13 
3TT N4    C4    SING N N 14 
3TT C5    C4    SING N N 15 
3TT C5    C6    DOUB N N 16 
3TT "C5'" "C4'" SING N N 17 
3TT C4    N3    DOUB N N 18 
3TT C6    N1    SING N N 19 
3TT "O4'" "C4'" SING N N 20 
3TT "O4'" "C1'" SING N N 21 
3TT "C4'" "S3'" SING N N 22 
3TT N3    C2    SING N N 23 
3TT N1    C2    SING N N 24 
3TT N1    "C1'" SING N N 25 
3TT C2    O2    DOUB N N 26 
3TT "C1'" "C2'" SING N N 27 
3TT "S3'" "C2'" SING N N 28 
3TT O3G   H1    SING N N 29 
3TT O1G   H2    SING N N 30 
3TT N3B   H3    SING N N 31 
3TT O2B   H4    SING N N 32 
3TT O1A   H5    SING N N 33 
3TT "C5'" H6    SING N N 34 
3TT "C5'" H7    SING N N 35 
3TT "C4'" H8    SING N N 36 
3TT "C2'" H9    SING N N 37 
3TT "C2'" H10   SING N N 38 
3TT "C1'" H11   SING N N 39 
3TT N4    H12   SING N N 40 
3TT N4    H13   SING N N 41 
3TT C5    H14   SING N N 42 
3TT C6    H15   SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3TT InChI            InChI                1.03  "InChI=1S/C8H15N4O11P3S/c9-5-1-2-12(8(13)10-5)6-4-27-7(22-6)3-21-26(19,20)23-25(17,18)11-24(14,15)16/h1-2,6-7H,3-4H2,(H,19,20)(H2,9,10,13)(H4,11,14,15,16,17,18)/t6-,7+/m0/s1" 
3TT InChIKey         InChI                1.03  KGYPGPIERPVYLF-NKWVEPMBSA-N                                                                                                                                                    
3TT SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1)[C@@H]2CS[C@H](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2"                                                                                                       
3TT SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1)[CH]2CS[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2"                                                                                                          
3TT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H](O[C@H](S1)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)N2C=CC(=NC2=O)N"                                                                                                              
3TT SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(OC(S1)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)N2C=CC(=NC2=O)N"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3TT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3TT "Create component" 2012-01-06 RCSB 
3TT "Initial release"  2014-08-27 RCSB 
# 
