data_5KT
# 
_chem_comp.id                                    5KT 
_chem_comp.name                                  "3-deoxy-3-[4-(thiophen-3-yl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-1-thio-3-[4-(thiophen-3-yl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranoside" 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C24 H28 N6 O8 S3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-14 
_chem_comp.pdbx_modified_date                    2016-08-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        624.710 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5KT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5E88 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5KT C6    C1  C 0 1 N N N 20.532 -5.614  -0.151 -2.687  3.665  2.370  C6    5KT 1  
5KT C5    C2  C 0 1 N N R 19.956 -6.775  -0.956 -2.636  2.918  1.036  C5    5KT 2  
5KT S1    S1  S 0 1 N N N 21.089 -10.503 -0.702 0.002   0.107  -0.003 S1    5KT 3  
5KT C2    C3  C 0 1 N N R 18.681 -9.373  -1.174 -2.683  0.429  -0.425 C2    5KT 4  
5KT N3    N1  N 0 1 Y N N 14.329 -8.071  -1.961 -7.050  0.082  -1.324 N3    5KT 5  
5KT C4    C4  C 0 1 N N R 18.460 -6.931  -0.742 -3.959  2.178  0.815  C4    5KT 6  
5KT "C5'" C5  C 0 1 N N R 24.583 -10.520 -2.494 2.639   2.923  -1.028 "C5'" 5KT 7  
5KT "C4'" C6  C 0 1 N N R 25.536 -10.735 -1.319 3.961   2.183  -0.811 "C4'" 5KT 8  
5KT "N3'" N2  N 0 1 Y N N 26.853 -11.013 2.822  7.056   0.079  1.314  "N3'" 5KT 9  
5KT "C2'" C7  C 0 1 N N R 23.629 -10.254 0.211  2.686   0.428  0.421  "C2'" 5KT 10 
5KT "N1'" N3  N 0 1 Y N N 25.960 -9.959  1.044  5.114   0.612  0.672  "N1'" 5KT 11 
5KT "C6'" C8  C 0 1 N N N 24.997 -11.347 -3.709 2.689   3.677  -2.358 "C6'" 5KT 12 
5KT O6    O1  O 0 1 N N N 21.919 -5.476  -0.474 -1.501  4.448  2.522  O6    5KT 13 
5KT O5    O2  O 0 1 N N N 20.609 -7.984  -0.563 -1.563  1.975  1.058  O5    5KT 14 
5KT O4    O3  O 0 1 N N N 18.188 -7.118  0.650  -4.193  1.283  1.904  O4    5KT 15 
5KT C3    C9  C 0 1 N N S 17.913 -8.112  -1.537 -3.878  1.384  -0.493 C3    5KT 16 
5KT N1    N4  N 0 1 Y N N 16.460 -8.231  -1.269 -5.111  0.614  -0.675 N1    5KT 17 
5KT N2    N5  N 0 1 Y N N 15.660 -7.936  -2.385 -6.133  0.982  -1.365 N2    5KT 18 
5KT CB    C10 C 0 1 Y N N 14.423 -8.416  -0.662 -6.620  -0.943 -0.568 CB    5KT 19 
5KT CD    C11 C 0 1 Y N N 13.205 -8.653  0.168  -7.360  -2.193 -0.255 CD    5KT 20 
5KT CF    C12 C 0 1 Y N N 11.951 -8.712  -0.418 -8.596  -2.498 -0.820 CF    5KT 21 
5KT CE    C13 C 0 1 Y N N 13.259 -8.806  1.536  -6.888  -3.125 0.591  CE    5KT 22 
5KT S2    S2  S 0 1 Y N N 11.667 -9.065  2.197  -8.037  -4.451 0.706  S2    5KT 23 
5KT CG    C14 C 0 1 Y N N 11.020 -8.934  0.581  -9.120  -3.658 -0.430 CG    5KT 24 
5KT CA    C15 C 0 1 Y N N 15.719 -8.522  -0.189 -5.368  -0.605 -0.145 CA    5KT 25 
5KT O2    O4  O 0 1 N N N 18.264 -10.434 -2.040 -2.555  -0.266 -1.667 O2    5KT 26 
5KT C1    C16 C 0 1 N N S 20.181 -9.122  -1.317 -1.410  1.236  -0.156 C1    5KT 27 
5KT "C1'" C17 C 0 1 N N S 22.758 -10.054 -1.030 1.413   1.236  0.156  "C1'" 5KT 28 
5KT "O5'" O5  O 0 1 N N N 23.245 -10.861 -2.113 1.566   1.980  -1.055 "O5'" 5KT 29 
5KT "O6'" O6  O 0 1 N N N 24.196 -10.972 -4.834 1.503   4.459  -2.508 "O6'" 5KT 30 
5KT "O2'" O7  O 0 1 N N N 23.150 -9.468  1.314  2.558   -0.272 1.660  "O2'" 5KT 31 
5KT "C3'" C18 C 0 1 N N S 25.065 -9.874  -0.145 3.881   1.383  0.493  "C3'" 5KT 32 
5KT "O4'" O8  O 0 1 N N N 25.576 -12.123 -0.962 4.196   1.293  -1.903 "O4'" 5KT 33 
5KT "N2'" N6  N 0 1 Y N N 25.959 -11.174 1.746  6.139   0.980  1.357  "N2'" 5KT 34 
5KT "CB'" C19 C 0 1 Y N N 27.309 -9.753  2.684  6.621   -0.947 0.562  "CB'" 5KT 35 
5KT "CA'" C20 C 0 1 Y N N 26.778 -9.068  1.617  5.368   -0.609 0.143  "CA'" 5KT 36 
5KT "CD'" C21 C 0 1 Y N N 28.272 -9.147  3.654  7.359   -2.198 0.248  "CD'" 5KT 37 
5KT "CF'" C22 C 0 1 Y N N 28.447 -7.774  3.708  8.643   -2.455 0.724  "CF'" 5KT 38 
5KT "CE'" C23 C 0 1 Y N N 28.963 -9.937  4.554  6.840   -3.176 -0.514 "CE'" 5KT 39 
5KT "S2'" S3  S 0 1 Y N N 29.951 -8.884  5.536  8.002   -4.488 -0.660 "S2'" 5KT 40 
5KT "CG'" C24 C 0 1 Y N N 29.363 -7.464  4.698  9.156   -3.624 0.347  "CG'" 5KT 41 
5KT H1    H1  H 0 1 N N N 19.999 -4.686  -0.406 -3.558  4.319  2.387  H1    5KT 42 
5KT H2    H2  H 0 1 N N N 20.421 -5.818  0.924  -2.755  2.947  3.187  H2    5KT 43 
5KT H3    H3  H 0 1 N N N 20.139 -6.583  -2.024 -2.478  3.630  0.226  H3    5KT 44 
5KT H4    H4  H 0 1 N N N 18.464 -9.633  -0.127 -2.836  -0.289 0.381  H4    5KT 45 
5KT H5    H5  H 0 1 N N N 17.962 -6.016  -1.095 -4.774  2.900  0.755  H5    5KT 46 
5KT H6    H6  H 0 1 N N N 24.622 -9.457  -2.775 2.481   3.631  -0.214 H6    5KT 47 
5KT H7    H7  H 0 1 N N N 26.540 -10.398 -1.618 4.776   2.904  -0.747 H7    5KT 48 
5KT H8    H8  H 0 1 N N N 23.609 -11.320 0.481  2.838   -0.287 -0.388 H8    5KT 49 
5KT H9    H9  H 0 1 N N N 24.850 -12.416 -3.493 3.560   4.332  -2.372 H9    5KT 50 
5KT H10   H10 H 0 1 N N N 26.057 -11.162 -3.935 2.759   2.962  -3.178 H10   5KT 51 
5KT H11   H11 H 0 1 N N N 22.290 -4.755  0.022  -1.464  4.950  3.348  H11   5KT 52 
5KT H12   H12 H 0 1 N N N 18.530 -6.381  1.142  -4.250  1.718  2.765  H12   5KT 53 
5KT H13   H13 H 0 1 N N N 18.063 -7.909  -2.608 -3.750  2.070  -1.330 H13   5KT 54 
5KT H14   H14 H 0 1 N N N 11.737 -8.604  -1.471 -9.093  -1.843 -1.520 H14   5KT 55 
5KT H15   H15 H 0 1 N N N 14.166 -8.770  2.121  -5.949  -3.067 1.120  H15   5KT 56 
5KT H16   H16 H 0 1 N N N 9.963  -9.020  0.375  -10.067 -4.054 -0.763 H16   5KT 57 
5KT H17   H17 H 0 1 N N N 16.053 -8.777  0.806  -4.714  -1.191 0.483  H17   5KT 58 
5KT H18   H18 H 0 1 N N N 18.739 -11.227 -1.821 -1.815  -0.887 -1.695 H18   5KT 59 
5KT H19   H19 H 0 1 N N N 20.440 -9.014  -2.381 -1.235  1.926  -0.982 H19   5KT 60 
5KT H20   H20 H 0 1 N N N 22.753 -8.990  -1.307 1.238   1.922  0.985  H20   5KT 61 
5KT H21   H21 H 0 1 N N N 24.452 -11.486 -5.591 1.466   4.965  -3.331 H21   5KT 62 
5KT H22   H22 H 0 1 N N N 23.707 -9.610  2.070  1.817   -0.893 1.686  H22   5KT 63 
5KT H23   H23 H 0 1 N N N 25.055 -8.828  -0.487 3.752   2.066  1.333  H23   5KT 64 
5KT H24   H24 H 0 1 N N N 26.171 -12.246 -0.231 4.253   1.732  -2.763 H24   5KT 65 
5KT H25   H25 H 0 1 N N N 26.975 -8.051  1.313  4.711   -1.195 -0.482 H25   5KT 66 
5KT H26   H26 H 0 1 N N N 27.946 -7.056  3.075  9.180   -1.759 1.351  H26   5KT 67 
5KT H27   H27 H 0 1 N N N 28.903 -11.012 4.635  5.860   -3.159 -0.967 H27   5KT 68 
5KT H28   H28 H 0 1 N N N 29.680 -6.458  4.928  10.136  -3.988 0.620  H28   5KT 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5KT "O6'" "C6'" SING N N 1  
5KT "C6'" "C5'" SING N N 2  
5KT "C5'" "O5'" SING N N 3  
5KT "C5'" "C4'" SING N N 4  
5KT N2    N3    DOUB Y N 5  
5KT N2    N1    SING Y N 6  
5KT "O5'" "C1'" SING N N 7  
5KT O2    C2    SING N N 8  
5KT N3    CB    SING Y N 9  
5KT C3    N1    SING N N 10 
5KT C3    C2    SING N N 11 
5KT C3    C4    SING N N 12 
5KT "C4'" "O4'" SING N N 13 
5KT "C4'" "C3'" SING N N 14 
5KT C1    C2    SING N N 15 
5KT C1    S1    SING N N 16 
5KT C1    O5    SING N N 17 
5KT N1    CA    SING Y N 18 
5KT "C1'" S1    SING N N 19 
5KT "C1'" "C2'" SING N N 20 
5KT C5    C4    SING N N 21 
5KT C5    O5    SING N N 22 
5KT C5    C6    SING N N 23 
5KT C4    O4    SING N N 24 
5KT CB    CA    DOUB Y N 25 
5KT CB    CD    SING N N 26 
5KT O6    C6    SING N N 27 
5KT CF    CD    SING Y N 28 
5KT CF    CG    DOUB Y N 29 
5KT "C3'" "C2'" SING N N 30 
5KT "C3'" "N1'" SING N N 31 
5KT CD    CE    DOUB Y N 32 
5KT "C2'" "O2'" SING N N 33 
5KT CG    S2    SING Y N 34 
5KT "N1'" "CA'" SING Y N 35 
5KT "N1'" "N2'" SING Y N 36 
5KT CE    S2    SING Y N 37 
5KT "CA'" "CB'" DOUB Y N 38 
5KT "N2'" "N3'" DOUB Y N 39 
5KT "CB'" "N3'" SING Y N 40 
5KT "CB'" "CD'" SING N N 41 
5KT "CD'" "CF'" SING Y N 42 
5KT "CD'" "CE'" DOUB Y N 43 
5KT "CF'" "CG'" DOUB Y N 44 
5KT "CE'" "S2'" SING Y N 45 
5KT "CG'" "S2'" SING Y N 46 
5KT C6    H1    SING N N 47 
5KT C6    H2    SING N N 48 
5KT C5    H3    SING N N 49 
5KT C2    H4    SING N N 50 
5KT C4    H5    SING N N 51 
5KT "C5'" H6    SING N N 52 
5KT "C4'" H7    SING N N 53 
5KT "C2'" H8    SING N N 54 
5KT "C6'" H9    SING N N 55 
5KT "C6'" H10   SING N N 56 
5KT O6    H11   SING N N 57 
5KT O4    H12   SING N N 58 
5KT C3    H13   SING N N 59 
5KT CF    H14   SING N N 60 
5KT CE    H15   SING N N 61 
5KT CG    H16   SING N N 62 
5KT CA    H17   SING N N 63 
5KT O2    H18   SING N N 64 
5KT C1    H19   SING N N 65 
5KT "C1'" H20   SING N N 66 
5KT "O6'" H21   SING N N 67 
5KT "O2'" H22   SING N N 68 
5KT "C3'" H23   SING N N 69 
5KT "O4'" H24   SING N N 70 
5KT "CA'" H25   SING N N 71 
5KT "CF'" H26   SING N N 72 
5KT "CE'" H27   SING N N 73 
5KT "CG'" H28   SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5KT SMILES           ACDLabs              12.01 "C(C4C(O)C(C(O)C(SC1C(O)C(C(C(O1)CO)O)n2cc(nn2)c3ccsc3)O4)n5cc(nn5)c6cscc6)O" 
5KT InChI            InChI                1.03  
"InChI=1S/C24H28N6O8S3/c31-7-15-19(33)17(29-5-13(25-27-29)11-1-3-39-9-11)21(35)23(37-15)41-24-22(36)18(20(34)16(8-32)38-24)30-6-14(26-28-30)12-2-4-40-10-12/h1-6,9-10,15-24,31-36H,7-8H2/t15-,16-,17+,18+,19+,20+,21-,22-,23+,24+/m1/s1" 
5KT InChIKey         InChI                1.03  OYKAQKLJBYMZSV-VLLPDFJVSA-N 
5KT SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@@H]([C@H]2O)n3cc(nn3)c4cscc4)[C@H](O)[C@H]([C@H]1O)n5cc(nn5)c6cscc6" 
5KT SMILES           CACTVS               3.385 "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH]([CH]2O)n3cc(nn3)c4cscc4)[CH](O)[CH]([CH]1O)n5cc(nn5)c6cscc6" 
5KT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cscc1c2cn(nn2)[C@H]3[C@H]([C@H](O[C@H]([C@@H]3O)S[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)n5cc(nn5)c6ccsc6)O)CO)O" 
5KT SMILES           "OpenEye OEToolkits" 1.9.2 "c1cscc1c2cn(nn2)C3C(C(OC(C3O)SC4C(C(C(C(O4)CO)O)n5cc(nn5)c6ccsc6)O)CO)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5KT "SYSTEMATIC NAME" ACDLabs              12.01 "3-deoxy-3-[4-(thiophen-3-yl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-1-thio-3-[4-(thiophen-3-yl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranoside"                                          
5KT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[(2S,3R,4S,5R,6R)-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-(4-thiophen-3-yl-1,2,3-triazol-1-yl)oxan-2-yl]sulfanyl-4-(4-thiophen-3-yl-1,2,3-triazol-1-yl)oxane-3,5-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5KT "Create component" 2015-10-14 RCSB 
5KT "Initial release"  2016-08-23 RCSB 
# 
