data_BYT
#

_chem_comp.id                                   BYT
_chem_comp.name                                 Biocytin
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H28 N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N~6~-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}-L-lysine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-08-01
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       372.483
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BYT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4LOD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BYT  N01  N01  N  0  1  N  N  N  -49.910  -5.777  31.022   -8.402   1.555   1.117  N01  BYT   1  
BYT  C02  C02  C  0  1  N  N  S  -49.870  -4.639  30.151   -8.439   0.585   0.014  C02  BYT   2  
BYT  C03  C03  C  0  1  N  N  N  -48.444  -4.061  30.220   -7.208  -0.321   0.090  C03  BYT   3  
BYT  C04  C04  C  0  1  N  N  N  -48.140  -3.272  31.503   -5.947   0.513  -0.147  C04  BYT   4  
BYT  C05  C05  C  0  1  N  N  N  -46.695  -2.719  31.491   -4.716  -0.393  -0.071  C05  BYT   5  
BYT  C06  C06  C  0  1  N  N  N  -46.390  -1.971  32.797   -3.454   0.440  -0.307  C06  BYT   6  
BYT  N07  N07  N  0  1  N  N  N  -47.488  -1.048  33.128   -2.276  -0.427  -0.235  N07  BYT   7  
BYT  C08  C08  C  0  1  N  N  N  -47.484   0.304  32.600   -1.045   0.093  -0.414  C08  BYT   8  
BYT  O09  O09  O  0  1  N  N  N  -46.595   0.754  31.883   -0.913   1.278  -0.633  O09  BYT   9  
BYT  C10  C10  C  0  1  N  N  N  -48.650   1.214  32.988    0.167  -0.799  -0.339  C10  BYT  10  
BYT  C11  C11  C  0  1  N  N  N  -48.136   2.399  33.826    1.429   0.034  -0.576  C11  BYT  11  
BYT  C12  C12  C  0  1  N  N  N  -47.265   1.955  35.036    2.660  -0.872  -0.500  C12  BYT  12  
BYT  C13  C13  C  0  1  N  N  N  -47.988   0.991  36.020    3.921  -0.039  -0.736  C13  BYT  13  
BYT  C14  C14  C  0  1  N  N  S  -47.044   0.643  37.194    5.152  -0.944  -0.661  C14  BYT  14  
BYT  S15  S15  S  0  1  N  N  N  -45.920  -0.578  36.885    5.470  -1.470   1.072  S15  BYT  15  
BYT  C16  C16  C  0  1  N  N  N  -45.476  -0.871  38.480    7.278  -1.703   0.834  C16  BYT  16  
BYT  C17  C17  C  0  1  N  N  R  -46.730  -0.524  39.378    7.634  -0.589  -0.171  C17  BYT  17  
BYT  N18  N18  N  0  1  N  N  N  -47.084  -1.955  39.468    8.003   0.629   0.567  N18  BYT  18  
BYT  C19  C19  C  0  1  N  N  N  -48.237  -2.133  38.726    7.168   1.618   0.224  C19  BYT  19  
BYT  O20  O20  O  0  1  N  N  N  -48.782  -3.208  38.661    7.244   2.741   0.684  O20  BYT  20  
BYT  N21  N21  N  0  1  N  N  N  -48.741  -1.010  38.050    6.240   1.258  -0.673  N21  BYT  21  
BYT  C22  C22  C  0  1  N  N  S  -47.873   0.094  38.376    6.430  -0.160  -1.018  C22  BYT  22  
BYT  C23  C23  C  0  1  N  N  N  -50.174  -5.157  28.729   -9.686  -0.253   0.124  C23  BYT  23  
BYT  O24  O24  O  0  1  N  N  N  -50.706  -4.387  27.851  -10.271  -0.331   1.179  O24  BYT  24  
BYT  O25  O25  O  0  1  N  N  N  -49.855  -6.353  28.474  -10.148  -0.913  -0.949  O25  BYT  25  
BYT  H1   H1   H  0  1  N  N  N  -49.718  -5.487  31.959   -9.170   2.206   1.053  H1   BYT  26  
BYT  H2   H2   H  0  1  N  N  N  -50.817  -6.195  30.982   -8.399   1.086   2.011  H2   BYT  27  
BYT  H4   H4   H  0  1  N  N  N  -50.605  -3.875  30.442   -8.441   1.117  -0.937  H4   BYT  28  
BYT  H5   H5   H  0  1  N  N  N  -47.731  -4.896  30.152   -7.158  -0.785   1.075  H5   BYT  29  
BYT  H6   H6   H  0  1  N  N  N  -48.304  -3.388  29.361   -7.280  -1.095  -0.674  H6   BYT  30  
BYT  H7   H7   H  0  1  N  N  N  -48.845  -2.432  31.583   -5.997   0.976  -1.132  H7   BYT  31  
BYT  H8   H8   H  0  1  N  N  N  -48.262  -3.937  32.371   -5.875   1.287   0.617  H8   BYT  32  
BYT  H9   H9   H  0  1  N  N  N  -45.989  -3.555  31.380   -4.666  -0.857   0.914  H9   BYT  33  
BYT  H10  H10  H  0  1  N  N  N  -46.580  -2.027  30.643   -4.787  -1.168  -0.835  H10  BYT  34  
BYT  H11  H11  H  0  1  N  N  N  -46.271  -2.699  33.613   -3.504   0.904  -1.293  H11  BYT  35  
BYT  H12  H12  H  0  1  N  N  N  -45.459  -1.398  32.678   -3.383   1.215   0.456  H12  BYT  36  
BYT  H13  H13  H  0  1  N  N  N  -48.237  -1.353  33.717   -2.381  -1.375  -0.059  H13  BYT  37  
BYT  H14  H14  H  0  1  N  N  N  -49.134   1.595  32.077    0.218  -1.263   0.646  H14  BYT  38  
BYT  H15  H15  H  0  1  N  N  N  -49.380   0.640  33.578    0.096  -1.574  -1.103  H15  BYT  39  
BYT  H16  H16  H  0  1  N  N  N  -47.530   3.050  33.178    1.379   0.498  -1.561  H16  BYT  40  
BYT  H17  H17  H  0  1  N  N  N  -49.002   2.962  34.205    1.500   0.809   0.188  H17  BYT  41  
BYT  H18  H18  H  0  1  N  N  N  -46.370   1.446  34.649    2.710  -1.336   0.485  H18  BYT  42  
BYT  H19  H19  H  0  1  N  N  N  -46.963   2.854  35.593    2.588  -1.647  -1.263  H19  BYT  43  
BYT  H20  H20  H  0  1  N  N  N  -48.894   1.478  36.411    3.871   0.425  -1.721  H20  BYT  44  
BYT  H21  H21  H  0  1  N  N  N  -48.268   0.069  35.490    3.993   0.736   0.027  H21  BYT  45  
BYT  H22  H22  H  0  1  N  N  N  -46.494   1.542  37.509    5.034  -1.809  -1.314  H22  BYT  46  
BYT  H23  H23  H  0  1  N  N  N  -45.200  -1.928  38.608    7.813  -1.562   1.773  H23  BYT  47  
BYT  H24  H24  H  0  1  N  N  N  -44.624  -0.234  38.758    7.489  -2.686   0.412  H24  BYT  48  
BYT  H25  H25  H  0  1  N  N  N  -46.543   0.041  40.303    8.458  -0.907  -0.810  H25  BYT  49  
BYT  H26  H26  H  0  1  N  N  N  -46.585  -2.661  39.970    8.734   0.703   1.201  H26  BYT  50  
BYT  H27  H27  H  0  1  N  N  N  -49.546  -0.982  37.457    5.553   1.839  -1.037  H27  BYT  51  
BYT  H28  H28  H  0  1  N  N  N  -48.408   0.908  38.888    6.653  -0.264  -2.079  H28  BYT  52  
BYT  H29  H29  H  0  1  N  N  N  -50.071  -6.553  27.571  -10.952  -1.438  -0.830  H29  BYT  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BYT  O24  C23  DOUB  N  N   1  
BYT  O25  C23  SING  N  N   2  
BYT  C23  C02  SING  N  N   3  
BYT  C02  C03  SING  N  N   4  
BYT  C02  N01  SING  N  N   5  
BYT  C03  C04  SING  N  N   6  
BYT  C05  C04  SING  N  N   7  
BYT  C05  C06  SING  N  N   8  
BYT  O09  C08  DOUB  N  N   9  
BYT  C08  C10  SING  N  N  10  
BYT  C08  N07  SING  N  N  11  
BYT  C06  N07  SING  N  N  12  
BYT  C10  C11  SING  N  N  13  
BYT  C11  C12  SING  N  N  14  
BYT  C12  C13  SING  N  N  15  
BYT  C13  C14  SING  N  N  16  
BYT  S15  C14  SING  N  N  17  
BYT  S15  C16  SING  N  N  18  
BYT  C14  C22  SING  N  N  19  
BYT  N21  C22  SING  N  N  20  
BYT  N21  C19  SING  N  N  21  
BYT  C22  C17  SING  N  N  22  
BYT  C16  C17  SING  N  N  23  
BYT  O20  C19  DOUB  N  N  24  
BYT  C19  N18  SING  N  N  25  
BYT  C17  N18  SING  N  N  26  
BYT  N01  H1   SING  N  N  27  
BYT  N01  H2   SING  N  N  28  
BYT  C02  H4   SING  N  N  29  
BYT  C03  H5   SING  N  N  30  
BYT  C03  H6   SING  N  N  31  
BYT  C04  H7   SING  N  N  32  
BYT  C04  H8   SING  N  N  33  
BYT  C05  H9   SING  N  N  34  
BYT  C05  H10  SING  N  N  35  
BYT  C06  H11  SING  N  N  36  
BYT  C06  H12  SING  N  N  37  
BYT  N07  H13  SING  N  N  38  
BYT  C10  H14  SING  N  N  39  
BYT  C10  H15  SING  N  N  40  
BYT  C11  H16  SING  N  N  41  
BYT  C11  H17  SING  N  N  42  
BYT  C12  H18  SING  N  N  43  
BYT  C12  H19  SING  N  N  44  
BYT  C13  H20  SING  N  N  45  
BYT  C13  H21  SING  N  N  46  
BYT  C14  H22  SING  N  N  47  
BYT  C16  H23  SING  N  N  48  
BYT  C16  H24  SING  N  N  49  
BYT  C17  H25  SING  N  N  50  
BYT  N18  H26  SING  N  N  51  
BYT  N21  H27  SING  N  N  52  
BYT  C22  H28  SING  N  N  53  
BYT  O25  H29  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BYT  SMILES            ACDLabs               12.01  "O=C1NC2C(SCC2N1)CCCCC(=O)NCCCCC(C(=O)O)N"  
BYT  InChI             InChI                 1.03   "InChI=1S/C16H28N4O4S/c17-10(15(22)23)5-3-4-8-18-13(21)7-2-1-6-12-14-11(9-25-12)19-16(24)20-14/h10-12,14H,1-9,17H2,(H,18,21)(H,22,23)(H2,19,20,24)/t10-,11-,12-,14-/m0/s1"  
BYT  InChIKey          InChI                 1.03   BAQMYDQNMFBZNA-MNXVOIDGSA-N  
BYT  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCCCNC(=O)CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)C(O)=O"  
BYT  SMILES            CACTVS                3.385  "N[CH](CCCCNC(=O)CCCC[CH]1SC[CH]2NC(=O)N[CH]12)C(O)=O"  
BYT  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H]2[C@@H]([C@@H](S1)CCCCC(=O)NCCCC[C@@H](C(=O)O)N)NC(=O)N2"  
BYT  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C2C(C(S1)CCCCC(=O)NCCCCC(C(=O)O)N)NC(=O)N2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BYT  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~6~-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}-L-lysine"  
BYT  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S)-6-[5-[(3aS,4S,6aR)-2-oxidanylidene-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]-2-azanyl-hexanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BYT  "Create component"  2013-08-01  RCSB  
BYT  "Initial release"   2014-09-10  RCSB  
BYT  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     BYT
_pdbx_chem_comp_synonyms.name        "N~6~-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}-L-lysine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
