data_JLT
#

_chem_comp.id                                   JLT
_chem_comp.name                                 "3,7-anhydro-1,2,8-trideoxy-1,8-diphosphono-D-glycero-D-gulo-octitol"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H18 O10 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "[(2~{S},3~{S},4~{R},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-(2-phosphonoethyl)oxan-2-yl]methylphosphonic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-11
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       336.170
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JLT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6QZG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     JLT
_pdbx_chem_comp_synonyms.name        "[(2~{S},3~{S},4~{R},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-(2-phosphonoethyl)oxan-2-yl]methylphosphonic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JLT  C4   C4   C  0  1  N  N  R  7.590  -1.285   8.607  -0.359  -2.579   0.147  C4   JLT   1  
JLT  C5   C5   C  0  1  N  N  S  6.885  -0.154   7.835   0.174  -1.217  -0.304  C5   JLT   2  
JLT  C7   C7   C  0  1  N  N  N  3.929   0.588  10.247  -2.708   0.961   0.622  C7   JLT   3  
JLT  C8   C8   C  0  1  N  N  N  7.968   0.740   7.154   1.636  -1.074   0.124  C8   JLT   4  
JLT  O2   O2   O  0  1  N  N  N  7.135  -3.419   9.817  -2.364  -3.929   0.251  O2   JLT   5  
JLT  C9   C9   C  0  1  N  N  N  7.738   2.257   7.163   2.205   0.232  -0.434  C9   JLT   6  
JLT  O1   O1   O  0  1  N  N  N  8.434  -2.000   7.696   0.378  -3.619  -0.498  O1   JLT   7  
JLT  C1   C1   C  0  1  N  N  S  4.957  -0.339   9.499  -1.986  -0.205  -0.056  C1   JLT   8  
JLT  C2   C2   C  0  1  N  N  S  5.767  -1.427  10.303  -2.606  -1.527   0.405  C2   JLT   9  
JLT  C3   C3   C  0  1  N  N  R  6.559  -2.227   9.257  -1.839  -2.690  -0.231  C3   JLT  10  
JLT  O3   O3   O  0  1  N  N  N  5.003  -2.360  11.114  -3.976  -1.579  -0.000  O3   JLT  11  
JLT  O6   O6   O  0  1  N  N  N  5.887   0.494   8.697  -0.602  -0.180   0.299  O6   JLT  12  
JLT  P10  P10  P  0  1  N  N  N  6.976   2.936   5.637   3.947   0.402   0.075  P10  JLT  13  
JLT  P11  P11  P  0  1  N  N  N  3.031   0.143  11.827  -2.071   2.537  -0.038  P11  JLT  14  
JLT  O12  O12  O  0  1  N  N  N  6.805   4.449   5.812   4.821  -0.768  -0.603  O12  JLT  15  
JLT  O14  O14  O  0  1  N  N  N  5.604   2.273   5.445   4.508   1.835  -0.399  O14  JLT  16  
JLT  O15  O15  O  0  1  N  N  N  7.817   2.629   4.388   4.043   0.298   1.548  O15  JLT  17  
JLT  O16  O16  O  0  1  N  N  N  3.673   0.843  13.048  -2.445   2.655  -1.599  O16  JLT  18  
JLT  O17  O17  O  0  1  N  N  N  2.908  -1.359  12.117  -2.735   3.763   0.767  O17  JLT  19  
JLT  O18  O18  O  0  1  N  N  N  1.630   0.671  11.568  -0.601   2.580   0.123  O18  JLT  20  
JLT  H1   H1   H  0  1  N  N  N  8.199  -0.834   9.404  -0.251  -2.673   1.228  H1   JLT  21  
JLT  H2   H2   H  0  1  N  N  N  6.335  -0.639   7.015   0.103  -1.140  -1.389  H2   JLT  22  
JLT  H3   H3   H  0  1  N  N  N  4.480   1.513  10.474  -3.778   0.890   0.424  H3   JLT  23  
JLT  H4   H4   H  0  1  N  N  N  3.139   0.802   9.512  -2.534   0.920   1.697  H4   JLT  24  
JLT  H5   H5   H  0  1  N  N  N  8.044   0.424   6.103   1.697  -1.062   1.212  H5   JLT  25  
JLT  H6   H6   H  0  1  N  N  N  8.923   0.548   7.665   2.211  -1.916  -0.263  H6   JLT  26  
JLT  H7   H7   H  0  1  N  N  N  6.449  -3.953  10.200  -3.300  -4.066   0.047  H7   JLT  27  
JLT  H8   H8   H  0  1  N  N  N  8.711   2.749   7.306   2.144   0.219  -1.522  H8   JLT  28  
JLT  H9   H9   H  0  1  N  N  N  7.078   2.497   8.010   1.630   1.073  -0.048  H9   JLT  29  
JLT  H10  H10  H  0  1  N  N  N  8.877  -2.702   8.158   0.089  -4.511  -0.261  H10  JLT  30  
JLT  H11  H11  H  0  1  N  N  N  4.356  -0.907   8.774  -2.086  -0.115  -1.138  H11  JLT  31  
JLT  H12  H12  H  0  1  N  N  N  6.487  -0.898  10.944  -2.545  -1.599   1.491  H12  JLT  32  
JLT  H13  H13  H  0  1  N  N  N  5.850  -2.522   8.470  -1.943  -2.648  -1.315  H13  JLT  33  
JLT  H14  H14  H  0  1  N  N  N  4.507  -1.880  11.767  -4.432  -2.391   0.259  H14  JLT  34  
JLT  H15  H15  H  0  1  N  N  N  7.256   4.902   5.109   4.805  -0.761  -1.570  H15  JLT  35  
JLT  H16  H16  H  0  1  N  N  N  5.582   1.826   4.607   5.431   1.994  -0.161  H16  JLT  36  
JLT  H17  H17  H  0  1  N  N  N  3.063   1.476  13.407  -3.394   2.633  -1.780  H17  JLT  37  
JLT  H18  H18  H  0  1  N  N  N  1.995  -1.617  12.070  -2.441   4.634   0.468  H18  JLT  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JLT  O15  P10  DOUB  N  N   1  
JLT  O14  P10  SING  N  N   2  
JLT  P10  O12  SING  N  N   3  
JLT  P10  C9   SING  N  N   4  
JLT  C8   C9   SING  N  N   5  
JLT  C8   C5   SING  N  N   6  
JLT  O1   C4   SING  N  N   7  
JLT  C5   C4   SING  N  N   8  
JLT  C5   O6   SING  N  N   9  
JLT  C4   C3   SING  N  N  10  
JLT  O6   C1   SING  N  N  11  
JLT  C3   O2   SING  N  N  12  
JLT  C3   C2   SING  N  N  13  
JLT  C1   C7   SING  N  N  14  
JLT  C1   C2   SING  N  N  15  
JLT  C7   P11  SING  N  N  16  
JLT  C2   O3   SING  N  N  17  
JLT  O18  P11  DOUB  N  N  18  
JLT  P11  O17  SING  N  N  19  
JLT  P11  O16  SING  N  N  20  
JLT  C4   H1   SING  N  N  21  
JLT  C5   H2   SING  N  N  22  
JLT  C7   H3   SING  N  N  23  
JLT  C7   H4   SING  N  N  24  
JLT  C8   H5   SING  N  N  25  
JLT  C8   H6   SING  N  N  26  
JLT  O2   H7   SING  N  N  27  
JLT  C9   H8   SING  N  N  28  
JLT  C9   H9   SING  N  N  29  
JLT  O1   H10  SING  N  N  30  
JLT  C1   H11  SING  N  N  31  
JLT  C2   H12  SING  N  N  32  
JLT  C3   H13  SING  N  N  33  
JLT  O3   H14  SING  N  N  34  
JLT  O12  H15  SING  N  N  35  
JLT  O14  H16  SING  N  N  36  
JLT  O16  H17  SING  N  N  37  
JLT  O17  H18  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JLT  InChI             InChI                 1.03   "InChI=1S/C8H18O10P2/c9-6-4(1-2-19(12,13)14)18-5(3-20(15,16)17)7(10)8(6)11/h4-11H,1-3H2,(H2,12,13,14)(H2,15,16,17)/t4-,5+,6-,7+,8+/m0/s1"  
JLT  InChIKey          InChI                 1.03   BSBIMNCSLGLJLO-BZCSJUTBSA-N  
JLT  SMILES_CANONICAL  CACTVS                3.385  "O[C@@H]1[C@@H](O)[C@H](CC[P](O)(O)=O)O[C@H](C[P](O)(O)=O)[C@H]1O"  
JLT  SMILES            CACTVS                3.385  "O[CH]1[CH](O)[CH](CC[P](O)(O)=O)O[CH](C[P](O)(O)=O)[CH]1O"  
JLT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C(CP(=O)(O)O)[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CP(=O)(O)O)O)O)O"  
JLT  SMILES            "OpenEye OEToolkits"  2.0.7  "C(CP(=O)(O)O)C1C(C(C(C(O1)CP(=O)(O)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          JLT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{S},3~{S},4~{R},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-(2-phosphonoethyl)oxan-2-yl]methylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
JLT  "CARBOHYDRATE ISOMER"  D         PDB  ?  
JLT  "CARBOHYDRATE RING"    pyranose  PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JLT  "Create component"      2019-03-11  RCSB  
JLT  "Initial release"       2020-04-01  RCSB  
JLT  "Other modification"    2020-07-03  RCSB  
JLT  "Modify name"           2020-07-17  RCSB  
JLT  "Modify synonyms"       2020-07-17  RCSB  
JLT  "Modify internal type"  2020-07-17  RCSB  
JLT  "Modify linking type"   2020-07-17  RCSB  
##
