data_SYT
#

_chem_comp.id                                   SYT
_chem_comp.name                                 "(5S,12bS)-5-methyl-6,7,12b,13-tetrahydro-2H,4H,10H-[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquinolino[3,2-a]isoquinolin-5-ium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H20 N O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2019-05-29
_chem_comp.pdbx_modified_date                   2019-08-09
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       338.377
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SYT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6P3O
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SYT  C07   C1   C  0  1  N  N  N  68.742  40.558   7.562  -0.458   2.206  -1.145  C07   SYT   1  
SYT  N7    N1   N  1  1  N  N  S  68.994  41.992   7.689   0.284   1.203  -0.370  N7    SYT   2  
SYT  C8    C2   C  0  1  N  N  N  68.864  42.408   9.116   1.670   1.222  -0.811  C8    SYT   3  
SYT  C8A   C3   C  0  1  Y  N  N  67.418  42.536   9.570   2.441   0.055  -0.269  C8A   SYT   4  
SYT  C9    C4   C  0  1  Y  N  N  67.076  42.577  10.912   3.829   0.077  -0.274  C9    SYT   5  
SYT  O18   O1   O  0  1  N  N  N  67.862  42.528  12.026   4.684   1.034  -0.700  O18   SYT   6  
SYT  C15   C5   C  0  1  N  N  N  66.999  42.573  13.245   5.959   0.703  -0.111  C15   SYT   7  
SYT  O19   O2   O  0  1  N  N  N  65.621  42.714  12.682   5.889  -0.724   0.095  O19   SYT   8  
SYT  C10   C6   C  0  1  Y  N  N  65.678  42.693  11.320   4.573  -1.007   0.216  C10   SYT   9  
SYT  C11   C7   C  0  1  Y  N  N  64.640  42.763  10.391   3.940  -2.134   0.720  C11   SYT  10  
SYT  C12   C8   C  0  1  Y  N  N  64.960  42.722   9.026   2.553  -2.137   0.723  C12   SYT  11  
SYT  C12A  C9   C  0  0  Y  N  N  66.288  42.620   8.581   1.814  -1.065   0.246  C12A  SYT  12  
SYT  C13   C10  C  0  1  N  N  N  66.560  42.582   7.091   0.312  -1.143   0.319  C13   SYT  13  
SYT  C13A  C11  C  0  0  N  N  S  68.068  42.720   6.767  -0.336  -0.106  -0.602  C13A  SYT  14  
SYT  C13B  C12  C  0  0  Y  N  N  68.499  44.147   6.623  -1.801  -0.013  -0.221  C13B  SYT  15  
SYT  C4A   C13  C  0  1  Y  N  N  69.981  44.439   6.594  -2.245   0.939   0.669  C4A   SYT  16  
SYT  C5    C14  C  0  1  N  N  N  71.000  43.337   6.733  -1.311   1.944   1.299  C5    SYT  17  
SYT  C6    C15  C  0  1  N  N  N  70.420  42.036   7.292   0.148   1.532   1.052  C6    SYT  18  
SYT  C1    C16  C  0  1  Y  N  N  67.571  45.193   6.492  -2.672  -0.929  -0.806  C1    SYT  19  
SYT  C2    C17  C  0  1  Y  N  N  68.096  46.470   6.351  -4.012  -0.857  -0.458  C2    SYT  20  
SYT  O16   O3   O  0  1  N  N  N  67.451  47.655   6.217  -5.062  -1.605  -0.862  O16   SYT  21  
SYT  C14   C18  C  0  1  N  N  N  68.438  48.706   6.164  -6.237  -0.851  -0.497  C14   SYT  22  
SYT  O17   O4   O  0  1  N  N  N  69.727  48.075   6.185  -5.801  -0.041   0.615  O17   SYT  23  
SYT  C3    C19  C  0  1  Y  N  N  69.534  46.738   6.331  -4.467   0.109   0.453  C3    SYT  24  
SYT  C4    C20  C  0  1  Y  N  N  70.476  45.733   6.451  -3.592   1.017   1.027  C4    SYT  25  
SYT  H1    H1   H  0  1  N  N  N  69.415  40.006   8.234  -0.399   1.962  -2.206  H1    SYT  26  
SYT  H2    H2   H  0  1  N  N  N  67.698  40.344   7.833  -1.502   2.208  -0.831  H2    SYT  27  
SYT  H3    H3   H  0  1  N  N  N  68.923  40.245   6.523  -0.025   3.191  -0.974  H3    SYT  28  
SYT  H4    H4   H  0  1  N  N  N  69.364  41.658   9.746   1.698   1.192  -1.900  H4    SYT  29  
SYT  H5    H5   H  0  1  N  N  N  69.359  43.382   9.243   2.138   2.146  -0.470  H5    SYT  30  
SYT  H6    H6   H  0  1  N  N  N  67.093  41.646  13.830   6.771   0.951  -0.795  H6    SYT  31  
SYT  H7    H7   H  0  1  N  N  N  63.613  42.847  10.715   4.504  -2.975   1.095  H7    SYT  32  
SYT  H8    H8   H  0  1  N  N  N  64.164  42.770   8.298   2.032  -3.001   1.108  H8    SYT  33  
SYT  H9    H9   H  0  1  N  N  N  66.017  43.410   6.611  -0.009  -2.140   0.017  H9    SYT  34  
SYT  H10   H10  H  0  1  N  N  N  66.198  41.624   6.689  -0.007  -0.960   1.344  H10   SYT  35  
SYT  H11   H11  H  0  1  N  N  N  68.200  42.260   5.776  -0.219  -0.399  -1.645  H11   SYT  36  
SYT  H12   H12  H  0  1  N  N  N  71.426  43.130   5.740  -1.494   2.928   0.866  H12   SYT  37  
SYT  H13   H13  H  0  1  N  N  N  71.796  43.682   7.409  -1.495   1.985   2.372  H13   SYT  38  
SYT  H14   H14  H  0  1  N  N  N  70.563  41.264   6.522   0.397   0.669   1.670  H14   SYT  39  
SYT  H15   H15  H  0  1  N  N  N  71.010  41.778   8.184   0.812   2.362   1.292  H15   SYT  40  
SYT  H16   H16  H  0  1  N  N  N  66.506  45.013   6.501  -2.316  -1.671  -1.506  H16   SYT  41  
SYT  H17   H17  H  0  1  N  N  N  68.329  49.371   7.034  -6.559  -0.220  -1.326  H17   SYT  42  
SYT  H18   H18  H  0  1  N  N  N  71.536  45.940   6.435  -3.941   1.760   1.728  H18   SYT  43  
SYT  H19   H19  H  0  1  N  N  N  67.256  43.434  13.879   6.088   1.223   0.838  H19   SYT  44  
SYT  H20   H20  H  0  1  N  N  N  68.319  49.290   5.239  -7.041  -1.520  -0.191  H20   SYT  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SYT  C14   O17   SING  N  N   1  
SYT  C14   O16   SING  N  N   2  
SYT  O17   C3    SING  N  N   3  
SYT  O16   C2    SING  N  N   4  
SYT  C3    C2    DOUB  Y  N   5  
SYT  C3    C4    SING  Y  N   6  
SYT  C2    C1    SING  Y  N   7  
SYT  C4    C4A   DOUB  Y  N   8  
SYT  C1    C13B  DOUB  Y  N   9  
SYT  C4A   C13B  SING  Y  N  10  
SYT  C4A   C5    SING  N  N  11  
SYT  C13B  C13A  SING  N  N  12  
SYT  C5    C6    SING  N  N  13  
SYT  C13A  C13   SING  N  N  14  
SYT  C13A  N7    SING  N  N  15  
SYT  C13   C12A  SING  N  N  16  
SYT  C6    N7    SING  N  N  17  
SYT  C07   N7    SING  N  N  18  
SYT  N7    C8    SING  N  N  19  
SYT  C12A  C12   DOUB  Y  N  20  
SYT  C12A  C8A   SING  Y  N  21  
SYT  C12   C11   SING  Y  N  22  
SYT  C8    C8A   SING  N  N  23  
SYT  C8A   C9    DOUB  Y  N  24  
SYT  C11   C10   DOUB  Y  N  25  
SYT  C9    C10   SING  Y  N  26  
SYT  C9    O18   SING  N  N  27  
SYT  C10   O19   SING  N  N  28  
SYT  O18   C15   SING  N  N  29  
SYT  O19   C15   SING  N  N  30  
SYT  C07   H1    SING  N  N  31  
SYT  C07   H2    SING  N  N  32  
SYT  C07   H3    SING  N  N  33  
SYT  C8    H4    SING  N  N  34  
SYT  C8    H5    SING  N  N  35  
SYT  C15   H6    SING  N  N  36  
SYT  C11   H7    SING  N  N  37  
SYT  C12   H8    SING  N  N  38  
SYT  C13   H9    SING  N  N  39  
SYT  C13   H10   SING  N  N  40  
SYT  C13A  H11   SING  N  N  41  
SYT  C5    H12   SING  N  N  42  
SYT  C5    H13   SING  N  N  43  
SYT  C6    H14   SING  N  N  44  
SYT  C6    H15   SING  N  N  45  
SYT  C1    H16   SING  N  N  46  
SYT  C14   H17   SING  N  N  47  
SYT  C4    H18   SING  N  N  48  
SYT  C15   H19   SING  N  N  49  
SYT  C14   H20   SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SYT  SMILES            ACDLabs               12.01  "C[N+]34Cc2c1c(OCO1)ccc2CC3c5c(CC4)cc6c(c5)OCO6"  
SYT  InChI             InChI                 1.03   "InChI=1S/C20H20NO4/c1-21-5-4-13-7-18-19(24-10-23-18)8-14(13)16(21)6-12-2-3-17-20(15(12)9-21)25-11-22-17/h2-3,7-8,16H,4-6,9-11H2,1H3/q+1/t16-,21-/m0/s1"  
SYT  InChIKey          InChI                 1.03   GBUUKFRQPCPYPW-KKSFZXQISA-N  
SYT  SMILES_CANONICAL  CACTVS                3.385  C[N@@+]12CCc3cc4OCOc4cc3[C@@H]1Cc5ccc6OCOc6c5C2  
SYT  SMILES            CACTVS                3.385  C[N+]12CCc3cc4OCOc4cc3[CH]1Cc5ccc6OCOc6c5C2  
SYT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[N@@+]12CCc3cc4c(cc3[C@@H]1Cc5ccc6c(c5C2)OCO6)OCO4"  
SYT  SMILES            "OpenEye OEToolkits"  2.0.7  "C[N+]12CCc3cc4c(cc3C1Cc5ccc6c(c5C2)OCO6)OCO4"  
#
_pdbx_chem_comp_identifier.comp_id          SYT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(5S,12bS)-5-methyl-6,7,12b,13-tetrahydro-2H,4H,10H-[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquinolino[3,2-a]isoquinolin-5-ium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SYT  "Create component"  2019-05-29  RCSB  
SYT  "Initial release"   2019-08-14  RCSB  
##
