data_XLT
# 
_chem_comp.id                                    XLT 
_chem_comp.name                                  "5-{3-[(3aR,8aS)-6-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}octahydropyrrolo[3,4-d]azepin-2(1H)-yl]-3-oxopropyl}-1,3-oxazol-2(3H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H38 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-07 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        538.635 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XLT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G7D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XLT C10 C1  C 0 1 Y N N N N N -13.139 9.012  44.905 -0.410 0.416  -1.922 C10 XLT 1  
XLT C11 C2  C 0 1 Y N N N N N -12.384 8.684  43.779 -1.270 1.456  -1.633 C11 XLT 2  
XLT C13 C3  C 0 1 Y N N N N N -12.659 6.409  44.170 -2.780 0.031  -0.623 C13 XLT 3  
XLT C16 C4  C 0 1 N N N N N N -11.609 4.866  42.654 -4.744 1.036  0.257  C16 XLT 4  
XLT C17 C5  C 0 1 N N N N N N -11.470 3.327  42.575 -6.035 0.651  0.984  C17 XLT 5  
XLT C18 C6  C 0 1 N N N N N N -10.761 2.917  41.267 -6.812 1.919  1.353  C18 XLT 6  
XLT C19 C7  C 0 1 N N N N N N -10.661 1.375  41.231 -8.138 1.522  2.008  C19 XLT 7  
XLT C21 C8  C 0 1 N N N N N N -10.516 1.279  43.628 -8.222 -0.530 0.770  C21 XLT 8  
XLT C22 C9  C 0 1 N N N N N N -10.611 2.806  43.726 -6.900 -0.216 0.065  C22 XLT 9  
XLT C23 C10 C 0 1 N N N N N N -11.795 9.705  42.883 -0.902 2.859  -2.043 C23 XLT 10 
XLT C24 C11 C 0 1 N N N N N N -10.515 9.387  42.126 -0.007 3.660  -1.094 C24 XLT 11 
XLT C25 C12 C 0 1 N N N N N N -11.828 9.519  41.369 0.559  3.127  -2.412 C25 XLT 12 
XLT C27 C13 C 0 1 N N N N N N -13.572 12.386 50.630 3.904  -3.706 0.916  C27 XLT 13 
XLT C1  C14 C 0 1 N N N N N N -12.861 8.946  48.193 -0.603 -3.090 0.249  C1  XLT 14 
XLT C2  C15 C 0 1 N N N N N N -12.176 10.249 47.820 0.186  -3.754 1.383  C2  XLT 15 
XLT C3  C16 C 0 1 N N S N N N -12.683 11.497 48.546 1.633  -3.359 1.432  C3  XLT 16 
XLT C4  C17 C 0 1 N N R N N N -13.974 11.484 49.455 2.526  -4.419 0.657  C4  XLT 17 
XLT C5  C18 C 0 1 N N N N N N -14.491 10.160 50.011 2.327  -4.168 -0.834 C5  XLT 18 
XLT C6  C19 C 0 1 N N N N N N -15.184 9.296  48.942 0.915  -4.285 -1.342 C6  XLT 19 
XLT N7  N1  N 0 1 N N N N N N -14.255 8.981  47.840 0.149  -3.096 -1.010 N7  XLT 20 
XLT C8  C20 C 0 1 N N N N N N -14.682 8.317  46.734 0.131  -2.030 -1.834 C8  XLT 21 
XLT C9  C21 C 0 1 Y N N N N N -13.693 7.952  45.664 -0.763 -0.884 -1.544 C9  XLT 22 
XLT N12 N2  N 0 1 Y N N N N N -12.146 7.401  43.389 -2.409 1.241  -1.004 N12 XLT 23 
XLT C14 C22 C 0 1 Y N N N N N -13.444 6.603  45.339 -1.979 -1.073 -0.885 C14 XLT 24 
XLT O15 O1  O 0 1 N N N N N N -12.393 5.127  43.843 -3.965 -0.137 0.017  O15 XLT 25 
XLT O20 O2  O 0 1 N N N N N N -9.960  0.866  42.376 -8.880 0.691  1.113  O20 XLT 26 
XLT O26 O3  O 0 1 N N N N N N -15.865 8.057  46.611 0.847  -2.008 -2.816 O26 XLT 27 
XLT N28 N3  N 0 1 N N N N N N -12.105 12.254 50.721 3.617  -2.257 0.896  N28 XLT 28 
XLT C29 C23 C 0 1 N N N N N N -11.513 12.017 49.420 2.141  -2.062 0.848  C29 XLT 29 
XLT C30 C24 C 0 1 N N N N N N -11.408 12.380 51.917 4.538  -1.274 0.919  C30 XLT 30 
XLT C31 C25 C 0 1 N N N N N N -9.900  12.212 51.844 4.102  0.168  0.895  C31 XLT 31 
XLT C32 C26 C 0 1 N N N N N N -9.244  12.899 53.043 5.334  1.074  0.928  C32 XLT 32 
XLT C33 C27 C 0 1 N N N N N N -7.837  12.441 53.152 4.898  2.517  0.905  C33 XLT 33 
XLT C34 C28 C 0 1 N N N N N N -7.108  11.972 54.195 4.729  3.293  1.966  C34 XLT 34 
XLT N35 N4  N 0 1 N N N N N N -5.822  11.691 53.687 4.324  4.542  1.513  N35 XLT 35 
XLT C36 C29 C 0 1 N N N N N N -5.829  12.013 52.304 4.261  4.479  0.167  C36 XLT 36 
XLT O37 O4  O 0 1 N N N N N N -7.073  12.478 51.979 4.618  3.240  -0.205 O37 XLT 37 
XLT O38 O5  O 0 1 N N N N N N -4.984  11.928 51.451 3.942  5.386  -0.578 O38 XLT 38 
XLT O39 O6  O 0 1 N N N N N N -12.016 12.642 52.974 5.719  -1.550 0.959  O39 XLT 39 
XLT H50 H1  H 0 1 N N N N N N -13.296 10.042 45.189 0.520  0.602  -2.438 H50 XLT 40 
XLT H53 H2  H 0 1 N N N N N N -12.125 5.251  41.762 -4.989 1.510  -0.693 H53 XLT 41 
XLT H52 H3  H 0 1 N N N N N N -10.618 5.337  42.737 -4.174 1.731  0.874  H52 XLT 42 
XLT H54 H4  H 0 1 N N N N N N -12.467 2.865  42.615 -5.792 0.096  1.889  H54 XLT 43 
XLT H56 H5  H 0 1 N N N N N N -11.341 3.272  40.403 -6.225 2.516  2.051  H56 XLT 44 
XLT H55 H6  H 0 1 N N N N N N -9.753  3.356  41.237 -7.010 2.500  0.452  H55 XLT 45 
XLT H57 H7  H 0 1 N N N N N N -11.676 0.951  41.216 -7.938 0.976  2.930  H57 XLT 46 
XLT H58 H8  H 0 1 N N N N N N -10.124 1.073  40.320 -8.714 2.419  2.234  H58 XLT 47 
XLT H60 H9  H 0 1 N N N N N N -11.524 0.851  43.729 -8.860 -1.112 0.104  H60 XLT 48 
XLT H59 H10 H 0 1 N N N N N N -9.877  0.908  44.443 -8.024 -1.104 1.675  H59 XLT 49 
XLT H62 H11 H 0 1 N N N N N N -9.604  3.243  43.661 -7.100 0.322  -0.862 H62 XLT 50 
XLT H61 H12 H 0 1 N N N N N N -11.071 3.086  44.685 -6.377 -1.145 -0.158 H61 XLT 51 
XLT H63 H13 H 0 1 N N N N N N -11.886 10.747 43.223 -1.668 3.405  -2.592 H63 XLT 52 
XLT H64 H14 H 0 1 N N N N N N -9.737  10.157 42.015 -0.185 4.733  -1.020 H64 XLT 53 
XLT H65 H15 H 0 1 N N N N N N -10.042 8.400  42.237 0.315  3.172  -0.174 H65 XLT 54 
XLT H67 H16 H 0 1 N N N N N N -12.305 8.628  40.934 1.253  2.288  -2.359 H67 XLT 55 
XLT H66 H17 H 0 1 N N N N N N -12.000 10.384 40.712 0.753  3.849  -3.205 H66 XLT 56 
XLT H69 H18 H 0 1 N N N N N N -13.856 13.430 50.432 4.301  -3.998 1.888  H69 XLT 57 
XLT H68 H19 H 0 1 N N N N N N -14.050 12.046 51.561 4.614  -3.960 0.128  H68 XLT 58 
XLT H43 H20 H 0 1 N N N N N N -12.374 8.117  47.658 -1.541 -3.628 0.106  H43 XLT 59 
XLT H42 H21 H 0 1 N N N N N N -12.768 8.787  49.278 -0.825 -2.060 0.526  H42 XLT 60 
XLT H44 H22 H 0 1 N N N N N N -11.104 10.142 48.040 -0.279 -3.487 2.333  H44 XLT 61 
XLT H45 H23 H 0 1 N N N N N N -12.315 10.407 46.740 0.125  -4.836 1.263  H45 XLT 62 
XLT H41 H24 H 0 1 N N N N N N -12.859 12.261 47.775 1.947  -3.384 2.476  H41 XLT 63 
XLT H40 H25 H 0 1 N N N N N N -14.787 11.974 48.899 2.441  -5.453 0.989  H40 XLT 64 
XLT H47 H26 H 0 1 N N N N N N -13.641 9.596  50.423 2.687  -3.164 -1.060 H47 XLT 65 
XLT H46 H27 H 0 1 N N N N N N -15.213 10.373 50.813 2.946  -4.877 -1.384 H46 XLT 66 
XLT H48 H28 H 0 1 N N N N N N -15.528 8.358  49.403 0.932  -4.410 -2.425 H48 XLT 67 
XLT H49 H29 H 0 1 N N N N N N -16.048 9.845  48.539 0.441  -5.155 -0.888 H49 XLT 68 
XLT H51 H30 H 0 1 N N N N N N -13.820 5.782  45.931 -2.286 -2.060 -0.572 H51 XLT 69 
XLT H71 H31 H 0 1 N N N N N N -10.715 11.263 49.488 1.799  -1.937 -0.179 H71 XLT 70 
XLT H70 H32 H 0 1 N N N N N N -11.103 12.949 49.005 1.840  -1.214 1.464  H70 XLT 71 
XLT H72 H33 H 0 1 N N N N N N -9.651  11.141 51.856 3.534  0.361  -0.015 H72 XLT 72 
XLT H73 H34 H 0 1 N N N N N N -9.527  12.665 50.914 3.477  0.373  1.764  H73 XLT 73 
XLT H75 H35 H 0 1 N N N N N N -9.267  13.990 52.901 5.902  0.882  1.838  H75 XLT 74 
XLT H74 H36 H 0 1 N N N N N N -9.789  12.637 53.962 5.959  0.870  0.059  H74 XLT 75 
XLT H76 H37 H 0 1 N N N N N N -7.445  11.840 55.213 4.878  3.006  2.997  H76 XLT 76 
XLT H77 H38 H 0 1 N N N N N N -5.047  11.331 54.206 4.124  5.316  2.062  H77 XLT 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XLT C1  C2  SING N N 1  
XLT C1  N7  SING N N 2  
XLT C2  C3  SING N N 3  
XLT C3  C4  SING N N 4  
XLT C3  C29 SING N N 5  
XLT C4  C5  SING N N 6  
XLT C4  C27 SING N N 7  
XLT C5  C6  SING N N 8  
XLT C6  N7  SING N N 9  
XLT N7  C8  SING N N 10 
XLT C8  C9  SING N N 11 
XLT C8  O26 DOUB N N 12 
XLT C9  C10 DOUB Y N 13 
XLT C9  C14 SING Y N 14 
XLT C10 C11 SING Y N 15 
XLT C11 N12 DOUB Y N 16 
XLT C11 C23 SING N N 17 
XLT N12 C13 SING Y N 18 
XLT C13 C14 DOUB Y N 19 
XLT C13 O15 SING N N 20 
XLT O15 C16 SING N N 21 
XLT C16 C17 SING N N 22 
XLT C17 C18 SING N N 23 
XLT C17 C22 SING N N 24 
XLT C18 C19 SING N N 25 
XLT C19 O20 SING N N 26 
XLT O20 C21 SING N N 27 
XLT C21 C22 SING N N 28 
XLT C23 C24 SING N N 29 
XLT C23 C25 SING N N 30 
XLT C24 C25 SING N N 31 
XLT C27 N28 SING N N 32 
XLT N28 C29 SING N N 33 
XLT N28 C30 SING N N 34 
XLT C30 C31 SING N N 35 
XLT C30 O39 DOUB N N 36 
XLT C31 C32 SING N N 37 
XLT C32 C33 SING N N 38 
XLT C33 C34 DOUB N N 39 
XLT C33 O37 SING N N 40 
XLT C34 N35 SING N N 41 
XLT N35 C36 SING N N 42 
XLT C36 O37 SING N N 43 
XLT C36 O38 DOUB N N 44 
XLT C10 H50 SING N N 45 
XLT C16 H53 SING N N 46 
XLT C16 H52 SING N N 47 
XLT C17 H54 SING N N 48 
XLT C18 H56 SING N N 49 
XLT C18 H55 SING N N 50 
XLT C19 H57 SING N N 51 
XLT C19 H58 SING N N 52 
XLT C21 H60 SING N N 53 
XLT C21 H59 SING N N 54 
XLT C22 H62 SING N N 55 
XLT C22 H61 SING N N 56 
XLT C23 H63 SING N N 57 
XLT C24 H64 SING N N 58 
XLT C24 H65 SING N N 59 
XLT C25 H67 SING N N 60 
XLT C25 H66 SING N N 61 
XLT C27 H69 SING N N 62 
XLT C27 H68 SING N N 63 
XLT C1  H43 SING N N 64 
XLT C1  H42 SING N N 65 
XLT C2  H44 SING N N 66 
XLT C2  H45 SING N N 67 
XLT C3  H41 SING N N 68 
XLT C4  H40 SING N N 69 
XLT C5  H47 SING N N 70 
XLT C5  H46 SING N N 71 
XLT C6  H48 SING N N 72 
XLT C6  H49 SING N N 73 
XLT C14 H51 SING N N 74 
XLT C29 H71 SING N N 75 
XLT C29 H70 SING N N 76 
XLT C31 H72 SING N N 77 
XLT C31 H73 SING N N 78 
XLT C32 H75 SING N N 79 
XLT C32 H74 SING N N 80 
XLT C34 H76 SING N N 81 
XLT N35 H77 SING N N 82 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XLT SMILES           ACDLabs              12.01 "O=C1NC=C(O1)CCC(=O)N1CC2CCN(CCC2C1)C(=O)c1cc(OCC2CCOCC2)nc(c1)C1CC1"                                                                                                                     
XLT InChI            InChI                1.06  "InChI=1S/C29H38N4O6/c34-27(4-3-24-15-30-29(36)39-24)33-16-21-5-9-32(10-6-22(21)17-33)28(35)23-13-25(20-1-2-20)31-26(14-23)38-18-19-7-11-37-12-8-19/h13-15,19-22H,1-12,16-18H2,(H,30,36)" 
XLT InChIKey         InChI                1.06  MXHZCHZAGUZBOU-UHFFFAOYSA-N                                                                                                                                                               
XLT SMILES_CANONICAL CACTVS               3.385 "O=C1NC=C(CCC(=O)N2C[C@H]3CCN(CC[C@H]3C2)C(=O)c4cc(OCC5CCOCC5)nc(c4)C6CC6)O1"                                                                                                             
XLT SMILES           CACTVS               3.385 "O=C1NC=C(CCC(=O)N2C[CH]3CCN(CC[CH]3C2)C(=O)c4cc(OCC5CCOCC5)nc(c4)C6CC6)O1"                                                                                                               
XLT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(nc1C2CC2)OCC3CCOCC3)C(=O)N4CC[C@@H]5CN(C[C@@H]5CC4)C(=O)CCC6=CNC(=O)O6"                                                                                                           
XLT SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(cc(nc1C2CC2)OCC3CCOCC3)C(=O)N4CCC5CN(CC5CC4)C(=O)CCC6=CNC(=O)O6"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XLT "SYSTEMATIC NAME" ACDLabs              12.01 "5-{3-[(3aR,8aS)-6-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}octahydropyrrolo[3,4-d]azepin-2(1H)-yl]-3-oxopropyl}-1,3-oxazol-2(3H)-one"                                              
XLT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[3-[(3~{a}~{R},8~{a}~{S})-6-[2-cyclopropyl-6-(oxan-4-ylmethoxy)pyridin-4-yl]carbonyl-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-2-yl]-3-oxidanylidene-propyl]-3~{H}-1,3-oxazol-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XLT "Create component" 2023-06-07 RCSB 
XLT "Initial release"  2024-12-18 RCSB 
# 
