data_5BU
# 
_chem_comp.id                                    5BU 
_chem_comp.name                                  "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H12 Br N2 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               U 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-11-05 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        403.077 
_chem_comp.one_letter_code                       U 
_chem_comp.three_letter_code                     5BU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1JZV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5BU P      P    P  0 1 N N N 8.918  26.449 66.999 2.787  0.324  -4.407 P      5BU 1  
5BU OP1    O1P  O  0 1 N N N 9.879  27.593 66.855 3.659  1.172  -5.286 OP1    5BU 2  
5BU OP2    O2P  O  0 1 N N N 8.687  25.535 65.863 1.198  0.588  -4.548 OP2    5BU 3  
5BU OP3    O3P  O  0 1 N Y N ?      ?      ?      2.921  -1.270 -4.647 OP3    5BU 4  
5BU "O5'"  O5*  O  0 1 N N N 7.559  27.076 67.518 3.063  0.476  -2.819 "O5'"  5BU 5  
5BU "C5'"  C5*  C  0 1 N N N 6.433  26.247 67.792 2.282  -0.292 -1.921 "C5'"  5BU 6  
5BU "C4'"  C4*  C  0 1 N N R 5.190  27.097 67.997 2.725  0.023  -0.498 "C4'"  5BU 7  
5BU "O4'"  O4*  O  0 1 N N N 5.272  27.835 69.250 2.470  1.422  -0.246 "O4'"  5BU 8  
5BU "C3'"  C3*  C  0 1 N N S 4.951  28.186 66.961 1.940  -0.742 0.560  "C3'"  5BU 9  
5BU "O3'"  O3*  O  0 1 N N N 4.330  27.702 65.781 2.742  -0.809 1.739  "O3'"  5BU 10 
5BU "C2'"  C2*  C  0 1 N N R 4.030  29.129 67.705 0.748  0.163  0.786  "C2'"  5BU 11 
5BU "O2'"  O2*  O  0 1 N N N 2.714  28.628 67.777 0.137  -0.058 2.041  "O2'"  5BU 12 
5BU "C1'"  C1*  C  0 1 N N R 4.644  29.095 69.102 1.373  1.543  0.675  "C1'"  5BU 13 
5BU N1     N1   N  0 1 N N N 5.637  30.152 69.329 0.452  2.524  0.177  N1     5BU 14 
5BU C2     C2   C  0 1 N N N 5.166  31.351 69.802 -0.299 3.337  1.055  C2     5BU 15 
5BU O2     O2   O  0 1 N N N 3.971  31.574 69.935 -0.225 3.268  2.284  O2     5BU 16 
5BU N3     N3   N  0 1 N N N 6.124  32.282 70.094 -1.158 4.250  0.432  N3     5BU 17 
5BU C4     C4   C  0 1 N N N 7.492  32.132 69.925 -1.340 4.431  -0.932 C4     5BU 18 
5BU O4     O4   O  0 1 N N N 8.263  33.029 70.302 -2.117 5.257  -1.404 O4     5BU 19 
5BU C5     C5   C  0 1 N N N 7.885  30.873 69.373 -0.515 3.539  -1.787 C5     5BU 20 
5BU C6     C6   C  0 1 N N N 6.984  29.949 69.104 0.309  2.664  -1.199 C6     5BU 21 
5BU BR     BR   BR 0 0 N N N 9.700  30.535 69.023 -0.667 3.683  -3.638 BR     5BU 22 
5BU HOP2   2HOP H  0 0 N N N 8.078  24.810 65.954 0.799  0.616  -5.443 HOP2   5BU 23 
5BU HOP3   3HOP H  0 0 N N N -0.608 -0.724 0.091  2.886  -1.617 -5.563 HOP3   5BU 24 
5BU "H5'"  1H5* H  0 1 N N N 6.283  25.474 67.001 1.229  -0.035 -2.051 "H5'"  5BU 25 
5BU "H5''" 2H5* H  0 0 N N N 6.618  25.566 68.655 2.428  -1.352 -2.133 "H5''" 5BU 26 
5BU "H4'"  H4*  H  0 1 N N N 4.372  26.341 67.946 3.804  -0.139 -0.410 "H4'"  5BU 27 
5BU "H3'"  H3*  H  0 1 N N N 5.898  28.648 66.598 1.675  -1.764 0.277  "H3'"  5BU 28 
5BU "HO3'" H3T  H  0 0 N Y N 4.180  28.381 65.134 3.447  -0.153 1.628  "HO3'" 5BU 29 
5BU "H2'"  H2*  H  0 1 N N N 3.952  30.133 67.228 -0.000 0.004  -0.000 "H2'"  5BU 30 
5BU "HO2'" 2HO* H  0 0 N N N 2.135  29.219 68.244 -0.494 0.669  2.185  "HO2'" 5BU 31 
5BU "H1'"  H1*  H  0 1 N N N 3.830  29.262 69.845 1.754  1.910  1.633  "H1'"  5BU 32 
5BU H3     H3   H  0 1 N N N 5.788  33.167 70.471 -1.708 4.845  1.045  H3     5BU 33 
5BU H6     H6   H  0 1 N N N 7.359  28.999 68.687 0.928  1.994  -1.788 H6     5BU 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5BU P     OP1    DOUB N N 1  
5BU P     OP2    SING N N 2  
5BU P     OP3    SING N N 3  
5BU P     "O5'"  SING N N 4  
5BU OP2   HOP2   SING N N 5  
5BU OP3   HOP3   SING N N 6  
5BU "O5'" "C5'"  SING N N 7  
5BU "C5'" "C4'"  SING N N 8  
5BU "C5'" "H5'"  SING N N 9  
5BU "C5'" "H5''" SING N N 10 
5BU "C4'" "O4'"  SING N N 11 
5BU "C4'" "C3'"  SING N N 12 
5BU "C4'" "H4'"  SING N N 13 
5BU "O4'" "C1'"  SING N N 14 
5BU "C3'" "O3'"  SING N N 15 
5BU "C3'" "C2'"  SING N N 16 
5BU "C3'" "H3'"  SING N N 17 
5BU "O3'" "HO3'" SING N N 18 
5BU "C2'" "O2'"  SING N N 19 
5BU "C2'" "C1'"  SING N N 20 
5BU "C2'" "H2'"  SING N N 21 
5BU "O2'" "HO2'" SING N N 22 
5BU "C1'" N1     SING N N 23 
5BU "C1'" "H1'"  SING N N 24 
5BU N1    C2     SING N N 25 
5BU N1    C6     SING N N 26 
5BU C2    O2     DOUB N N 27 
5BU C2    N3     SING N N 28 
5BU N3    C4     SING N N 29 
5BU N3    H3     SING N N 30 
5BU C4    O4     DOUB N N 31 
5BU C4    C5     SING N N 32 
5BU C5    C6     DOUB N N 33 
5BU C5    BR     SING N N 34 
5BU C6    H6     SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5BU SMILES           ACDLabs              10.04 "BrC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2O)COP(=O)(O)O"                                                                                                       
5BU SMILES_CANONICAL CACTVS               3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(Br)C(=O)NC2=O"                                                                                     
5BU SMILES           CACTVS               3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=C(Br)C(=O)NC2=O"                                                                                            
5BU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)Br"                                                                                    
5BU SMILES           "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)Br"                                                                                                      
5BU InChI            InChI                1.03  "InChI=1S/C9H12BrN2O9P/c10-3-1-12(9(16)11-7(3)15)8-6(14)5(13)4(21-8)2-20-22(17,18)19/h1,4-6,8,13-14H,2H2,(H,11,15,16)(H2,17,18,19)/t4-,5-,6-,8-/m1/s1" 
5BU InChIKey         InChI                1.03  IDPVUMJNEZFMNU-UAKXSSHOSA-N                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5BU "SYSTEMATIC NAME" ACDLabs              10.04 
;5-bromouridine 5'-(dihydrogen phosphate)
;
5BU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(5-bromo-2,4-dioxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5BU "Create component"  2003-11-05 RCSB 
5BU "Modify descriptor" 2011-06-04 RCSB 
# 
