data_MNU
#

_chem_comp.id                                   MNU
_chem_comp.name                                 
;(2R,4S)-1-[(4R)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]-5-[(METHYLAMINO)METHYL]-1,2,3,4-TETRAHYDROPYRIMIDINE-2,4-DIOL-5'-MON
OPHOSPHATE
;

_chem_comp.type                                 "RNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C11 H18 N3 O9 P"
_chem_comp.mon_nstd_parent_comp_id              U
_chem_comp.pdbx_synonyms                        "C5-(METHYLAMINO)METHYL-URIDINE-5'-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-11-12
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       367.249
_chem_comp.one_letter_code                      U
_chem_comp.three_letter_code                    MNU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1XMO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MNU  P       P     P  0  1  N  N  N  202.242  105.340   7.725   2.787   0.324  -4.407  P       MNU   1  
MNU  OP2     O2P   O  0  1  N  N  N  203.172  105.111   8.877   1.198   0.588  -4.548  OP2     MNU   2  
MNU  OP1     O1P   O  0  1  N  N  N  202.008  106.728   7.226   3.659   1.172  -5.286  OP1     MNU   3  
MNU  "O5'"   O5*   O  0  1  N  N  N  200.840  104.714   8.140   3.063   0.476  -2.819  "O5'"   MNU   4  
MNU  "C5'"   C5*   C  0  1  N  N  N  200.106  105.210   9.276   2.282  -0.292  -1.921  "C5'"   MNU   5  
MNU  "C4'"   C4*   C  0  1  N  N  R  198.684  104.732   9.197   2.725   0.023  -0.498  "C4'"   MNU   6  
MNU  "O4'"   O4*   O  0  1  N  N  N  198.036  105.365   8.073   2.470   1.422  -0.246  "O4'"   MNU   7  
MNU  "C1'"   C1*   C  0  1  N  N  R  197.224  104.426   7.393   1.373   1.543   0.675  "C1'"   MNU   8  
MNU  N1      N1    N  0  1  N  N  N  197.686  104.344   5.997   0.452   2.524   0.177  N1      MNU   9  
MNU  C6      C6    C  0  1  N  N  N  198.684  105.170   5.534   0.309   2.663  -1.199  C6      MNU  10  
MNU  C2      C2    C  0  1  N  N  N  197.090  103.424   5.159  -0.300   3.336   1.055  C2      MNU  11  
MNU  O2      O2    O  0  1  N  N  N  196.219  102.671   5.524  -0.225   3.269   2.283  O2      MNU  12  
MNU  N3      N3    N  0  1  N  N  N  197.562  103.415   3.874  -1.159   4.248   0.431  N3      MNU  13  
MNU  C4      C4    C  0  1  N  N  N  198.556  104.213   3.348  -1.338   4.427  -0.932  C4      MNU  14  
MNU  O4      O4    O  0  1  N  N  N  198.876  104.082   2.162  -2.112   5.251  -1.413  O4      MNU  15  
MNU  C5      C5    C  0  1  N  N  N  199.128  105.138   4.278  -0.514   3.537  -1.792  C5      MNU  16  
MNU  C7      C7    C  0  1  N  N  N  200.238  106.088   3.845  -0.651   3.669  -3.275  C7      MNU  17  
MNU  N8      N8    N  0  1  N  N  N  201.484  105.793   4.590  -1.691   2.773  -3.695  N8      MNU  18  
MNU  C9      C9    C  0  1  N  N  N  202.623  106.671   4.230  -1.910   2.836  -5.141  C9      MNU  19  
MNU  "C2'"   C2*   C  0  1  N  N  R  197.264  103.118   8.184   0.748   0.163   0.786  "C2'"   MNU  20  
MNU  "O2'"   O2*   O  0  1  N  N  N  196.170  103.073   9.075   0.137  -0.058   2.041  "O2'"   MNU  21  
MNU  "C3'"   C3*   C  0  1  N  N  S  198.585  103.248   8.919   1.940  -0.742   0.560  "C3'"   MNU  22  
MNU  "O3'"   O3*   O  0  1  N  N  N  198.609  102.539  10.133   2.742  -0.809   1.739  "O3'"   MNU  23  
MNU  OP3     O3P   O  0  1  N  Y  N        ?        ?       ?   2.921  -1.270  -4.647  OP3     MNU  24  
MNU  HOP2    2HOP  H  0  0  N  N  N  203.321  104.228   9.194   0.799   0.616  -5.443  HOP2    MNU  25  
MNU  "H5'"   1H5*  H  0  1  N  N  N  200.174  106.319   9.371   1.229  -0.035  -2.051  "H5'"   MNU  26  
MNU  "H5''"  2H5*  H  0  0  N  N  N  200.590  104.938  10.243   2.428  -1.352  -2.133  "H5''"  MNU  27  
MNU  "H4'"   H4*   H  0  1  N  N  N  198.217  104.974  10.180   3.804  -0.139  -0.410  "H4'"   MNU  28  
MNU  "H1'"   H1*   H  0  1  N  N  N  196.149  104.717   7.334   1.754   1.910   1.633  "H1'"   MNU  29  
MNU  H6      H6    H  0  1  N  N  N  199.157  105.902   6.211   0.928   1.995  -1.790  H6      MNU  30  
MNU  HN3     HN3   H  0  1  N  N  N  197.127  102.743   3.242  -1.709   4.843   1.045  HN3     MNU  31  
MNU  H71     1H7   H  0  1  N  N  N  199.935  107.156   3.947   0.298   3.405  -3.741  H71     MNU  32  
MNU  H72     2H7   H  0  1  N  N  N  200.398  106.067   2.742  -0.911   4.701  -3.514  H72     MNU  33  
MNU  HN8     HN8   H  0  1  N  N  N  201.741  104.812   4.484  -1.449   1.806  -3.449  HN8     MNU  34  
MNU  H91     1H9   H  0  1  N  N  N  202.342  107.744   4.346  -2.471   1.959  -5.475  H91     MNU  35  
MNU  H92     2H9   H  0  1  N  N  N  203.561  106.449   4.791  -0.952   2.862  -5.668  H92     MNU  36  
MNU  H93     3H9   H  0  1  N  N  N  202.808  106.642   3.131  -2.476   3.735  -5.399  H93     MNU  37  
MNU  "H2'"   H2*   H  0  1  N  N  N  197.193  102.189   7.572  -0.000   0.004  -0.000  "H2'"   MNU  38  
MNU  "HO2'"  2HO*  H  0  0  N  N  N  196.195  102.260   9.566   0.677   0.400   2.708  "HO2'"  MNU  39  
MNU  "H3'"   H3*   H  0  1  N  N  N  199.427  102.831   8.318   1.675  -1.764   0.277  "H3'"   MNU  40  
MNU  "HO3'"  H3T   H  0  0  N  Y  N  198.547  101.607   9.959   3.626  -1.086   1.454  "HO3'"  MNU  41  
MNU  HOP3    3HOP  H  0  0  N  N  N   -0.590    0.145  -0.730   2.886  -1.617  -5.563  HOP3    MNU  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MNU  P      OP2     SING  N  N   1  
MNU  P      OP1     DOUB  N  N   2  
MNU  P      "O5'"   SING  N  N   3  
MNU  P      OP3     SING  N  N   4  
MNU  OP2    HOP2    SING  N  N   5  
MNU  "O5'"  "C5'"   SING  N  N   6  
MNU  "C5'"  "C4'"   SING  N  N   7  
MNU  "C5'"  "H5'"   SING  N  N   8  
MNU  "C5'"  "H5''"  SING  N  N   9  
MNU  "C4'"  "O4'"   SING  N  N  10  
MNU  "C4'"  "C3'"   SING  N  N  11  
MNU  "C4'"  "H4'"   SING  N  N  12  
MNU  "O4'"  "C1'"   SING  N  N  13  
MNU  "C1'"  N1      SING  N  N  14  
MNU  "C1'"  "C2'"   SING  N  N  15  
MNU  "C1'"  "H1'"   SING  N  N  16  
MNU  N1     C6      SING  N  N  17  
MNU  N1     C2      SING  N  N  18  
MNU  C6     C5      DOUB  N  N  19  
MNU  C6     H6      SING  N  N  20  
MNU  C2     O2      DOUB  N  N  21  
MNU  C2     N3      SING  N  N  22  
MNU  N3     C4      SING  N  N  23  
MNU  N3     HN3     SING  N  N  24  
MNU  C4     O4      DOUB  N  N  25  
MNU  C4     C5      SING  N  N  26  
MNU  C5     C7      SING  N  N  27  
MNU  C7     N8      SING  N  N  28  
MNU  C7     H71     SING  N  N  29  
MNU  C7     H72     SING  N  N  30  
MNU  N8     C9      SING  N  N  31  
MNU  N8     HN8     SING  N  N  32  
MNU  C9     H91     SING  N  N  33  
MNU  C9     H92     SING  N  N  34  
MNU  C9     H93     SING  N  N  35  
MNU  "C2'"  "O2'"   SING  N  N  36  
MNU  "C2'"  "C3'"   SING  N  N  37  
MNU  "C2'"  "H2'"   SING  N  N  38  
MNU  "O2'"  "HO2'"  SING  N  N  39  
MNU  "C3'"  "O3'"   SING  N  N  40  
MNU  "C3'"  "H3'"   SING  N  N  41  
MNU  "O3'"  "HO3'"  SING  N  N  42  
MNU  OP3    HOP3    SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MNU  SMILES            ACDLabs               10.04  "O=C1NC(=O)N(C=C1CNC)C2OC(C(O)C2O)COP(=O)(O)O"  
MNU  SMILES_CANONICAL  CACTVS                3.341  "CNCC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)NC1=O"  
MNU  SMILES            CACTVS                3.341  "CNCC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)NC1=O"  
MNU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CNCC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"  
MNU  SMILES            "OpenEye OEToolkits"  1.5.0  "CNCC1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O"  
MNU  InChI             InChI                 1.03   "InChI=1S/C11H18N3O9P/c1-12-2-5-3-14(11(18)13-9(5)17)10-8(16)7(15)6(23-10)4-22-24(19,20)21/h3,6-8,10,12,15-16H,2,4H2,1H3,(H,13,17,18)(H2,19,20,21)/t6-,7-,8-,10-/m1/s1"  
MNU  InChIKey          InChI                 1.03   NLAYVTPUNIVXFK-FDDDBJFASA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MNU  "SYSTEMATIC NAME"  ACDLabs               10.04  "5-[(methylamino)methyl]uridine 5'-(dihydrogen phosphate)"  
MNU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-3,4-dihydroxy-5-[5-(methylaminomethyl)-2,4-dioxo-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MNU  "Create component"   2004-11-12  RCSB  
MNU  "Modify descriptor"  2011-06-04  RCSB  
MNU  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     MNU
_pdbx_chem_comp_synonyms.name        "C5-(METHYLAMINO)METHYL-URIDINE-5'-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
