data_52V
# 
_chem_comp.id                                    52V 
_chem_comp.name                                  "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-10-31 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.489 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     52V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3F0Q 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
52V C1   C1   C 0 1 Y N N -27.068 -10.288 40.474 5.055  -1.140 -0.392 C1   52V 1  
52V C2   C2   C 0 1 N N N -34.284 -16.839 39.275 -2.403 3.138  2.746  C2   52V 2  
52V C3   C3   C 0 1 Y N N -27.026 -7.971  40.756 6.245  0.752  -0.960 C3   52V 3  
52V C6   C6   C 0 1 Y N N -28.106 -10.384 41.390 3.898  -0.347 -0.248 C6   52V 4  
52V C12  C12  C 0 1 N N R -29.702 -14.086 42.253 0.338  -2.013 0.836  C12  52V 5  
52V C13  C13  C 0 1 N N N -29.817 -14.298 43.757 0.483  -2.684 2.203  C13  52V 6  
52V C14  C14  C 0 1 Y N N -31.103 -14.115 41.609 -0.717 -0.939 0.912  C14  52V 7  
52V C15  C15  C 0 1 Y N N -31.435 -15.235 40.844 -0.559 0.121  1.785  C15  52V 8  
52V C16  C16  C 0 1 Y N N -32.681 -15.340 40.233 -1.527 1.113  1.861  C16  52V 9  
52V C17  C17  C 0 1 Y N N -33.611 -14.294 40.384 -2.655 1.043  1.060  C17  52V 10 
52V C18  C18  C 0 1 Y N N -33.313 -13.145 41.152 -2.815 -0.025 0.181  C18  52V 11 
52V C26  C26  C 0 1 N N N -36.013 -13.697 42.286 -4.691 -2.197 0.543  C26  52V 12 
52V C20  C20  C 0 1 Y N N -35.565 -12.330 41.797 -4.928 -1.150 -0.515 C20  52V 13 
52V C21  C21  C 0 1 Y N N -36.503 -11.298 41.908 -6.049 -1.221 -1.318 C21  52V 14 
52V C22  C22  C 0 1 Y N N -36.206 -10.002 41.495 -6.268 -0.261 -2.289 C22  52V 15 
52V C23  C23  C 0 1 Y N N -34.947 -9.752  40.970 -5.367 0.774  -2.462 C23  52V 16 
52V C24  C24  C 0 1 Y N N -33.998 -10.778 40.862 -4.244 0.855  -1.664 C24  52V 17 
52V C27  C27  C 0 1 N N N -32.656 -10.375 40.270 -3.263 1.983  -1.853 C27  52V 18 
52V C25  C25  C 0 1 Y N N -34.276 -12.100 41.281 -4.021 -0.106 -0.680 C25  52V 19 
52V C19  C19  C 0 1 Y N N -32.040 -13.072 41.764 -1.836 -1.014 0.107  C19  52V 20 
52V O17  O17  O 0 1 N N N -32.909 -16.478 39.497 -1.367 2.153  2.721  O17  52V 21 
52V C11  C11  C 0 1 N N N -29.122 -12.771 41.953 1.623  -1.412 0.445  C11  52V 22 
52V C10  C10  C 0 1 N N N -28.662 -11.661 41.701 2.648  -0.932 0.133  C10  52V 23 
52V C5   C5   C 0 1 Y N N -28.582 -9.217  41.983 4.005  1.024  -0.485 C5   52V 24 
52V C8   C8   C 0 1 N N N -29.726 -9.261  42.994 2.801  1.919  -0.345 C8   52V 25 
52V N4   N4   N 0 1 Y N N -28.031 -8.033  41.647 5.178  1.527  -0.834 N4   52V 26 
52V N7   N7   N 0 1 N N N -26.483 -6.811  40.426 7.450  1.323  -1.327 N7   52V 27 
52V N2   N2   N 0 1 Y N N -26.567 -9.077  40.176 6.193  -0.555 -0.746 N2   52V 28 
52V N9   N9   N 0 1 N N N -26.562 -11.368 39.873 5.006  -2.503 -0.163 N9   52V 29 
52V H2   H2   H 0 1 N N N -34.800 -16.931 40.242 -2.151 3.910  3.473  H2   52V 30 
52V H2A  H2A  H 0 1 N N N -34.774 -16.061 38.671 -2.501 3.587  1.758  H2A  52V 31 
52V H2B  H2B  H 0 1 N N N -34.329 -17.801 38.743 -3.345 2.667  3.027  H2B  52V 32 
52V H12  H12  H 0 1 N N N -29.062 -14.888 41.856 0.045  -2.758 0.095  H12  52V 33 
52V H13  H13  H 0 1 N N N -29.845 -15.376 43.975 -0.468 -3.129 2.493  H13  52V 34 
52V H13A H13A H 0 0 N N N -28.949 -13.845 44.258 1.246  -3.460 2.148  H13A 52V 35 
52V H13B H13B H 0 0 N N N -30.740 -13.826 44.124 0.776  -1.939 2.943  H13B 52V 36 
52V H15  H15  H 0 1 N N N -30.715 -16.031 40.725 0.320  0.177  2.410  H15  52V 37 
52V H17  H17  H 0 1 N N N -34.574 -14.371 39.902 -3.409 1.814  1.118  H17  52V 38 
52V H26  H26  H 0 1 N N N -36.121 -14.377 41.428 -4.111 -3.017 0.119  H26  52V 39 
52V H26A H26A H 0 0 N N N -35.263 -14.101 42.981 -4.141 -1.755 1.374  H26A 52V 40 
52V H26B H26B H 0 0 N N N -36.979 -13.603 42.803 -5.648 -2.576 0.900  H26B 52V 41 
52V H21  H21  H 0 1 N N N -37.477 -11.511 42.322 -6.755 -2.027 -1.189 H21  52V 42 
52V H22  H22  H 0 1 N N N -36.937 -9.212  41.581 -7.146 -0.320 -2.916 H22  52V 43 
52V H23  H23  H 0 1 N N N -34.695 -8.755  40.640 -5.543 1.521  -3.222 H23  52V 44 
52V H27  H27  H 0 1 N N N -32.751 -10.278 39.178 -3.549 2.823  -1.220 H27  52V 45 
52V H27A H27A H 0 0 N N N -32.341 -9.412  40.698 -2.263 1.646  -1.578 H27A 52V 46 
52V H27B H27B H 0 0 N N N -31.906 -11.144 40.506 -3.266 2.297  -2.897 H27B 52V 47 
52V H19  H19  H 0 1 N N N -31.782 -12.207 42.357 -1.954 -1.841 -0.577 H19  52V 48 
52V H8   H8   H 0 1 N N N -29.314 -9.272  44.014 2.740  2.289  0.678  H8   52V 49 
52V H8A  H8A  H 0 1 N N N -30.363 -8.374  42.865 2.893  2.762  -1.031 H8A  52V 50 
52V H8B  H8B  H 0 1 N N N -30.324 -10.170 42.831 1.899  1.355  -0.582 H8B  52V 51 
52V HN7  HN7  H 0 1 N N N -26.346 -6.260  41.249 7.505  2.278  -1.488 HN7  52V 52 
52V HN7A HN7A H 0 0 N N N -25.602 -6.970  39.981 8.240  0.769  -1.424 HN7A 52V 53 
52V HN9  HN9  H 0 1 N N N -26.436 -11.180 38.899 4.171  -2.921 0.099  HN9  52V 54 
52V HN9A HN9A H 0 0 N N N -25.680 -11.596 40.285 5.807  -3.041 -0.264 HN9A 52V 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
52V N9  C1   SING N N 1  
52V N2  C1   DOUB Y N 2  
52V C1  C6   SING Y N 3  
52V C2  O17  SING N N 4  
52V C2  H2   SING N N 5  
52V C2  H2A  SING N N 6  
52V C2  H2B  SING N N 7  
52V N2  C3   SING Y N 8  
52V N7  C3   SING N N 9  
52V C3  N4   DOUB Y N 10 
52V C6  C10  SING N N 11 
52V C6  C5   DOUB Y N 12 
52V C14 C12  SING N N 13 
52V C11 C12  SING N N 14 
52V C12 C13  SING N N 15 
52V C12 H12  SING N N 16 
52V C13 H13  SING N N 17 
52V C13 H13A SING N N 18 
52V C13 H13B SING N N 19 
52V C15 C14  DOUB Y N 20 
52V C14 C19  SING Y N 21 
52V C16 C15  SING Y N 22 
52V C15 H15  SING N N 23 
52V O17 C16  SING N N 24 
52V C16 C17  DOUB Y N 25 
52V C17 C18  SING Y N 26 
52V C17 H17  SING N N 27 
52V C18 C25  SING Y N 28 
52V C18 C19  DOUB Y N 29 
52V C20 C26  SING N N 30 
52V C26 H26  SING N N 31 
52V C26 H26A SING N N 32 
52V C26 H26B SING N N 33 
52V C25 C20  DOUB Y N 34 
52V C20 C21  SING Y N 35 
52V C22 C21  DOUB Y N 36 
52V C21 H21  SING N N 37 
52V C23 C22  SING Y N 38 
52V C22 H22  SING N N 39 
52V C24 C23  DOUB Y N 40 
52V C23 H23  SING N N 41 
52V C27 C24  SING N N 42 
52V C24 C25  SING Y N 43 
52V C27 H27  SING N N 44 
52V C27 H27A SING N N 45 
52V C27 H27B SING N N 46 
52V C19 H19  SING N N 47 
52V C10 C11  TRIP N N 48 
52V N4  C5   SING Y N 49 
52V C5  C8   SING N N 50 
52V C8  H8   SING N N 51 
52V C8  H8A  SING N N 52 
52V C8  H8B  SING N N 53 
52V N7  HN7  SING N N 54 
52V N7  HN7A SING N N 55 
52V N9  HN9  SING N N 56 
52V N9  HN9A SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
52V SMILES           ACDLabs              10.04 "C(#CC(c2cc(c1c(cccc1C)C)cc(OC)c2)C)c3c(nc(nc3C)N)N"                                                                                                       
52V SMILES_CANONICAL CACTVS               3.341 "COc1cc(cc(c1)c2c(C)cccc2C)[C@H](C)C#Cc3c(C)nc(N)nc3N"                                                                                                     
52V SMILES           CACTVS               3.341 "COc1cc(cc(c1)c2c(C)cccc2C)[CH](C)C#Cc3c(C)nc(N)nc3N"                                                                                                      
52V SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cccc(c1c2cc(cc(c2)OC)[C@H](C)C#Cc3c(nc(nc3N)N)C)C"                                                                                                     
52V SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1cccc(c1c2cc(cc(c2)OC)C(C)C#Cc3c(nc(nc3N)N)C)C"                                                                                                         
52V InChI            InChI                1.03  "InChI=1S/C24H26N4O/c1-14(9-10-21-17(4)27-24(26)28-23(21)25)18-11-19(13-20(12-18)29-5)22-15(2)7-6-8-16(22)3/h6-8,11-14H,1-5H3,(H4,25,26,27,28)/t14-/m1/s1" 
52V InChIKey         InChI                1.03  XZXVRKHUCSXVBM-CQSZACIVSA-N                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
52V "SYSTEMATIC NAME" ACDLabs              10.04 "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
52V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(3S)-3-[3-(2,6-dimethylphenyl)-5-methoxy-phenyl]but-1-ynyl]-6-methyl-pyrimidine-2,4-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
52V "Create component"     2008-10-31 RCSB 
52V "Modify aromatic_flag" 2011-06-04 RCSB 
52V "Modify descriptor"    2011-06-04 RCSB 
# 
