data_7RV
#

_chem_comp.id                                   7RV
_chem_comp.name                                 "N-{[4-(4-phenylpiperazin-1-yl)oxan-4-yl]methyl}-2-(phenylsulfanyl)pyridine-3-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H32 N4 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "antagonist JNJ47965567"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-12-02
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       488.644
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7RV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5U1X
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7RV  C10  C1   C  0  1  N  N  N  -3.609  -14.149  -11.811   1.758  -2.982   1.353  C10  7RV   1  
7RV  C13  C2   C  0  1  N  N  N  -4.507   -9.821  -13.570   3.507   0.898  -1.068  C13  7RV   2  
7RV  C15  C3   C  0  1  N  N  N  -6.090  -10.882  -12.285   4.689   0.030   0.857  C15  7RV   3  
7RV  C17  C4   C  0  1  Y  N  N  -6.024   -8.397  -12.201   5.533   1.878  -0.350  C17  7RV   4  
7RV  C20  C5   C  0  1  Y  N  N  -7.309   -5.979  -11.792   6.933   4.254  -0.131  C20  7RV   5  
7RV  C21  C6   C  0  1  Y  N  N  -7.848   -7.159  -11.259   7.505   3.074   0.307  C21  7RV   6  
7RV  C22  C7   C  0  1  Y  N  N  -7.198   -8.367  -11.468   6.806   1.887   0.205  C22  7RV   7  
7RV  C24  C8   C  0  1  Y  N  N  -2.242  -18.409  -14.645  -1.459   0.928   1.748  C24  7RV   8  
7RV  C26  C9   C  0  1  Y  N  N  -1.855  -20.100  -16.353  -3.462   2.174   2.141  C26  7RV   9  
7RV  C28  C10  C  0  1  Y  N  N  -3.207  -18.299  -16.879  -3.450   0.643   0.412  C28  7RV  10  
7RV  O01  O1   O  0  1  N  N  N  -4.918  -16.258  -15.376  -2.011  -1.283  -1.029  O01  7RV  11  
7RV  C02  C11  C  0  1  N  N  N  -3.739  -16.402  -15.190  -1.428  -0.735  -0.113  C02  7RV  12  
7RV  N03  N1   N  0  1  N  N  N  -2.991  -15.278  -14.584  -0.152  -1.064   0.166  N03  7RV  13  
7RV  C04  C12  C  0  1  N  N  N  -3.817  -14.112  -14.302   0.534  -2.083  -0.634  C04  7RV  14  
7RV  C05  C13  C  0  1  N  N  N  -3.339  -13.317  -13.049   1.915  -2.356  -0.037  C05  7RV  15  
7RV  C06  C14  C  0  1  N  N  N  -1.884  -12.981  -13.233   2.681  -3.329  -0.939  C06  7RV  16  
7RV  C07  C15  C  0  1  N  N  N  -1.118  -12.624  -11.954   1.934  -4.665  -0.985  C07  7RV  17  
7RV  O08  O2   O  0  1  N  N  N  -1.395  -13.567  -10.830   1.795  -5.177   0.342  O08  7RV  18  
7RV  C09  C16  C  0  1  N  N  N  -2.855  -13.691  -10.565   1.048  -4.331   1.219  C09  7RV  19  
7RV  N11  N2   N  0  1  N  N  N  -4.152  -12.150  -13.065   2.661  -1.095   0.074  N11  7RV  20  
7RV  C12  C17  C  0  1  N  N  N  -3.522  -10.994  -13.379   2.796  -0.446  -1.238  C12  7RV  21  
7RV  N14  N3   N  0  1  N  N  N  -5.350   -9.660  -12.417   4.824   0.679  -0.455  N14  7RV  22  
7RV  C16  C18  C  0  1  N  N  N  -5.167  -12.111  -12.142   3.978  -1.314   0.687  C16  7RV  23  
7RV  C18  C19  C  0  1  Y  N  N  -5.484   -7.216  -12.735   4.964   3.064  -0.795  C18  7RV  24  
7RV  C19  C20  C  0  1  Y  N  N  -6.135   -6.011  -12.525   5.666   4.249  -0.685  C19  7RV  25  
7RV  C23  C21  C  0  1  Y  N  N  -3.031  -17.750  -15.574  -2.118   0.289   0.692  C23  7RV  26  
7RV  C25  C22  C  0  1  Y  N  N  -1.640  -19.614  -15.050  -2.152   1.879   2.477  C25  7RV  27  
7RV  N27  N4   N  0  1  Y  N  N  -2.621  -19.443  -17.229  -4.064   1.565   1.139  N27  7RV  28  
7RV  S29  S1   S  0  1  N  N  N  -4.260  -17.418  -18.127  -4.306  -0.143  -0.912  S29  7RV  29  
7RV  C30  C23  C  0  1  Y  N  N  -3.815  -18.079  -19.791  -5.912   0.548  -0.691  C30  7RV  30  
7RV  C31  C24  C  0  1  Y  N  N  -2.667  -17.608  -20.434  -6.289   1.676  -1.408  C31  7RV  31  
7RV  C32  C25  C  0  1  Y  N  N  -2.327  -18.108  -21.684  -7.548   2.215  -1.233  C32  7RV  32  
7RV  C33  C26  C  0  1  Y  N  N  -3.138  -19.081  -22.279  -8.433   1.633  -0.344  C33  7RV  33  
7RV  C34  C27  C  0  1  Y  N  N  -4.280  -19.554  -21.639  -8.061   0.510   0.372  C34  7RV  34  
7RV  C35  C28  C  0  1  Y  N  N  -4.624  -19.053  -20.385  -6.806  -0.038   0.196  C35  7RV  35  
7RV  H1   H1   H  0  1  N  N  N  -4.687  -14.106  -11.596   2.741  -3.131   1.798  H1   7RV  36  
7RV  H2   H2   H  0  1  N  N  N  -3.319  -15.188  -12.025   1.167  -2.320   1.986  H2   7RV  37  
7RV  H3   H3   H  0  1  N  N  N  -3.936   -8.895  -13.730   3.633   1.368  -2.044  H3   7RV  38  
7RV  H4   H4   H  0  1  N  N  N  -5.136  -10.020  -14.450   2.910   1.547  -0.427  H4   7RV  39  
7RV  H5   H5   H  0  1  N  N  N  -6.730  -10.814  -11.393   5.678  -0.133   1.285  H5   7RV  40  
7RV  H6   H6   H  0  1  N  N  N  -6.719  -11.013  -13.178   4.107   0.669   1.521  H6   7RV  41  
7RV  H7   H7   H  0  1  N  N  N  -7.814   -5.038  -11.629   7.481   5.181  -0.050  H7   7RV  42  
7RV  H8   H8   H  0  1  N  N  N  -8.765   -7.128  -10.689   8.499   3.080   0.730  H8   7RV  43  
7RV  H9   H9   H  0  1  N  N  N  -7.606   -9.280  -11.061   7.250   0.967   0.557  H9   7RV  44  
7RV  H10  H10  H  0  1  N  N  N  -2.095  -18.014  -13.651  -0.436   0.682   1.992  H10  7RV  45  
7RV  H11  H11  H  0  1  N  N  N  -1.389  -21.027  -16.653  -4.001   2.916   2.711  H11  7RV  46  
7RV  H12  H12  H  0  1  N  N  N  -2.011  -15.315  -14.387   0.313  -0.628   0.896  H12  7RV  47  
7RV  H13  H13  H  0  1  N  N  N  -3.788  -13.442  -15.174  -0.052  -3.002  -0.631  H13  7RV  48  
7RV  H14  H14  H  0  1  N  N  N  -4.851  -14.447  -14.131   0.645  -1.726  -1.658  H14  7RV  49  
7RV  H15  H15  H  0  1  N  N  N  -1.391  -13.852  -13.690   2.749  -2.915  -1.945  H15  7RV  50  
7RV  H16  H16  H  0  1  N  N  N  -1.819  -12.122  -13.917   3.683  -3.485  -0.539  H16  7RV  51  
7RV  H17  H17  H  0  1  N  N  N  -0.040  -12.645  -12.173   0.947  -4.515  -1.422  H17  7RV  52  
7RV  H18  H18  H  0  1  N  N  N  -1.409  -11.610  -11.642   2.497  -5.375  -1.591  H18  7RV  53  
7RV  H19  H19  H  0  1  N  N  N  -3.246  -12.713  -10.249   0.971  -4.801   2.199  H19  7RV  54  
7RV  H20  H20  H  0  1  N  N  N  -3.012  -14.425   -9.761   0.049  -4.177   0.810  H20  7RV  55  
7RV  H22  H22  H  0  1  N  N  N  -2.961  -11.140  -14.314   1.807  -0.283  -1.666  H22  7RV  56  
7RV  H23  H23  H  0  1  N  N  N  -2.824  -10.741  -12.568   3.379  -1.085  -1.901  H23  7RV  57  
7RV  H24  H24  H  0  1  N  N  N  -5.777  -13.019  -12.258   4.575  -1.963   0.046  H24  7RV  58  
7RV  H25  H25  H  0  1  N  N  N  -4.721  -12.095  -11.136   3.852  -1.784   1.663  H25  7RV  59  
7RV  H26  H26  H  0  1  N  N  N  -4.568   -7.247  -13.306   3.975   3.060  -1.228  H26  7RV  60  
7RV  H27  H27  H  0  1  N  N  N  -5.727   -5.098  -12.933   5.224   5.172  -1.031  H27  7RV  61  
7RV  H28  H28  H  0  1  N  N  N  -1.015  -20.165  -14.363  -1.674   2.387   3.301  H28  7RV  62  
7RV  H29  H29  H  0  1  N  N  N  -2.048  -16.860  -19.962  -5.598   2.132  -2.102  H29  7RV  63  
7RV  H30  H30  H  0  1  N  N  N  -1.444  -17.749  -22.193  -7.842   3.093  -1.790  H30  7RV  64  
7RV  H31  H31  H  0  1  N  N  N  -2.873  -19.471  -23.251  -9.417   2.056  -0.208  H31  7RV  65  
7RV  H32  H32  H  0  1  N  N  N  -4.896  -20.305  -22.112  -8.755   0.058   1.065  H32  7RV  66  
7RV  H33  H33  H  0  1  N  N  N  -5.506  -19.413  -19.877  -6.516  -0.916   0.755  H33  7RV  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7RV  C33  C32  DOUB  Y  N   1  
7RV  C33  C34  SING  Y  N   2  
7RV  C32  C31  SING  Y  N   3  
7RV  C34  C35  DOUB  Y  N   4  
7RV  C31  C30  DOUB  Y  N   5  
7RV  C35  C30  SING  Y  N   6  
7RV  C30  S29  SING  N  N   7  
7RV  S29  C28  SING  N  N   8  
7RV  N27  C28  DOUB  Y  N   9  
7RV  N27  C26  SING  Y  N  10  
7RV  C28  C23  SING  Y  N  11  
7RV  C26  C25  DOUB  Y  N  12  
7RV  C23  C02  SING  N  N  13  
7RV  C23  C24  DOUB  Y  N  14  
7RV  O01  C02  DOUB  N  N  15  
7RV  C02  N03  SING  N  N  16  
7RV  C25  C24  SING  Y  N  17  
7RV  N03  C04  SING  N  N  18  
7RV  C04  C05  SING  N  N  19  
7RV  C13  C12  SING  N  N  20  
7RV  C13  N14  SING  N  N  21  
7RV  C12  N11  SING  N  N  22  
7RV  C06  C05  SING  N  N  23  
7RV  C06  C07  SING  N  N  24  
7RV  N11  C05  SING  N  N  25  
7RV  N11  C16  SING  N  N  26  
7RV  C05  C10  SING  N  N  27  
7RV  C18  C19  DOUB  Y  N  28  
7RV  C18  C17  SING  Y  N  29  
7RV  C19  C20  SING  Y  N  30  
7RV  N14  C15  SING  N  N  31  
7RV  N14  C17  SING  N  N  32  
7RV  C15  C16  SING  N  N  33  
7RV  C17  C22  DOUB  Y  N  34  
7RV  C07  O08  SING  N  N  35  
7RV  C10  C09  SING  N  N  36  
7RV  C20  C21  DOUB  Y  N  37  
7RV  C22  C21  SING  Y  N  38  
7RV  O08  C09  SING  N  N  39  
7RV  C10  H1   SING  N  N  40  
7RV  C10  H2   SING  N  N  41  
7RV  C13  H3   SING  N  N  42  
7RV  C13  H4   SING  N  N  43  
7RV  C15  H5   SING  N  N  44  
7RV  C15  H6   SING  N  N  45  
7RV  C20  H7   SING  N  N  46  
7RV  C21  H8   SING  N  N  47  
7RV  C22  H9   SING  N  N  48  
7RV  C24  H10  SING  N  N  49  
7RV  C26  H11  SING  N  N  50  
7RV  N03  H12  SING  N  N  51  
7RV  C04  H13  SING  N  N  52  
7RV  C04  H14  SING  N  N  53  
7RV  C06  H15  SING  N  N  54  
7RV  C06  H16  SING  N  N  55  
7RV  C07  H17  SING  N  N  56  
7RV  C07  H18  SING  N  N  57  
7RV  C09  H19  SING  N  N  58  
7RV  C09  H20  SING  N  N  59  
7RV  C12  H22  SING  N  N  60  
7RV  C12  H23  SING  N  N  61  
7RV  C16  H24  SING  N  N  62  
7RV  C16  H25  SING  N  N  63  
7RV  C18  H26  SING  N  N  64  
7RV  C19  H27  SING  N  N  65  
7RV  C25  H28  SING  N  N  66  
7RV  C31  H29  SING  N  N  67  
7RV  C32  H30  SING  N  N  68  
7RV  C33  H31  SING  N  N  69  
7RV  C34  H32  SING  N  N  70  
7RV  C35  H33  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7RV  SMILES            ACDLabs               12.01  "C1COCCC1(CNC(=O)c2cccnc2Sc3ccccc3)N4CCN(CC4)c5ccccc5"  
7RV  InChI             InChI                 1.03   "InChI=1S/C28H32N4O2S/c33-26(25-12-7-15-29-27(25)35-24-10-5-2-6-11-24)30-22-28(13-20-34-21-14-28)32-18-16-31(17-19-32)23-8-3-1-4-9-23/h1-12,15H,13-14,16-22H2,(H,30,33)"  
7RV  InChIKey          InChI                 1.03   XREFXUCWSYMIOG-UHFFFAOYSA-N  
7RV  SMILES_CANONICAL  CACTVS                3.385  "O=C(NCC1(CCOCC1)N2CCN(CC2)c3ccccc3)c4cccnc4Sc5ccccc5"  
7RV  SMILES            CACTVS                3.385  "O=C(NCC1(CCOCC1)N2CCN(CC2)c3ccccc3)c4cccnc4Sc5ccccc5"  
7RV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)N2CCN(CC2)C3(CCOCC3)CNC(=O)c4cccnc4Sc5ccccc5"  
7RV  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)N2CCN(CC2)C3(CCOCC3)CNC(=O)c4cccnc4Sc5ccccc5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7RV  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{[4-(4-phenylpiperazin-1-yl)oxan-4-yl]methyl}-2-(phenylsulfanyl)pyridine-3-carboxamide"  
7RV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[[4-(4-phenylpiperazin-1-yl)oxan-4-yl]methyl]-2-phenylsulfanyl-pyridine-3-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7RV  "Create component"  2016-12-02  RCSB  
7RV  "Initial release"   2017-01-04  RCSB  
7RV  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     7RV
_pdbx_chem_comp_synonyms.name        "antagonist JNJ47965567"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
