data_B5V
# 
_chem_comp.id                                    B5V 
_chem_comp.name                                  "9-(5-O-{(S)-hydroxy[(2-hydroxybenzene-1-carbonyl)oxy]phosphoryl}-alpha-L-lyxofuranosyl)-9H-purin-6-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H18 N5 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-01 
_chem_comp.pdbx_modified_date                    2018-05-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        467.327 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B5V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WM3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B5V C13 C1  C 0 1 N N S -13.549 59.739 1.090  1.193  1.648  -0.829 C13 B5V 1  
B5V C20 C2  C 0 1 Y N N -8.571  57.837 2.525  -5.006 -2.379 -0.317 C20 B5V 2  
B5V C21 C3  C 0 1 Y N N -7.331  57.563 1.986  -5.769 -3.522 -0.425 C21 B5V 3  
B5V C22 C4  C 0 1 Y N N -7.105  56.336 1.381  -7.137 -3.473 -0.208 C22 B5V 4  
B5V C24 C5  C 0 1 Y N N -9.344  55.669 1.857  -6.997 -1.121 0.238  C24 B5V 5  
B5V C02 C6  C 0 1 Y N N -8.402  63.682 1.250  6.453  -2.668 0.071  C02 B5V 6  
B5V C03 C7  C 0 1 Y N N -9.423  62.688 1.375  5.234  -2.019 -0.182 C03 B5V 7  
B5V C05 C8  C 0 1 Y N N -10.660 60.914 1.588  3.258  -1.356 -0.781 C05 B5V 8  
B5V C07 C9  C 0 1 Y N N -10.727 63.098 1.385  5.041  -0.735 0.356  C07 B5V 9  
B5V C09 C10 C 0 1 Y N N -10.025 65.329 1.151  7.139  -0.832 1.290  C09 B5V 10 
B5V C11 C11 C 0 1 N N R -12.983 62.006 1.541  3.136  0.930  0.279  C11 B5V 11 
B5V C14 C12 C 0 1 N N N -14.553 58.704 1.606  -0.163 2.215  -0.405 C14 B5V 12 
B5V C18 C13 C 0 1 N N N -10.961 57.188 3.052  -4.803 0.059  0.141  C18 B5V 13 
B5V C19 C14 C 0 1 Y N N -9.576  56.886 2.467  -5.613 -1.166 0.019  C19 B5V 14 
B5V C23 C15 C 0 1 Y N N -8.108  55.384 1.313  -7.750 -2.280 0.119  C23 B5V 15 
B5V C29 C16 C 0 1 N N S -14.006 60.717 -0.064 2.234  2.787  -0.965 C29 B5V 16 
B5V C31 C17 C 0 1 N N R -13.888 62.107 0.536  3.557  2.006  -0.745 C31 B5V 17 
B5V N01 N1  N 0 1 N N N -7.002  63.306 1.241  6.700  -3.933 -0.433 N01 B5V 18 
B5V N04 N2  N 0 1 Y N N -9.392  61.333 1.499  4.108  -2.338 -0.864 N04 B5V 19 
B5V N06 N3  N 0 1 Y N N -11.504 61.977 1.517  3.787  -0.343 -0.038 N06 B5V 20 
B5V N08 N4  N 0 1 Y N N -10.994 64.431 1.275  6.012  -0.185 1.079  N08 B5V 21 
B5V N10 N5  N 0 1 Y N N -8.749  64.965 1.138  7.367  -2.037 0.802  N10 B5V 22 
B5V O12 O1  O 0 1 N N N -13.090 60.490 2.070  1.714  0.784  0.193  O12 B5V 23 
B5V O15 O2  O 0 1 N N N -13.970 58.248 2.802  -1.121 1.157  -0.334 O15 B5V 24 
B5V O17 O3  O 0 1 N N N -12.012 56.281 2.813  -3.473 0.012  -0.070 O17 B5V 25 
B5V O25 O4  O 0 1 N N N -10.361 54.716 1.801  -7.597 0.051  0.565  O25 B5V 26 
B5V O26 O5  O 0 1 N N N -11.139 58.182 3.681  -5.334 1.113  0.433  O26 B5V 27 
B5V O27 O6  O 0 1 N N N -14.495 55.746 2.313  -3.257 2.418  -0.799 O27 B5V 28 
B5V O28 O7  O 0 1 N N N -13.812 56.459 4.613  -2.730 1.890  1.612  O28 B5V 29 
B5V O30 O8  O 0 1 N N N -15.283 60.461 -0.586 2.047  3.779  0.047  O30 B5V 30 
B5V O32 O9  O 0 1 N N N -15.161 62.561 0.930  4.567  2.858  -0.201 O32 B5V 31 
B5V P16 P1  P 0 1 N N N -13.602 56.663 3.124  -2.658 1.392  0.083  P16 B5V 32 
B5V H1  H1  H 0 1 N N N -12.712 59.163 0.669  1.098  1.106  -1.770 H1  B5V 33 
B5V H2  H2  H 0 1 N N N -8.758  58.793 2.992  -3.941 -2.422 -0.487 H2  B5V 34 
B5V H3  H3  H 0 1 N N N -6.542  58.299 2.035  -5.299 -4.460 -0.681 H3  B5V 35 
B5V H4  H4  H 0 1 N N N -6.135  56.120 0.958  -7.727 -4.373 -0.296 H4  B5V 36 
B5V H5  H5  H 0 1 N N N -10.967 59.885 1.700  2.277  -1.346 -1.234 H5  B5V 37 
B5V H6  H6  H 0 1 N N N -10.279 66.375 1.059  7.907  -0.357 1.882  H6  B5V 38 
B5V H7  H7  H 0 1 N N N -13.293 62.648 2.379  3.415  1.247  1.284  H7  B5V 39 
B5V H8  H8  H 0 1 N N N -15.532 59.168 1.798  -0.070 2.687  0.573  H8  B5V 40 
B5V H9  H9  H 0 1 N N N -14.672 57.880 0.887  -0.492 2.954  -1.135 H9  B5V 41 
B5V H10 H10 H 0 1 N N N -7.925  54.430 0.840  -8.816 -2.250 0.286  H10 B5V 42 
B5V H11 H11 H 0 1 N N N -13.261 60.635 -0.870 2.201  3.233  -1.960 H11 B5V 43 
B5V H12 H12 H 0 1 N N N -13.498 62.773 -0.248 3.897  1.549  -1.674 H12 B5V 44 
B5V H13 H13 H 0 1 N N N -6.437  64.125 1.144  6.027  -4.382 -0.968 H13 B5V 45 
B5V H14 H14 H 0 1 N N N -6.775  62.844 2.099  7.546  -4.371 -0.251 H14 B5V 46 
B5V H15 H15 H 0 1 N N N -11.143 55.062 2.215  -7.902 0.563  -0.197 H15 B5V 47 
B5V H16 H16 H 0 1 N N N -14.470 55.788 4.751  -2.354 1.265  2.247  H16 B5V 48 
B5V H17 H17 H 0 1 N N N -15.307 59.583 -0.948 2.738  4.455  0.068  H17 B5V 49 
B5V H18 H18 H 0 1 N N N -15.085 63.431 1.305  4.803  3.602  -0.772 H18 B5V 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B5V O30 C29 SING N N 1  
B5V C29 C31 SING N N 2  
B5V C29 C13 SING N N 3  
B5V C31 O32 SING N N 4  
B5V C31 C11 SING N N 5  
B5V C13 C14 SING N N 6  
B5V C13 O12 SING N N 7  
B5V N10 C09 DOUB Y N 8  
B5V N10 C02 SING Y N 9  
B5V C09 N08 SING Y N 10 
B5V N01 C02 SING N N 11 
B5V C02 C03 DOUB Y N 12 
B5V N08 C07 DOUB Y N 13 
B5V C23 C22 DOUB Y N 14 
B5V C23 C24 SING Y N 15 
B5V C03 C07 SING Y N 16 
B5V C03 N04 SING Y N 17 
B5V C22 C21 SING Y N 18 
B5V C07 N06 SING Y N 19 
B5V N04 C05 DOUB Y N 20 
B5V N06 C11 SING N N 21 
B5V N06 C05 SING Y N 22 
B5V C11 O12 SING N N 23 
B5V C14 O15 SING N N 24 
B5V O25 C24 SING N N 25 
B5V C24 C19 DOUB Y N 26 
B5V C21 C20 DOUB Y N 27 
B5V O27 P16 DOUB N N 28 
B5V C19 C20 SING Y N 29 
B5V C19 C18 SING N N 30 
B5V O15 P16 SING N N 31 
B5V O17 C18 SING N N 32 
B5V O17 P16 SING N N 33 
B5V C18 O26 DOUB N N 34 
B5V P16 O28 SING N N 35 
B5V C13 H1  SING N N 36 
B5V C20 H2  SING N N 37 
B5V C21 H3  SING N N 38 
B5V C22 H4  SING N N 39 
B5V C05 H5  SING N N 40 
B5V C09 H6  SING N N 41 
B5V C11 H7  SING N N 42 
B5V C14 H8  SING N N 43 
B5V C14 H9  SING N N 44 
B5V C23 H10 SING N N 45 
B5V C29 H11 SING N N 46 
B5V C31 H12 SING N N 47 
B5V N01 H13 SING N N 48 
B5V N01 H14 SING N N 49 
B5V O25 H15 SING N N 50 
B5V O28 H16 SING N N 51 
B5V O30 H17 SING N N 52 
B5V O32 H18 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B5V SMILES           ACDLabs              12.01 "C2(COP(OC(=O)c1ccccc1O)(=O)O)OC(C(C2O)O)n4cnc3c(N)ncnc34"                                                                                                                                              
B5V InChI            InChI                1.03  "InChI=1S/C17H18N5O9P/c18-14-11-15(20-6-19-14)22(7-21-11)16-13(25)12(24)10(30-16)5-29-32(27,28)31-17(26)8-3-1-2-4-9(8)23/h1-4,6-7,10,12-13,16,23-25H,5H2,(H,27,28)(H2,18,19,20)/t10-,12+,13+,16+/m0/s1" 
B5V InChIKey         InChI                1.03  AESBJQJIAHTCHE-MZXFEWSRSA-N                                                                                                                                                                             
B5V SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H](CO[P](O)(=O)OC(=O)c4ccccc4O)[C@@H](O)[C@H]3O"                                                                                                                           
B5V SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)c4ccccc4O)[CH](O)[CH]3O"                                                                                                                                  
B5V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)C(=O)OP(=O)(O)OC[C@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O"                                                                                                                           
B5V SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)C(=O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)O"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B5V "SYSTEMATIC NAME" ACDLabs              12.01 "9-(5-O-{(S)-hydroxy[(2-hydroxybenzene-1-carbonyl)oxy]phosphoryl}-alpha-L-lyxofuranosyl)-9H-purin-6-amine"                       
B5V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] 2-oxidanylbenzoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B5V "Create component" 2017-08-01 RCSB 
B5V "Initial release"  2018-05-23 RCSB 
# 
