data_H2V
# 
_chem_comp.id                                    H2V 
_chem_comp.name                                  "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] aminoethanethioate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H26 N3 O8 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "S-glycyl-4'-phosphopantetheine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-09-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        415.400 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H2V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4H2V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H2V C    C    C 0 1 N N N N N N 93.452 34.873 8.314  -5.540 -1.411 -2.004 C    H2V 1  
H2V N    N    N 0 1 N N N N N N 89.108 36.631 9.495  -1.421 -1.763 -0.262 N    H2V 2  
H2V O    O    O 0 1 N N N N N N 91.590 34.647 6.389  -5.158 1.070  -0.596 O    H2V 3  
H2V P    P    P 0 1 N N N N N N 92.156 33.789 5.177  -5.641 2.321  0.294  P    H2V 4  
H2V S    S    S 0 1 N N N N N N 85.232 37.179 16.135 7.175  0.301  0.885  S    H2V 5  
H2V C1   C1   C 0 1 N N N N N N 92.484 36.041 8.101  -4.304 -1.122 -1.150 C1   H2V 6  
H2V N1   N1   N 0 1 N N N N N N 87.989 35.951 13.442 3.333  -0.563 -0.061 N1   H2V 7  
H2V O1   O1   O 0 1 N N N N N N 91.581 32.367 5.317  -6.950 1.908  1.136  O1   H2V 8  
H2V C2   C2   C 0 1 N N N N N N 93.251 37.353 8.278  -3.214 -0.500 -2.024 C2   H2V 9  
H2V N2   N2   N 0 1 N N N N N N 84.105 39.923 17.942 10.477 1.430  -1.160 N2   H2V 10 
H2V O2   O2   O 0 1 N N N N N N 91.724 34.457 3.867  -4.558 2.711  1.225  O2   H2V 11 
H2V C3   C3   C 0 1 N N N N N N 91.870 36.022 6.688  -4.676 -0.149 -0.029 C3   H2V 12 
H2V O3   O3   O 0 1 N N N N N N 93.755 33.760 5.327  -5.993 3.562  -0.669 O3   H2V 13 
H2V C4   C4   C 0 1 N N S N N N 91.408 35.953 9.213  -3.788 -2.428 -0.542 C4   H2V 14 
H2V O4   O4   O 0 1 N N N N N N 91.719 34.808 9.994  -4.812 -3.016 0.262  O4   H2V 15 
H2V C5   C5   C 0 1 N N N N N N 89.920 35.844 8.798  -2.580 -2.140 0.313  C5   H2V 16 
H2V O5   O5   O 0 1 N N N N N N 89.505 35.025 7.980  -2.651 -2.249 1.519  O5   H2V 17 
H2V C6   C6   C 0 1 N N N N N N 87.733 36.253 9.771  -0.225 -1.566 0.560  C6   H2V 18 
H2V O6   O6   O 0 1 N N N N N N 87.560 37.703 12.106 2.121  -1.116 1.713  O6   H2V 19 
H2V C7   C7   C 0 1 N N N N N N 87.639 35.539 11.095 0.943  -1.143 -0.332 C7   H2V 20 
H2V O7   O7   O 0 1 N N N N N N 85.041 39.366 14.718 7.945  0.820  -1.485 O7   H2V 21 
H2V C8   C8   C 0 1 N N N N N N 87.748 36.497 12.256 2.174  -0.940 0.514  C8   H2V 22 
H2V C9   C9   C 0 1 N N N N N N 87.515 36.562 14.674 4.529  -0.366 0.761  C9   H2V 23 
H2V C10  C10  C 0 1 N N N N N N 86.004 36.643 14.589 5.698  0.057  -0.131 C10  H2V 24 
H2V C11  C11  C 0 1 N N N N N N 84.664 38.783 15.700 8.297  0.754  -0.326 C11  H2V 25 
H2V C12  C12  C 0 1 N N N N N N 83.631 39.356 16.693 9.722  1.072  0.048  C12  H2V 26 
H2V H    H    H 0 1 N N N N N N 92.913 33.922 8.190  -5.304 -2.186 -2.734 H    H2V 27 
H2V HA   HA   H 0 1 N N N N N N 94.266 34.932 7.576  -6.353 -1.751 -1.364 HA   H2V 28 
H2V HB   HB   H 0 1 N N N N N N 93.872 34.926 9.329  -5.842 -0.502 -2.525 HB   H2V 29 
H2V HN   HN   H 0 1 N N N N N N 89.452 37.505 9.838  -1.379 -1.623 -1.221 HN   H2V 30 
H2V HN1  HN1  H 0 1 N N N N N N 88.509 35.098 13.489 3.375  -0.423 -1.020 HN1  H2V 31 
H2V HO1  HO1  H 0 1 N N N N N N 91.055 32.161 4.553  -7.701 1.640  0.589  HO1  H2V 32 
H2V H2   H2   H 0 1 N N N N N N 92.567 38.201 8.128  -3.620 0.362  -2.553 H2   H2V 33 
H2V H2A  H2A  H 0 1 N N N N N N 93.672 37.397 9.293  -2.382 -0.181 -1.395 H2A  H2V 34 
H2V H2B  H2B  H 0 1 N N N N N N 94.066 37.404 7.541  -2.862 -1.237 -2.746 H2B  H2V 35 
H2V HN2  HN2  H 0 1 N N N N N N 83.326 40.251 18.477 11.437 1.647  -0.935 HN2  H2V 36 
H2V H3   H3   H 0 1 N N N N N N 92.582 36.433 5.958  -3.796 0.057  0.580  H3   H2V 37 
H2V H3A  H3A  H 0 1 N N N N N N 90.942 36.613 6.668  -5.453 -0.593 0.594  H3A  H2V 38 
H2V HO3  HO3  H 0 1 N N N N N N 94.152 34.168 4.566  -6.292 4.353  -0.199 HO3  H2V 39 
H2V H4   H4   H 0 1 N N N N N N 91.509 36.852 9.839  -3.512 -3.116 -1.341 H4   H2V 40 
H2V HO4  HO4  H 0 1 N N N N N N 91.080 34.717 10.691 -5.107 -2.458 0.994  HO4  H2V 41 
H2V H6   H6   H 0 1 N N N N N N 87.108 37.158 9.802  -0.417 -0.788 1.300  H6   H2V 42 
H2V H6A  H6A  H 0 1 N N N N N N 87.374 35.586 8.973  0.024  -2.497 1.069  H6A  H2V 43 
H2V H7   H7   H 0 1 N N N N N N 86.671 35.019 11.152 1.135  -1.921 -1.072 H7   H2V 44 
H2V H7A  H7A  H 0 1 N N N N N N 88.454 34.804 11.162 0.694  -0.212 -0.841 H7A  H2V 45 
H2V H9   H9   H 0 1 N N N N N N 87.810 35.947 15.537 4.337  0.412  1.501  H9   H2V 46 
H2V H9A  H9A  H 0 1 N N N N N N 87.940 37.571 14.781 4.778  -1.297 1.270  H9A  H2V 47 
H2V H10  H10  H 0 1 N N N N N N 85.614 35.647 14.330 5.448  0.988  -0.640 H10  H2V 48 
H2V H10A H10A H 0 0 N N N N N N 85.736 37.359 13.798 5.890  -0.721 -0.871 H10A H2V 49 
H2V H24  H24  H 0 1 N N N N N N 84.595 39.223 18.461 10.425 0.696  -1.850 H24  H2V 50 
H2V H12  H12  H 0 1 N N N N N N 83.080 40.149 16.166 10.178 0.199  0.516  H12  H2V 51 
H2V H26  H26  H 0 1 N N N N N N 82.941 38.539 16.950 9.737  1.908  0.747  H26  H2V 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H2V C   H    SING N N 1  
H2V C   HA   SING N N 2  
H2V C   HB   SING N N 3  
H2V N   C6   SING N N 4  
H2V N   HN   SING N N 5  
H2V O   C3   SING N N 6  
H2V P   O    SING N N 7  
H2V P   O1   SING N N 8  
H2V P   O3   SING N N 9  
H2V C1  C    SING N N 10 
H2V C1  C2   SING N N 11 
H2V C1  C4   SING N N 12 
H2V N1  C9   SING N N 13 
H2V N1  HN1  SING N N 14 
H2V O1  HO1  SING N N 15 
H2V C2  H2   SING N N 16 
H2V C2  H2A  SING N N 17 
H2V C2  H2B  SING N N 18 
H2V N2  HN2  SING N N 19 
H2V O2  P    DOUB N N 20 
H2V C3  C1   SING N N 21 
H2V C3  H3   SING N N 22 
H2V C3  H3A  SING N N 23 
H2V O3  HO3  SING N N 24 
H2V C4  O4   SING N N 25 
H2V C4  H4   SING N N 26 
H2V O4  HO4  SING N N 27 
H2V C5  N    SING N N 28 
H2V C5  C4   SING N N 29 
H2V O5  C5   DOUB N N 30 
H2V C6  C7   SING N N 31 
H2V C6  H6   SING N N 32 
H2V C6  H6A  SING N N 33 
H2V O6  C8   DOUB N N 34 
H2V C7  C8   SING N N 35 
H2V C7  H7   SING N N 36 
H2V C7  H7A  SING N N 37 
H2V O7  C11  DOUB N N 38 
H2V C8  N1   SING N N 39 
H2V C9  H9   SING N N 40 
H2V C9  H9A  SING N N 41 
H2V C10 S    SING N N 42 
H2V C10 C9   SING N N 43 
H2V C10 H10  SING N N 44 
H2V C10 H10A SING N N 45 
H2V C11 S    SING N N 46 
H2V C11 C12  SING N N 47 
H2V C12 N2   SING N N 48 
H2V N2  H24  SING N N 49 
H2V C12 H12  SING N N 50 
H2V C12 H26  SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H2V SMILES           ACDLabs              12.01 "O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)O)CN"                                                                                                                
H2V InChI            InChI                1.03  "InChI=1S/C13H26N3O8PS/c1-13(2,8-24-25(21,22)23)11(19)12(20)16-4-3-9(17)15-5-6-26-10(18)7-14/h11,19H,3-8,14H2,1-2H3,(H,15,17)(H,16,20)(H2,21,22,23)/t11-/m1/s1" 
H2V InChIKey         InChI                1.03  CGYKHWUDQZHKBD-LLVKDONJSA-N                                                                                                                                     
H2V SMILES_CANONICAL CACTVS               3.370 "CC(C)(CO[P](O)(O)=O)[C@H](O)C(=O)NCCC(=O)NCCSC(=O)CN"                                                                                                          
H2V SMILES           CACTVS               3.370 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCSC(=O)CN"                                                                                                           
H2V SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)CN)O"                                                                                                                
H2V SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)CN)O"                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
H2V "SYSTEMATIC NAME" ACDLabs              12.01 "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] aminoethanethioate" 
H2V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "S-[2-[3-[(3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl)amino]propanoylamino]ethyl] 2-azanylethanethioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H2V "Create component" 2012-09-21 RCSB 
H2V "Modify synonyms"  2012-09-26 RCSB 
H2V "Initial release"  2013-03-06 RCSB 
H2V "Modify synonyms"  2021-03-01 PDBE 
H2V "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      H2V 
_pdbx_chem_comp_synonyms.name         "S-glycyl-4'-phosphopantetheine" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            H2V 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
