data_HGV
# 
_chem_comp.id                                    HGV 
_chem_comp.name                                  "2'-deoxy-5'-O-[(R)-hydroxy({(R)-hydroxy[(1S)-1-phosphonoethyl]phosphoryl}oxy)phosphoryl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H20 N5 O11 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-07-02 
_chem_comp.pdbx_modified_date                    2018-08-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.235 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HGV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6CR6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HGV PA    P1  P 0 1 N N N 4.651  5.382  15.360 1.718  -1.322 -0.880 PA    HGV 1  
HGV O1A   O1  O 0 1 N N N 3.527  5.481  16.347 1.398  -1.025 -2.430 O1A   HGV 2  
HGV O2A   O2  O 0 1 N N N 6.003  5.483  15.995 2.307  -2.673 -0.748 O2A   HGV 3  
HGV O3A   O3  O 0 1 N N N 4.601  3.984  14.571 2.760  -0.226 -0.328 O3A   HGV 4  
HGV "O5'" O4  O 0 1 N N N 4.476  6.526  14.254 0.356  -1.245 -0.026 "O5'" HGV 5  
HGV PB    P2  P 0 1 N N N 3.507  2.834  14.368 4.342  0.008  -0.516 PB    HGV 6  
HGV O2B   O5  O 0 1 N N N 3.432  2.437  12.882 4.644  0.210  -1.951 O2B   HGV 7  
HGV O1B   O6  O 0 1 N N N 2.141  3.290  14.850 5.143  -1.280 0.024  O1B   HGV 8  
HGV C3B   C1  C 0 1 N N S 3.993  1.322  15.292 4.855  1.481  0.427  C3B   HGV 9  
HGV C4B   C2  C 0 1 N N N 5.492  1.252  15.355 4.220  1.443  1.818  C4B   HGV 10 
HGV PG    P3  P 0 1 N N N 3.290  1.324  17.009 6.671  1.498  0.587  PG    HGV 11 
HGV O1G   O7  O 0 1 N N N 3.069  2.797  17.495 7.339  1.539  -0.877 O1G   HGV 12 
HGV O2G   O8  O 0 1 N N N 4.284  0.619  17.961 7.124  2.800  1.420  O2G   HGV 13 
HGV O3G   O9  O 0 1 N N N 1.952  0.618  16.991 7.115  0.279  1.298  O3G   HGV 14 
HGV "C5'" C3  C 0 1 N N N 3.184  6.581  13.594 -0.728 -2.160 -0.205 "C5'" HGV 15 
HGV "C4'" C4  C 0 1 N N R 3.348  6.662  12.124 -1.860 -1.804 0.761  "C4'" HGV 16 
HGV "O4'" O10 O 0 1 N N N 4.281  8.010  11.781 -2.469 -0.549 0.389  "O4'" HGV 17 
HGV "C1'" C5  C 0 1 N N R 4.902  7.763  10.658 -3.782 -0.530 0.975  "C1'" HGV 18 
HGV N9    N1  N 0 1 Y N N 6.328  7.775  10.924 -4.710 0.181  0.093  N9    HGV 19 
HGV C4    C6  C 0 1 Y N N 7.297  8.067  9.999  -5.878 0.796  0.469  C4    HGV 20 
HGV N3    N2  N 0 1 Y N N 7.274  8.435  8.681  -6.524 0.959  1.619  N3    HGV 21 
HGV C2    C7  C 0 1 Y N N 8.395  8.682  8.049  -7.662 1.620  1.661  C2    HGV 22 
HGV N1    N3  N 0 1 Y N N 9.578  8.587  8.661  -8.215 2.147  0.585  N1    HGV 23 
HGV C6    C8  C 0 1 Y N N 9.695  8.221  9.937  -7.642 2.036  -0.609 C6    HGV 24 
HGV N6    N4  N 0 1 N N N 10.929 8.116  10.559 -8.230 2.592  -1.732 N6    HGV 25 
HGV C5    C9  C 0 1 Y N N 8.523  7.955  10.667 -6.426 1.340  -0.705 C5    HGV 26 
HGV N7    N5  N 0 1 Y N N 8.251  7.587  11.956 -5.580 1.034  -1.719 N7    HGV 27 
HGV C8    C10 C 0 1 Y N N 6.924  7.476  12.072 -4.570 0.359  -1.252 C8    HGV 28 
HGV "C2'" C11 C 0 1 N N N 4.493  6.290  10.199 -4.232 -1.995 1.138  "C2'" HGV 29 
HGV "C3'" C12 C 0 1 N N S 4.009  5.643  11.553 -3.021 -2.824 0.639  "C3'" HGV 30 
HGV "O3'" O11 O 0 1 N N N 3.144  4.470  11.275 -2.800 -3.959 1.479  "O3'" HGV 31 
HGV H1    H1  H 0 1 N N N 3.882  5.593  17.221 1.010  -0.155 -2.591 H1    HGV 32 
HGV H2    H2  H 0 1 N N N 1.518  3.237  14.135 4.992  -1.473 0.960  H2    HGV 33 
HGV H3    H3  H 0 1 N N N 3.567  0.457  14.762 4.528  2.380  -0.097 H3    HGV 34 
HGV H4    H4  H 0 1 N N N 5.795  0.350  15.907 4.547  0.545  2.342  H4    HGV 35 
HGV H5    H5  H 0 1 N N N 5.900  1.212  14.334 4.527  2.324  2.382  H5    HGV 36 
HGV H6    H6  H 0 1 N N N 5.879  2.144  15.870 3.135  1.433  1.722  H6    HGV 37 
HGV H7    H7  H 0 1 N N N 2.147  2.936  17.675 7.091  2.313  -1.401 H7    HGV 38 
HGV H8    H8  H 0 1 N N N 3.862  -0.133 18.360 8.080  2.874  1.544  H8    HGV 39 
HGV H9    H9  H 0 1 N N N 2.637  7.468  13.945 -1.091 -2.097 -1.230 H9    HGV 40 
HGV H10   H10 H 0 1 N N N 2.612  5.675  13.844 -0.383 -3.174 -0.003 H10   HGV 41 
HGV H11   H11 H 0 1 N N N 2.366  6.820  11.654 -1.491 -1.763 1.785  H11   HGV 42 
HGV H12   H12 H 0 1 N N N 4.647  8.470  9.855  -3.746 -0.040 1.948  H12   HGV 43 
HGV H13   H13 H 0 1 N N N 8.361  8.969  7.008  -8.162 1.734  2.612  H13   HGV 44 
HGV H14   H14 H 0 1 N N N 11.652 8.351  9.909  -9.070 3.071  -1.653 H14   HGV 45 
HGV H15   H15 H 0 1 N N N 10.964 8.743  11.337 -7.802 2.504  -2.598 H15   HGV 46 
HGV H16   H16 H 0 1 N N N 6.408  7.184  12.975 -3.744 -0.009 -1.842 H16   HGV 47 
HGV H17   H17 H 0 1 N N N 3.682  6.314  9.456  -4.437 -2.216 2.185  H17   HGV 48 
HGV H18   H18 H 0 1 N N N 5.355  5.748  9.783  -5.111 -2.194 0.525  H18   HGV 49 
HGV H19   H19 H 0 1 N N N 4.889  5.335  12.136 -3.160 -3.129 -0.398 H19   HGV 50 
HGV H20   H20 H 0 1 N N N 3.322  3.787  11.910 -3.540 -4.580 1.503  H20   HGV 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HGV C2    N1    DOUB Y N 1  
HGV C2    N3    SING Y N 2  
HGV N1    C6    SING Y N 3  
HGV N3    C4    DOUB Y N 4  
HGV C6    N6    SING N N 5  
HGV C6    C5    DOUB Y N 6  
HGV C4    C5    SING Y N 7  
HGV C4    N9    SING Y N 8  
HGV "C2'" "C1'" SING N N 9  
HGV "C2'" "C3'" SING N N 10 
HGV "C1'" N9    SING N N 11 
HGV "C1'" "O4'" SING N N 12 
HGV C5    N7    SING Y N 13 
HGV N9    C8    SING Y N 14 
HGV "O3'" "C3'" SING N N 15 
HGV "C3'" "C4'" SING N N 16 
HGV "O4'" "C4'" SING N N 17 
HGV N7    C8    DOUB Y N 18 
HGV "C4'" "C5'" SING N N 19 
HGV O2B   PB    DOUB N N 20 
HGV "C5'" "O5'" SING N N 21 
HGV "O5'" PA    SING N N 22 
HGV PB    O3A   SING N N 23 
HGV PB    O1B   SING N N 24 
HGV PB    C3B   SING N N 25 
HGV O3A   PA    SING N N 26 
HGV C3B   C4B   SING N N 27 
HGV C3B   PG    SING N N 28 
HGV PA    O2A   DOUB N N 29 
HGV PA    O1A   SING N N 30 
HGV O3G   PG    DOUB N N 31 
HGV PG    O1G   SING N N 32 
HGV PG    O2G   SING N N 33 
HGV O1A   H1    SING N N 34 
HGV O1B   H2    SING N N 35 
HGV C3B   H3    SING N N 36 
HGV C4B   H4    SING N N 37 
HGV C4B   H5    SING N N 38 
HGV C4B   H6    SING N N 39 
HGV O1G   H7    SING N N 40 
HGV O2G   H8    SING N N 41 
HGV "C5'" H9    SING N N 42 
HGV "C5'" H10   SING N N 43 
HGV "C4'" H11   SING N N 44 
HGV "C1'" H12   SING N N 45 
HGV C2    H13   SING N N 46 
HGV N6    H14   SING N N 47 
HGV N6    H15   SING N N 48 
HGV C8    H16   SING N N 49 
HGV "C2'" H17   SING N N 50 
HGV "C2'" H18   SING N N 51 
HGV "C3'" H19   SING N N 52 
HGV "O3'" H20   SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HGV SMILES           ACDLabs              12.01 "P(=O)(O)(OP(O)(C(C)P(O)(O)=O)=O)OCC3OC(n1cnc2c1ncnc2N)CC3O"                                                                                                                                             
HGV InChI            InChI                1.03  "InChI=1S/C12H20N5O11P3/c1-6(29(19,20)21)30(22,23)28-31(24,25)26-3-8-7(18)2-9(27-8)17-5-16-10-11(13)14-4-15-12(10)17/h4-9,18H,2-3H2,1H3,(H,22,23)(H,24,25)(H2,13,14,15)(H2,19,20,21)/t6-,7-,8+,9+/m0/s1" 
HGV InChIKey         InChI                1.03  XGUYUUUETUJOLT-RBXMUDONSA-N                                                                                                                                                                              
HGV SMILES_CANONICAL CACTVS               3.385 "C[C@@H]([P](O)(O)=O)[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H](C[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                                     
HGV SMILES           CACTVS               3.385 "C[CH]([P](O)(O)=O)[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH](C[CH]1O)n2cnc3c(N)ncnc23"                                                                                                                           
HGV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H](P(=O)(O)O)P(=O)(O)OP(=O)(O)OC[C@@H]1[C@H](C[C@@H](O1)n2cnc3c2ncnc3N)O"                                                                                                                          
HGV SMILES           "OpenEye OEToolkits" 2.0.6 "CC(P(=O)(O)O)P(=O)(O)OP(=O)(O)OCC1C(CC(O1)n2cnc3c2ncnc3N)O"                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HGV "SYSTEMATIC NAME" ACDLabs              12.01 "2'-deoxy-5'-O-[(R)-hydroxy({(R)-hydroxy[(1S)-1-phosphonoethyl]phosphoryl}oxy)phosphoryl]adenosine"                                                        
HGV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(1~{S})-1-[[[(2~{R},3~{S},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]ethyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HGV "Create component" 2018-07-02 RCSB 
HGV "Initial release"  2018-08-22 RCSB 
# 
