data_M3V
# 
_chem_comp.id                                    M3V 
_chem_comp.name                                  "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(4-cyanophenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C16 H16 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               "THR, TYR, GLY" 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-03-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        328.323 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M3V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6OA8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M3V N1   N    N 0 1 N N N Y Y N 74.945 -1.922 12.512 -1.122 2.311  1.380  N    M3V 1  
M3V CA1  CA   C 0 1 N N R Y N N 73.552 -2.308 12.417 -1.976 1.733  0.333  CA   M3V 2  
M3V C3   C    C 0 1 N N N Y N Y 72.016 -0.559 9.499  -4.197 -1.143 0.852  C    M3V 3  
M3V O3   O    O 0 1 N N N Y N Y 72.120 0.257  8.516  -3.435 -1.408 1.752  O    M3V 4  
M3V CB1  CB1  C 0 1 N N R N N N 73.202 -3.538 13.260 -2.002 2.667  -0.878 CB1  M3V 5  
M3V CB2  CB2  C 0 1 N N N N N N 70.794 1.005  14.979 1.173  -1.870 -0.724 CB2  M3V 6  
M3V CG1  CG1  C 0 1 N N N N N N 74.072 -4.701 12.812 -2.442 4.064  -0.435 CG1  M3V 7  
M3V OG1  OG1  O 0 1 N N N N N N 73.443 -3.335 14.622 -0.696 2.739  -1.453 OG1  M3V 8  
M3V CG2  CG2  C 0 1 Y N N N N N 70.679 0.612  16.453 2.446  -1.236 -0.364 CG2  M3V 9  
M3V CD1  CD1  C 0 1 Y N N N N N 71.231 -0.544 16.985 2.471  0.104  0.047  CD1  M3V 10 
M3V CD2  CD2  C 0 1 Y N N N N N 69.962 1.476  17.260 3.637  -1.972 -0.425 CD2  M3V 11 
M3V CE1  CE1  C 0 1 Y N N N N N 71.069 -0.820 18.336 3.657  0.692  0.382  CE1  M3V 12 
M3V CE2  CE2  C 0 1 Y N N N N N 69.791 1.210  18.601 4.822  -1.380 -0.090 CE2  M3V 13 
M3V CZ   CZ   C 0 1 Y N N N N N 70.344 0.062  19.129 4.846  -0.041 0.314  CZ   M3V 14 
M3V C1   C1   C 0 1 N N N Y N N 72.712 -1.112 12.844 -1.426 0.391  -0.079 C1   M3V 15 
M3V C2   C2   C 0 1 N N N Y N N 71.669 0.950  12.618 -1.377 -1.709 -0.745 C2   M3V 16 
M3V CA2  CA2  C 0 1 N N N Y N N 71.488 0.364  14.007 -0.010 -1.190 -0.540 CA2  M3V 17 
M3V CA3  CA3  C 0 1 N N N Y N N 72.975 -0.049 10.571 -3.660 -0.704 -0.486 CA3  M3V 18 
M3V CN   CN   C 0 1 N N N N N N 70.133 -0.195 20.609 6.089  0.577  0.664  CN   M3V 19 
M3V N2   N2   N 0 1 N N N Y N N 72.135 -0.852 14.025 -0.163 0.104  -0.131 N2   M3V 20 
M3V N3   N3   N 0 1 N N N Y N N 72.465 -0.088 11.918 -2.196 -0.678 -0.439 N3   M3V 21 
M3V N40  N40  N 0 1 N N N N N N 69.948 -0.358 21.710 7.075  1.068  0.942  N40  M3V 22 
M3V O2   O2   O 0 1 N N N Y N N 71.276 1.964  12.160 -1.697 -2.824 -1.112 O2   M3V 23 
M3V H    H    H 0 1 N N N Y Y N 75.524 -2.690 12.237 -1.139 1.745  2.214  H    M3V 24 
M3V H2   H2   H 0 1 N Y N Y Y N 75.117 -1.143 11.909 -0.178 2.437  1.047  H2   M3V 25 
M3V HA1  HA   H 0 1 N N N Y N N 73.313 -2.536 11.368 -2.988 1.608  0.718  HA   M3V 26 
M3V H8   H8   H 0 1 N N N N N N 72.147 -3.796 13.088 -2.704 2.283  -1.618 H8   M3V 27 
M3V H9   H9   H 0 1 N N N N N N 70.261 1.895  14.678 1.163  -2.869 -1.132 H9   M3V 28 
M3V HG21 HG21 H 0 0 N N N N N N 73.830 -5.592 13.410 -3.438 4.009  0.003  HG21 M3V 29 
M3V HG22 HG22 H 0 0 N N N N N N 73.884 -4.911 11.749 -1.740 4.448  0.305  HG22 M3V 30 
M3V HG23 HG23 H 0 0 N N N N N N 75.132 -4.441 12.952 -2.461 4.730  -1.298 HG23 M3V 31 
M3V HG1  HG1  H 0 1 N N N N N N 73.213 -4.120 15.105 -0.638 3.315  -2.227 HG1  M3V 32 
M3V H14  H14  H 0 1 N N N N N N 71.783 -1.224 16.353 1.553  0.671  0.099  H14  M3V 33 
M3V H15  H15  H 0 1 N N N N N N 69.531 2.370  16.834 3.619  -3.005 -0.737 H15  M3V 34 
M3V H16  H16  H 0 1 N N N N N N 71.502 -1.711 18.766 3.678  1.724  0.698  H16  M3V 35 
M3V H17  H17  H 0 1 N N N N N N 69.233 1.889  19.228 5.740  -1.946 -0.138 H17  M3V 36 
M3V HA31 H18  H 0 1 N N N Y N N 73.886 -0.665 10.534 -3.987 -1.402 -1.256 H18  M3V 37 
M3V HA32 H19  H 0 1 N N N Y N N 73.228 0.995  10.333 -4.034 0.294  -0.717 H19  M3V 38 
M3V OXT  OXT  O 0 1 N Y N Y N Y 70.894 -1.231 9.610  -5.522 -1.241 1.044  OXT  M3V 39 
M3V HXT  HXT  H 0 1 N Y N Y N Y 70.308 -0.989 8.903  -5.819 -1.527 1.918  HXT  M3V 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M3V O3  C3   DOUB N N 1  
M3V C3  CA3  SING N N 2  
M3V CA3 N3   SING N N 3  
M3V N3  C2   SING N N 4  
M3V N3  C1   SING N N 5  
M3V O2  C2   DOUB N N 6  
M3V CA1 N1   SING N N 7  
M3V CA1 C1   SING N N 8  
M3V CA1 CB1  SING N N 9  
M3V C2  CA2  SING N N 10 
M3V CG1 CB1  SING N N 11 
M3V C1  N2   DOUB N N 12 
M3V CB1 OG1  SING N N 13 
M3V CA2 N2   SING N N 14 
M3V CA2 CB2  DOUB N Z 15 
M3V CB2 CG2  SING N N 16 
M3V CG2 CD1  DOUB Y N 17 
M3V CG2 CD2  SING Y N 18 
M3V CD1 CE1  SING Y N 19 
M3V CD2 CE2  DOUB Y N 20 
M3V CE1 CZ   DOUB Y N 21 
M3V CE2 CZ   SING Y N 22 
M3V CZ  CN   SING N N 23 
M3V CN  N40  TRIP N N 24 
M3V N1  H    SING N N 25 
M3V N1  H2   SING N N 26 
M3V CA1 HA1  SING N N 27 
M3V CB1 H8   SING N N 28 
M3V CB2 H9   SING N N 29 
M3V CG1 HG21 SING N N 30 
M3V CG1 HG22 SING N N 31 
M3V CG1 HG23 SING N N 32 
M3V OG1 HG1  SING N N 33 
M3V CD1 H14  SING N N 34 
M3V CD2 H15  SING N N 35 
M3V CE1 H16  SING N N 36 
M3V CE2 H17  SING N N 37 
M3V CA3 HA31 SING N N 38 
M3V CA3 HA32 SING N N 39 
M3V C3  OXT  SING N N 40 
M3V OXT HXT  SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M3V SMILES           ACDLabs              12.01 "NC(C2=NC(=[C@H]c1ccc(cc1)C#N)C(N2CC(O)=O)=O)C(O)C"                                                                                                 
M3V InChI            InChI                1.03  "InChI=1S/C16H16N4O4/c1-9(21)14(18)15-19-12(16(24)20(15)8-13(22)23)6-10-2-4-11(7-17)5-3-10/h2-6,9,14,21H,8,18H2,1H3,(H,22,23)/b12-6-/t9-,14+/m1/s1" 
M3V InChIKey         InChI                1.03  IPIWCCQKJIIXPN-XPXYSCHSSA-N                                                                                                                         
M3V SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)[C@H](N)C1=NC(=C\c2ccc(cc2)C#N)/C(=O)N1CC(O)=O"                                                                                          
M3V SMILES           CACTVS               3.385 "C[CH](O)[CH](N)C1=NC(=Cc2ccc(cc2)C#N)C(=O)N1CC(O)=O"                                                                                               
M3V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C1=N/C(=C\c2ccc(cc2)C#N)/C(=O)N1CC(=O)O)N)O"                                                                                         
M3V SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C1=NC(=Cc2ccc(cc2)C#N)C(=O)N1CC(=O)O)N)O"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
M3V "SYSTEMATIC NAME" ACDLabs              12.01 "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(4-cyanophenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid"            
M3V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(4~{Z})-2-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-4-[(4-cyanophenyl)methylidene]-5-oxidanylidene-imidazol-1-yl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M3V "Create component" 2019-03-21 RCSB 
M3V "Initial release"  2020-08-05 RCSB 
M3V "Modify backbone"  2023-11-03 PDBE 
M3V "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            M3V 
_pdbx_chem_comp_pcm.modified_residue_id                "THR, TYR, GLY" 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Chromophore/chromophore-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
