data_X2V
#

_chem_comp.id                                   X2V
_chem_comp.name                                 "4-[(6-cyanonaphthalen-1-yl)oxy]-3-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenyl sulfurofluoridate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H16 F N3 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-23
_chem_comp.pdbx_modified_date                   2021-01-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       497.452
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    X2V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KRE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X2V  C1   C1   C  0  1  Y  N  N  473.341  -16.114  128.489  -5.307   2.431  -0.060  C1   X2V   1  
X2V  C2   C2   C  0  1  Y  N  N  473.460  -17.114  127.522  -4.739   1.594  -1.038  C2   X2V   2  
X2V  C4   C3   C  0  1  Y  N  N  472.164  -15.797  125.957  -2.550   2.095  -0.210  C4   X2V   3  
X2V  O5   O1   O  0  1  N  N  N  470.740  -22.775  125.441  -3.074  -5.372  -1.593  O5   X2V   4  
X2V  C7   C4   C  0  1  Y  N  N  472.535  -15.558  121.566   1.602   1.716  -1.918  C7   X2V   5  
X2V  C8   C5   C  0  1  Y  N  N  472.191  -15.354  120.239   2.968   1.512  -1.863  C8   X2V   6  
X2V  C10  C6   C  0  1  Y  N  N  470.164  -16.618  120.556   2.642  -0.275  -0.290  C10  X2V   7  
X2V  C11  C7   C  0  1  Y  N  N  470.511  -16.825  121.877   1.273  -0.076  -0.349  C11  X2V   8  
X2V  C12  C8   C  0  1  N  N  N  468.442  -17.659  122.786   1.044  -1.868   1.198  C12  X2V   9  
X2V  C14  C9   C  0  1  N  N  N  469.158  -19.722  124.537  -1.987  -2.761   0.457  C14  X2V  10  
X2V  C16  C10  C  0  1  N  N  N  470.092  -21.905  124.837  -2.397  -4.749  -0.794  C16  X2V  11  
X2V  C17  C11  C  0  1  N  N  N  468.839  -21.331  122.789  -0.546  -4.619   0.625  C17  X2V  12  
X2V  C20  C12  C  0  1  Y  N  N  471.287  -13.618  126.623  -2.259   3.612   1.679  C20  X2V  13  
X2V  C21  C13  C  0  1  Y  N  N  472.008  -14.790  126.948  -3.109   2.946   0.777  C21  X2V  14  
X2V  C22  C14  C  0  1  Y  N  N  472.605  -14.978  128.216  -4.501   3.106   0.842  C22  X2V  15  
X2V  N    N1   N  0  1  N  N  N  474.702  -16.293  130.678  -7.857   2.716   0.048  N    X2V  16  
X2V  C    C15  C  0  1  N  N  N  474.085  -16.211  129.720  -6.729   2.590   0.000  C    X2V  17  
X2V  O    O2   O  0  1  N  N  N  471.829  -16.555  123.739  -0.592   1.132  -1.211  O    X2V  18  
X2V  C13  C16  C  0  1  N  N  N  467.997  -19.059  122.465  -0.044  -2.641   1.946  C13  X2V  19  
X2V  C15  C17  C  0  1  N  N  N  469.848  -20.579  125.305  -2.754  -3.428  -0.431  C15  X2V  20  
X2V  C18  C18  C  0  1  Y  N  N  470.907  -14.416  124.395  -0.352   2.607   0.630  C18  X2V  21  
X2V  C19  C19  C  0  1  Y  N  N  470.757  -13.449  125.377  -0.912   3.437   1.599  C19  X2V  22  
X2V  C3   C20  C  0  1  Y  N  N  472.895  -16.962  126.291  -3.394   1.428  -1.114  C3   X2V  23  
X2V  C5   C21  C  0  1  Y  N  N  471.599  -15.567  124.675  -1.150   1.938  -0.271  C5   X2V  24  
X2V  C6   C22  C  0  1  Y  N  N  471.683  -16.279  122.390   0.751   0.927  -1.161  C6   X2V  25  
X2V  C9   C23  C  0  1  Y  N  N  471.003  -15.870  119.745   3.490   0.517  -1.050  C9   X2V  26  
X2V  F    F1   F  0  1  N  N  N  470.045  -13.769  116.952   5.354   0.349   1.469  F    X2V  27  
X2V  N1   N2   N  0  1  N  N  N  468.674  -20.065  123.301  -0.878  -3.365   0.983  N1   X2V  28  
X2V  N2   N3   N  0  1  N  N  N  469.558  -22.186  123.592  -1.299  -5.312  -0.249  N2   X2V  29  
X2V  O1   O3   O  0  1  N  N  N  470.602  -15.589  118.410   4.834   0.318  -0.998  O1   X2V  30  
X2V  O2   O4   O  0  1  N  N  N  468.957  -13.896  119.061   4.812   2.348   0.199  O2   X2V  31  
X2V  O3   O5   O  0  1  N  N  N  468.420  -15.472  117.235   6.926   1.086  -0.230  O3   X2V  32  
X2V  O4   O6   O  0  1  N  N  N  469.872  -17.604  122.794   0.439  -0.859   0.387  O4   X2V  33  
X2V  O6   O7   O  0  1  N  N  N  468.336  -21.691  121.734   0.444  -5.137   1.105  O6   X2V  34  
X2V  S    S1   S  0  1  N  N  N  469.318  -14.697  117.972   5.540   1.134   0.076  S    X2V  35  
X2V  H1   H1   H  0  1  N  N  N  474.005  -18.017  127.752  -5.381   1.078  -1.736  H1   X2V  36  
X2V  H2   H2   H  0  1  N  N  N  473.460  -15.159  121.956   1.198   2.494  -2.549  H2   X2V  37  
X2V  H3   H3   H  0  1  N  N  N  472.848  -14.794  119.590   3.630   2.128  -2.454  H3   X2V  38  
X2V  H4   H4   H  0  1  N  N  N  469.250  -17.034  120.160   3.049  -1.052   0.340  H4   X2V  39  
X2V  H5   H5   H  0  1  N  N  N  468.052  -16.967  122.025   1.717  -1.401   1.917  H5   X2V  40  
X2V  H6   H6   H  0  1  N  N  N  468.058  -17.370  123.776   1.607  -2.554   0.565  H6   X2V  41  
X2V  H7   H7   H  0  1  N  N  N  468.977  -18.724  124.907  -2.244  -1.753   0.746  H7   X2V  42  
X2V  H8   H8   H  0  1  N  N  N  471.154  -12.848  127.369  -2.675   4.262   2.434  H8   X2V  43  
X2V  H9   H9   H  0  1  N  N  N  472.484  -14.224  128.980  -4.940   3.751   1.589  H9   X2V  44  
X2V  H10  H10  H  0  1  N  N  N  466.912  -19.133  122.631   0.420  -3.350   2.631  H10  X2V  45  
X2V  H11  H11  H  0  1  N  N  N  468.221  -19.268  121.409  -0.664  -1.943   2.510  H11  X2V  46  
X2V  H12  H12  H  0  1  N  N  N  470.216  -20.267  126.271  -3.630  -2.961  -0.857  H12  X2V  47  
X2V  H13  H13  H  0  1  N  N  N  470.481  -14.264  123.414   0.720   2.488   0.585  H13  X2V  48  
X2V  H14  H14  H  0  1  N  N  N  470.210  -12.545  125.152  -0.266   3.951   2.295  H14  X2V  49  
X2V  H15  H15  H  0  1  N  N  N  473.007  -17.746  125.556  -2.972   0.779  -1.867  H15  X2V  50  
X2V  H16  H16  H  0  1  N  N  N  469.711  -23.109  123.238  -1.046  -6.215  -0.496  H16  X2V  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X2V  F    S    SING  N  N   1  
X2V  O3   S    DOUB  N  N   2  
X2V  S    O1   SING  N  N   3  
X2V  S    O2   DOUB  N  N   4  
X2V  O1   C9   SING  N  N   5  
X2V  C9   C8   DOUB  Y  N   6  
X2V  C9   C10  SING  Y  N   7  
X2V  C8   C7   SING  Y  N   8  
X2V  C10  C11  DOUB  Y  N   9  
X2V  C7   C6   DOUB  Y  N  10  
X2V  O6   C17  DOUB  N  N  11  
X2V  C11  C6   SING  Y  N  12  
X2V  C11  O4   SING  N  N  13  
X2V  C6   O    SING  N  N  14  
X2V  C13  C12  SING  N  N  15  
X2V  C13  N1   SING  N  N  16  
X2V  C12  O4   SING  N  N  17  
X2V  C17  N1   SING  N  N  18  
X2V  C17  N2   SING  N  N  19  
X2V  N1   C14  SING  N  N  20  
X2V  N2   C16  SING  N  N  21  
X2V  O    C5   SING  N  N  22  
X2V  C18  C5   DOUB  Y  N  23  
X2V  C18  C19  SING  Y  N  24  
X2V  C14  C15  DOUB  N  N  25  
X2V  C5   C4   SING  Y  N  26  
X2V  C16  C15  SING  N  N  27  
X2V  C16  O5   DOUB  N  N  28  
X2V  C19  C20  DOUB  Y  N  29  
X2V  C4   C3   DOUB  Y  N  30  
X2V  C4   C21  SING  Y  N  31  
X2V  C3   C2   SING  Y  N  32  
X2V  C20  C21  SING  Y  N  33  
X2V  C21  C22  DOUB  Y  N  34  
X2V  C2   C1   DOUB  Y  N  35  
X2V  C22  C1   SING  Y  N  36  
X2V  C1   C    SING  N  N  37  
X2V  C    N    TRIP  N  N  38  
X2V  C2   H1   SING  N  N  39  
X2V  C7   H2   SING  N  N  40  
X2V  C8   H3   SING  N  N  41  
X2V  C10  H4   SING  N  N  42  
X2V  C12  H5   SING  N  N  43  
X2V  C12  H6   SING  N  N  44  
X2V  C14  H7   SING  N  N  45  
X2V  C20  H8   SING  N  N  46  
X2V  C22  H9   SING  N  N  47  
X2V  C13  H10  SING  N  N  48  
X2V  C13  H11  SING  N  N  49  
X2V  C15  H12  SING  N  N  50  
X2V  C18  H13  SING  N  N  51  
X2V  C19  H14  SING  N  N  52  
X2V  C3   H15  SING  N  N  53  
X2V  N2   H16  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X2V  SMILES            ACDLabs               12.01  "c4(C#N)ccc1c(cccc1Oc2ccc(cc2OCCN3C=CC(=O)NC3=O)OS(F)(=O)=O)c4"  
X2V  InChI             InChI                 1.03   "InChI=1S/C23H16FN3O7S/c24-35(30,31)34-17-5-7-20(21(13-17)32-11-10-27-9-8-22(28)26-23(27)29)33-19-3-1-2-16-12-15(14-25)4-6-18(16)19/h1-9,12-13H,10-11H2,(H,26,28,29)"  
X2V  InChIKey          InChI                 1.03   XVIQCYUMLUTRMI-UHFFFAOYSA-N  
X2V  SMILES_CANONICAL  CACTVS                3.385  "F[S](=O)(=O)Oc1ccc(Oc2cccc3cc(ccc23)C#N)c(OCCN4C=CC(=O)NC4=O)c1"  
X2V  SMILES            CACTVS                3.385  "F[S](=O)(=O)Oc1ccc(Oc2cccc3cc(ccc23)C#N)c(OCCN4C=CC(=O)NC4=O)c1"  
X2V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2cc(ccc2c(c1)Oc3ccc(cc3OCCN4C=CC(=O)NC4=O)OS(=O)(=O)F)C#N"  
X2V  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2cc(ccc2c(c1)Oc3ccc(cc3OCCN4C=CC(=O)NC4=O)OS(=O)(=O)F)C#N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X2V  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-[(6-cyanonaphthalen-1-yl)oxy]-3-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenyl sulfurofluoridate"  
X2V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[2-[2-(6-cyanonaphthalen-1-yl)oxy-5-fluorosulfonyloxy-phenoxy]ethyl]-2,4-bis(oxidanylidene)pyrimidine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X2V  "Create component"  2020-11-23  RCSB  
X2V  "Initial release"   2021-01-13  RCSB  
##
