data_2JW
# 
_chem_comp.id                                    2JW 
_chem_comp.name                                  "1-{2-deoxy-3,5-O-[(4-nitrophenyl)(phosphono)methylidene]-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H18 N3 O10 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-12 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        455.313 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2JW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4NFL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2JW O2  O2  O 0  1 N N N -1.549 28.299 26.536 -2.655 0.570  2.475  O2  2JW 1  
2JW C2  C2  C 0  1 N N N -1.950 27.280 26.052 -2.801 0.779  1.286  C2  2JW 2  
2JW N3  N3  N 0  1 N N N -1.202 26.685 25.047 -3.842 0.224  0.637  N3  2JW 3  
2JW C4  C4  C 0  1 N N N -1.624 25.509 24.478 -4.021 0.451  -0.680 C4  2JW 4  
2JW O4  O4  O 0  1 N N N -0.911 25.037 23.597 -4.962 -0.051 -1.268 O4  2JW 5  
2JW C5  C5  C 0  1 N N N -2.804 24.901 24.923 -3.104 1.278  -1.373 C5  2JW 6  
2JW CAR CAR C 0  1 N N N -3.273 23.701 24.367 -3.282 1.547  -2.845 CAR 2JW 7  
2JW C6  C6  C 0  1 N N N -3.543 25.518 25.936 -2.070 1.822  -0.698 C6  2JW 8  
2JW N1  N1  N 0  1 N N N -3.077 26.748 26.497 -1.923 1.567  0.639  N1  2JW 9  
2JW CAJ CAJ C 0  1 N N R -3.792 27.481 27.526 -0.804 2.162  1.373  CAJ 2JW 10 
2JW OAF OAF O 0  1 N N N -3.180 27.421 28.813 -0.190 3.185  0.578  OAF 2JW 11 
2JW CAI CAI C 0  1 N N N -5.195 26.994 27.672 0.268  1.085  1.657  CAI 2JW 12 
2JW CAG CAG C 0  1 N N R -5.332 26.672 29.133 1.577  1.873  1.422  CAG 2JW 13 
2JW OAH OAH O 0  1 N N N -5.097 25.348 29.235 2.646  1.019  1.074  OAH 2JW 14 
2JW CAE CAE C 0  1 N N R -4.229 27.506 29.751 1.169  2.809  0.265  CAE 2JW 15 
2JW CAC CAC C 0  1 N N N -3.726 26.960 31.092 1.127  2.027  -1.052 CAC 2JW 16 
2JW OAD OAD O 0  1 N N N -3.544 25.551 31.006 2.317  1.255  -1.207 OAD 2JW 17 
2JW CAB CAB C 0  1 N N R -4.715 24.845 30.547 2.500  0.302  -0.153 CAB 2JW 18 
2JW PAA PAA P 0  1 N N N -6.052 24.953 31.799 3.999  -0.686 -0.470 PAA 2JW 19 
2JW OBA OBA O 0  1 N N N -6.755 23.667 31.649 4.146  -1.817 0.666  OBA 2JW 20 
2JW OBC OBC O 0  1 N N N -6.912 26.115 31.574 3.893  -1.331 -1.798 OBC 2JW 21 
2JW OBB OBB O 0  1 N N N -5.213 25.035 33.027 5.291  0.274  -0.441 OBB 2JW 22 
2JW CAU CAU C 0  1 Y N N -4.339 23.496 30.488 1.300  -0.605 -0.072 CAU 2JW 23 
2JW CAV CAV C 0  1 Y N N -4.725 22.645 29.448 0.357  -0.595 -1.083 CAV 2JW 24 
2JW CAW CAW C 0  1 Y N N -4.290 21.301 29.463 -0.744 -1.427 -1.010 CAW 2JW 25 
2JW CAX CAX C 0  1 Y N N -3.470 20.822 30.506 -0.903 -2.269 0.075  CAX 2JW 26 
2JW NCA NCA N 1  1 N N N -3.004 19.575 30.579 -2.083 -3.160 0.154  NCA 2JW 27 
2JW OCA OCA O -1 1 N N N -3.727 18.565 30.110 -2.222 -3.902 1.110  OCA 2JW 28 
2JW OCB OCB O 0  1 N N N -1.601 19.352 31.276 -2.914 -3.150 -0.736 OCB 2JW 29 
2JW CAY CAY C 0  1 Y N N -3.093 21.688 31.524 0.040  -2.280 1.085  CAY 2JW 30 
2JW CAZ CAZ C 0  1 Y N N -3.513 23.009 31.510 1.144  -1.451 1.010  CAZ 2JW 31 
2JW H1  H1  H 0  1 N N N -0.354 27.113 24.736 -4.466 -0.342 1.119  H1  2JW 32 
2JW H2  H2  H 0  1 N N N -4.209 23.407 24.864 -4.167 1.024  -3.206 H2  2JW 33 
2JW H3  H3  H 0  1 N N N -3.458 23.843 23.292 -3.402 2.619  -3.007 H3  2JW 34 
2JW H4  H4  H 0  1 N N N -2.519 22.912 24.509 -2.405 1.194  -3.388 H4  2JW 35 
2JW H5  H5  H 0  1 N N N -4.459 25.069 26.292 -1.360 2.455  -1.210 H5  2JW 36 
2JW H6  H6  H 0  1 N N N -3.841 28.536 27.217 -1.161 2.585  2.312  H6  2JW 37 
2JW H7  H7  H 0  1 N N N -5.910 27.776 27.378 0.205  0.733  2.687  H7  2JW 38 
2JW H8  H8  H 0  1 N N N -5.360 26.096 27.059 0.182  0.254  0.957  H8  2JW 39 
2JW H9  H9  H 0  1 N N N -6.317 26.977 29.516 1.833  2.447  2.313  H9  2JW 40 
2JW H10 H10 H 0  1 N N N -4.571 28.544 29.879 1.822  3.680  0.206  H10 2JW 41 
2JW H11 H11 H 0  1 N N N -2.767 27.437 31.343 0.263  1.362  -1.049 H11 2JW 42 
2JW H12 H12 H 0  1 N N N -4.463 27.185 31.877 1.042  2.726  -1.884 H12 2JW 43 
2JW H13 H13 H 0  1 N N N -7.665 23.827 31.427 4.924  -2.382 0.560  H13 2JW 44 
2JW H14 H14 H 0  1 N N N -5.383 25.856 33.473 5.423  0.731  0.401  H14 2JW 45 
2JW H15 H15 H 0  1 N N N -5.347 23.010 28.644 0.481  0.063  -1.931 H15 2JW 46 
2JW H16 H16 H 0  1 N N N -4.588 20.634 28.668 -1.481 -1.418 -1.799 H16 2JW 47 
2JW H17 H17 H 0  1 N N N -2.470 21.331 32.330 -0.083 -2.938 1.933  H17 2JW 48 
2JW H18 H18 H 0  1 N N N -3.198 23.674 32.300 1.883  -1.462 1.797  H18 2JW 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2JW O4  C4  DOUB N N 1  
2JW CAR C5  SING N N 2  
2JW C4  C5  SING N N 3  
2JW C4  N3  SING N N 4  
2JW C5  C6  DOUB N N 5  
2JW N3  C2  SING N N 6  
2JW C6  N1  SING N N 7  
2JW C2  N1  SING N N 8  
2JW C2  O2  DOUB N N 9  
2JW N1  CAJ SING N N 10 
2JW CAJ CAI SING N N 11 
2JW CAJ OAF SING N N 12 
2JW CAI CAG SING N N 13 
2JW OAF CAE SING N N 14 
2JW CAG OAH SING N N 15 
2JW CAG CAE SING N N 16 
2JW OAH CAB SING N N 17 
2JW CAV CAW DOUB Y N 18 
2JW CAV CAU SING Y N 19 
2JW CAW CAX SING Y N 20 
2JW CAE CAC SING N N 21 
2JW OCA NCA SING N N 22 
2JW CAU CAB SING N N 23 
2JW CAU CAZ DOUB Y N 24 
2JW CAX NCA SING N N 25 
2JW CAX CAY DOUB Y N 26 
2JW CAB OAD SING N N 27 
2JW CAB PAA SING N N 28 
2JW NCA OCB DOUB N N 29 
2JW OAD CAC SING N N 30 
2JW CAZ CAY SING Y N 31 
2JW OBC PAA DOUB N N 32 
2JW OBA PAA SING N N 33 
2JW PAA OBB SING N N 34 
2JW N3  H1  SING N N 35 
2JW CAR H2  SING N N 36 
2JW CAR H3  SING N N 37 
2JW CAR H4  SING N N 38 
2JW C6  H5  SING N N 39 
2JW CAJ H6  SING N N 40 
2JW CAI H7  SING N N 41 
2JW CAI H8  SING N N 42 
2JW CAG H9  SING N N 43 
2JW CAE H10 SING N N 44 
2JW CAC H11 SING N N 45 
2JW CAC H12 SING N N 46 
2JW OBA H13 SING N N 47 
2JW OBB H14 SING N N 48 
2JW CAV H15 SING N N 49 
2JW CAW H16 SING N N 50 
2JW CAY H17 SING N N 51 
2JW CAZ H18 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2JW SMILES           ACDLabs              12.01 "[O-][N+](=O)c1ccc(cc1)C3(OCC4OC(N2C=C(C(=O)NC2=O)C)CC4O3)P(=O)(O)O"                                                                                                                             
2JW InChI            InChI                1.03  "InChI=1S/C17H18N3O10P/c1-9-7-19(16(22)18-15(9)21)14-6-12-13(29-14)8-28-17(30-12,31(25,26)27)10-2-4-11(5-3-10)20(23)24/h2-5,7,12-14H,6,8H2,1H3,(H,18,21,22)(H2,25,26,27)/t12-,13-,14-,17-/m1/s1" 
2JW InChIKey         InChI                1.03  BODNGCHFOUEZME-VMUDFCTBSA-N                                                                                                                                                                      
2JW SMILES_CANONICAL CACTVS               3.385 "CC1=CN([C@H]2C[C@H]3O[C@](OC[C@H]3O2)(c4ccc(cc4)[N+]([O-])=O)[P](O)(O)=O)C(=O)NC1=O"                                                                                                            
2JW SMILES           CACTVS               3.385 "CC1=CN([CH]2C[CH]3O[C](OC[CH]3O2)(c4ccc(cc4)[N+]([O-])=O)[P](O)(O)=O)C(=O)NC1=O"                                                                                                                
2JW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]3[C@H](O2)CO[C@@](O3)(c4ccc(cc4)[N+](=O)[O-])P(=O)(O)O"                                                                                                          
2JW SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2CC3C(O2)COC(O3)(c4ccc(cc4)[N+](=O)[O-])P(=O)(O)O"                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2JW "SYSTEMATIC NAME" ACDLabs              12.01 "1-{2-deoxy-3,5-O-[(4-nitrophenyl)(phosphono)methylidene]-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione"                                
2JW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,4aR,6R,7aR)-6-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-2-(4-nitrophenyl)-4a,6,7,7a-tetrahydro-4H-furo[3,2-d][1,3]dioxin-2-yl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2JW "Create component" 2013-11-12 RCSB 
2JW "Initial release"  2014-09-10 RCSB 
# 
