data_5OW
# 
_chem_comp.id                                    5OW 
_chem_comp.name                                  "(2~{S})-2-azanyl-6-[[(~{Z})-~{C}-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-~{N}-[(2~{R})-1-oxidanyl-1-oxidanylidene-3-sulfanyl-propan-2-yl]carbonimidoyl]amino]hexanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C17 H27 N4 O9 P S" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        494.456 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     5OW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EIG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5OW N1    N1    N 0 1 Y N N N N N 55.021 28.700 39.187 1.952  -0.686 3.714  N1    5OW 1  
5OW C2    C2    C 0 1 Y N N N N N 55.564 29.690 38.445 1.558  0.571  3.746  C2    5OW 2  
5OW C3    C3    C 0 1 Y N N N N N 56.331 30.674 39.040 1.256  1.251  2.575  C3    5OW 3  
5OW C7    C7    C 0 1 N N N N N N 60.691 32.837 40.811 2.304  2.061  -2.971 C7    5OW 4  
5OW O8    O8    O 0 1 N N N N N N 61.360 33.866 41.038 1.834  2.346  -4.196 O8    5OW 5  
5OW CA    CA    C 0 1 N N S Y N N 53.110 36.732 41.776 -6.085 -0.812 0.242  CA    5OW 6  
5OW CB    CB    C 0 1 N N N N N N 53.556 35.889 40.587 -5.010 0.026  -0.454 CB    5OW 7  
5OW CD    CD    C 0 1 N N N N N N 55.380 34.663 41.917 -2.589 0.640  -0.460 CD    5OW 8  
5OW CE    CE    C 0 1 N N N N N N 55.424 33.188 41.536 -1.241 0.416  0.229  CE    5OW 9  
5OW CG    CG    C 0 1 N N N N N N 55.036 35.528 40.708 -3.663 -0.198 0.235  CG    5OW 10 
5OW O9    O9    O 0 1 N N N N N N 60.905 32.100 39.824 3.235  1.301  -2.843 O9    5OW 11 
5OW C1    C1    C 0 1 N N R N N N 59.585 32.468 41.758 1.670  2.688  -1.757 C1    5OW 12 
5OW C10   C10   C 0 1 N N N N N N 60.127 31.723 42.973 2.198  4.114  -1.585 C10   5OW 13 
5OW S11   S11   S 0 1 N N N N N N 61.583 32.497 43.713 1.435  4.869  -0.123 S11   5OW 14 
5OW N4    N4    N 0 1 N N N N N N 58.684 31.508 41.144 2.004  1.898  -0.569 N4    5OW 15 
5OW "C4'" "C4'" C 0 1 N N N N N N 57.374 31.699 41.062 1.067  1.260  0.073  "C4'" 5OW 16 
5OW C4    C4    C 0 1 Y N N N N N 56.539 30.641 40.403 1.377  0.578  1.350  C4    5OW 17 
5OW C5    C5    C 0 1 Y N N N N N 55.980 29.619 41.144 1.799  -0.754 1.370  C5    5OW 18 
5OW "C5'" "C5'" C 0 1 N N N N N N 56.210 29.583 42.633 1.948  -1.528 0.085  "C5'" 5OW 19 
5OW OP4   OP4   O 0 1 N N N N N N 55.031 29.206 43.336 2.388  -2.856 0.376  OP4   5OW 20 
5OW P     P     P 0 1 N N N N N N 54.929 29.620 44.886 2.653  -3.962 -0.763 P     5OW 21 
5OW OP3   OP3   O 0 1 N N N N N N 55.084 28.306 45.610 3.882  -3.493 -1.691 OP3   5OW 22 
5OW OP2   OP2   O 0 1 N N N N N N 56.077 30.582 45.068 3.010  -5.371 -0.071 OP2   5OW 23 
5OW OP1   OP1   O 0 1 N N N N N N 53.569 30.258 45.023 1.438  -4.114 -1.594 OP1   5OW 24 
5OW C6    C6    C 0 1 Y N N N N N 55.210 28.649 40.512 2.078  -1.352 2.582  C6    5OW 25 
5OW "C2'" "C2'" C 0 1 N N N N N N 55.338 29.730 36.959 1.434  1.278  5.071  "C2'" 5OW 26 
5OW O3    O3    O 0 1 N N N N N N 56.878 31.670 38.288 0.850  2.546  2.614  O3    5OW 27 
5OW NZ    NZ    N 0 1 N N N N N N 56.830 32.815 41.543 -0.213 1.219  -0.437 NZ    5OW 28 
5OW N     N     N 0 1 N N N Y Y N 52.551 35.827 42.799 -5.787 -2.239 0.058  N     5OW 29 
5OW C     C     C 0 1 N N N Y N Y 52.125 37.805 41.382 -7.432 -0.499 -0.356 C     5OW 30 
5OW O     O     O 0 1 N N N Y N Y 51.803 38.659 42.233 -7.915 -1.241 -1.178 O     5OW 31 
5OW H1    H1    H 0 1 N N N N N N 62.018 33.972 40.361 2.273  1.919  -4.945 H1    5OW 32 
5OW HA    H2    H 0 1 N N N Y N N 54.001 37.224 42.194 -6.096 -0.578 1.306  H2    5OW 33 
5OW H3    H3    H 0 1 N N N N N N 53.398 36.459 39.660 -4.938 -0.271 -1.500 H3    5OW 34 
5OW H4    H4    H 0 1 N N N N N N 52.960 34.965 40.555 -5.278 1.081  -0.394 H4    5OW 35 
5OW H5    H5    H 0 1 N N N N N N 56.364 34.964 42.307 -2.856 1.695  -0.400 H5    5OW 36 
5OW H6    H6    H 0 1 N N N N N N 54.616 34.811 42.695 -2.516 0.343  -1.506 H6    5OW 37 
5OW H7    H7    H 0 1 N N N N N N 54.994 33.039 40.535 -1.314 0.714  1.275  H7    5OW 38 
5OW H8    H8    H 0 1 N N N N N N 54.865 32.587 42.269 -0.974 -0.639 0.169  H8    5OW 39 
5OW H9    H9    H 0 1 N N N N N N 55.332 34.982 39.800 -3.736 0.099  1.281  H9    5OW 40 
5OW H10   H10   H 0 1 N N N N N N 55.613 36.462 40.779 -3.395 -1.253 0.175  H10   5OW 41 
5OW H11   H11   H 0 1 N N N N N N 59.042 33.369 42.080 0.588  2.714  -1.884 H11   5OW 42 
5OW H12   H12   H 0 1 N N N N N N 59.334 31.677 43.734 3.280  4.088  -1.458 H12   5OW 43 
5OW H13   H13   H 0 1 N N N N N N 60.397 30.703 42.662 1.950  4.702  -2.469 H13   5OW 44 
5OW H14   H14   H 0 1 N N N N N N 61.843 31.694 44.701 1.982  6.097  -0.097 H14   5OW 45 
5OW H15   H15   H 0 1 N N N N N N 57.005 28.856 42.854 0.987  -1.568 -0.428 H15   5OW 46 
5OW H16   H16   H 0 1 N N N N N N 56.523 30.582 42.970 2.680  -1.034 -0.554 H16   5OW 47 
5OW H17   H17   H 0 1 N N N N N N 54.270 28.088 46.049 4.713  -3.373 -1.212 H17   5OW 48 
5OW H18   H18   H 0 1 N N N N N N 55.737 31.452 45.243 3.182  -6.085 -0.699 H18   5OW 49 
5OW H19   H19   H 0 1 N N N N N N 54.764 27.853 41.090 2.404  -2.381 2.605  H19   5OW 50 
5OW H20   H20   H 0 1 N N N N N N 54.711 28.877 36.660 0.427  1.140  5.463  H20   5OW 51 
5OW H21   H21   H 0 1 N N N N N N 54.832 30.669 36.690 2.158  0.864  5.773  H21   5OW 52 
5OW H22   H22   H 0 1 N N N N N N 56.306 29.673 36.439 1.628  2.342  4.935  H22   5OW 53 
5OW H23   H23   H 0 1 N N N N N N 57.371 32.257 38.849 1.573  3.186  2.563  H23   5OW 54 
5OW H24   H24   H 0 1 N N N N N N 57.460 33.472 41.956 -0.432 1.722  -1.237 H24   5OW 55 
5OW H     H25   H 0 1 N N N Y Y N 52.252 36.361 43.590 -5.771 -2.482 -0.921 H25   5OW 56 
5OW H2    H26   H 0 1 N Y N Y Y N 51.771 35.333 42.416 -4.918 -2.488 0.507  H26   5OW 57 
5OW OXT   OXT   O 0 1 N Y N Y N Y 51.727 37.832 40.430 -8.095 0.604  0.024  OXT   5OW 58 
5OW HXT   HXT   H 0 1 N Y N Y N Y 51.130 38.567 40.357 -8.955 0.763  -0.388 HXT   5OW 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5OW "C2'" C2    SING N N 1  
5OW O3    C3    SING N N 2  
5OW C2    C3    DOUB Y N 3  
5OW C2    N1    SING Y N 4  
5OW C3    C4    SING Y N 5  
5OW N1    C6    DOUB Y N 6  
5OW O9    C7    DOUB N N 7  
5OW C4    "C4'" SING N N 8  
5OW C4    C5    DOUB Y N 9  
5OW C6    C5    SING Y N 10 
5OW CB    CG    SING N N 11 
5OW CB    CA    SING N N 12 
5OW CG    CD    SING N N 13 
5OW C7    O8    SING N N 14 
5OW C7    C1    SING N N 15 
5OW "C4'" N4    DOUB N N 16 
5OW "C4'" NZ    SING N N 17 
5OW N4    C1    SING N N 18 
5OW C5    "C5'" SING N N 19 
5OW C     CA    SING N N 20 
5OW C     O     DOUB N N 21 
5OW CE    NZ    SING N N 22 
5OW CE    CD    SING N N 23 
5OW C1    C10   SING N N 24 
5OW CA    N     SING N N 25 
5OW "C5'" OP4   SING N N 26 
5OW C10   S11   SING N N 27 
5OW OP4   P     SING N N 28 
5OW P     OP1   DOUB N N 29 
5OW P     OP2   SING N N 30 
5OW P     OP3   SING N N 31 
5OW O8    H1    SING N N 32 
5OW CA    HA    SING N N 33 
5OW CB    H3    SING N N 34 
5OW CB    H4    SING N N 35 
5OW CD    H5    SING N N 36 
5OW CD    H6    SING N N 37 
5OW CE    H7    SING N N 38 
5OW CE    H8    SING N N 39 
5OW CG    H9    SING N N 40 
5OW CG    H10   SING N N 41 
5OW C1    H11   SING N N 42 
5OW C10   H12   SING N N 43 
5OW C10   H13   SING N N 44 
5OW S11   H14   SING N N 45 
5OW "C5'" H15   SING N N 46 
5OW "C5'" H16   SING N N 47 
5OW OP3   H17   SING N N 48 
5OW OP2   H18   SING N N 49 
5OW C6    H19   SING N N 50 
5OW "C2'" H20   SING N N 51 
5OW "C2'" H21   SING N N 52 
5OW "C2'" H22   SING N N 53 
5OW O3    H23   SING N N 54 
5OW NZ    H24   SING N N 55 
5OW N     H     SING N N 56 
5OW N     H2    SING N N 57 
5OW C     OXT   SING N N 58 
5OW OXT   HXT   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5OW InChI            InChI                1.03  "InChI=1S/C17H27N4O9PS/c1-9-14(22)13(10(6-20-9)7-30-31(27,28)29)15(21-12(8-32)17(25)26)19-5-3-2-4-11(18)16(23)24/h6,11-12,22,32H,2-5,7-8,18H2,1H3,(H,19,21)(H,23,24)(H,25,26)(H2,27,28,29)/t11-,12-/m0/s1" 
5OW InChIKey         InChI                1.03  TVEKNDBIWFZVKM-RYUDHWBXSA-N                                                                                                                                                                                
5OW SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(c1O)C(NCCCC[C@H](N)C(O)=O)=N[C@@H](CS)C(O)=O"                                                                                                                                      
5OW SMILES           CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(c1O)C(NCCCC[CH](N)C(O)=O)=N[CH](CS)C(O)=O"                                                                                                                                         
5OW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cc1c(c(c(cn1)COP(=O)(O)O)/C(=N/[C@@H](CS)C(=O)O)/NCCCC[C@@H](C(=O)O)N)O"                                                                                                                                  
5OW SMILES           "OpenEye OEToolkits" 2.0.4 "Cc1c(c(c(cn1)COP(=O)(O)O)C(=NC(CS)C(=O)O)NCCCCC(C(=O)O)N)O"                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           5OW 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.4 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-6-[[(~{Z})-~{C}-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-~{N}-[(2~{R})-1-oxidanyl-1-oxidanylidene-3-sulfanyl-propan-2-yl]carbonimidoyl]amino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5OW "Create component" 2015-10-30 RCSB 
5OW "Initial release"  2016-11-09 RCSB 
5OW "Modify backbone"  2023-11-03 PDBE 
5OW "Modify PCM"       2024-09-27 PDBE 
# 
