data_L3W
#

_chem_comp.id                                   L3W
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[[(1~{E},3~{Z})-5-azanyl-4-oxidanyl-5-oxidanylidene-penta-1,3-dienyl]-methanoyl-amino]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H29 N7 O16 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-18
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       697.440
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L3W
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6SAQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L3W  C1   C1   C  0  1  Y  N  N  25.861   -8.698  -26.136   -9.175   3.594  -0.992  C1   L3W   1  
L3W  C3   C2   C  0  1  Y  N  N  26.150  -10.008  -24.266   -9.114   2.096  -2.747  C3   L3W   2  
L3W  N6   N1   N  0  1  Y  N  N  26.125   -9.632  -27.058   -8.247   2.948  -0.319  N6   L3W   3  
L3W  C8   C3   C  0  1  Y  N  N  26.944  -12.886  -26.070   -6.606   0.002  -1.340  C8   L3W   4  
L3W  C10  C4   C  0  1  N  N  R  26.851  -12.247  -28.498   -6.001   1.033   0.882  C10  L3W   5  
L3W  C12  C5   C  0  1  N  N  R  28.295  -12.413  -28.916   -6.784   0.325   2.017  C12  L3W   6  
L3W  C14  C6   C  0  1  N  N  S  28.173  -13.320  -30.125   -5.654  -0.052   3.006  C14  L3W   7  
L3W  C16  C7   C  0  1  N  N  R  26.995  -14.215  -29.776   -4.376  -0.031   2.144  C16  L3W   8  
L3W  C19  C8   C  0  1  N  N  N  27.451  -15.547  -29.196   -3.699  -1.402   2.185  C19  L3W   9  
L3W  O28  O1   O  0  1  N  N  N  30.713  -18.572  -30.428    2.103  -2.153  -0.821  O28  L3W  10  
L3W  C30  C9   C  0  1  N  N  R  30.126  -20.842  -30.883    4.294  -1.528  -1.628  C30  L3W  11  
L3W  C32  C10  C  0  1  N  N  S  30.283  -22.298  -30.488    5.508  -2.011  -2.452  C32  L3W  12  
L3W  C34  C11  C  0  1  N  N  R  30.402  -23.054  -31.824    6.717  -1.329  -1.775  C34  L3W  13  
L3W  N2   N2   N  0  1  Y  N  N  25.855   -8.820  -24.805   -9.606   3.189  -2.172  N2   L3W  14  
L3W  C4   C12  C  0  1  Y  N  N  26.441  -11.063  -25.113   -8.125   1.369  -2.064  C4   L3W  15  
L3W  C5   C13  C  0  1  Y  N  N  26.417  -10.796  -26.475   -7.700   1.841  -0.811  C5   L3W  16  
L3W  N7   N3   N  0  1  Y  N  N  26.730  -11.981  -27.082   -6.742   0.959  -0.379  N7   L3W  17  
L3W  N9   N4   N  0  1  Y  N  N  26.783  -12.369  -24.871   -7.418   0.243  -2.327  N9   L3W  18  
L3W  O18  O2   O  0  1  N  N  N  26.230  -13.489  -28.820   -4.772   0.280   0.796  O18  L3W  19  
L3W  O20  O3   O  0  1  N  N  N  28.335  -15.322  -28.099   -2.457  -1.342   1.480  O20  L3W  20  
L3W  P21  P1   P  0  1  N  N  N  29.089  -16.548  -27.319   -1.476  -2.608   1.322  P21  L3W  21  
L3W  O22  O4   O  0  1  N  N  N  30.198  -15.966  -26.490   -0.916  -3.037   2.770  O22  L3W  22  
L3W  O23  O5   O  0  1  N  N  N  28.043  -17.447  -26.712   -2.222  -3.740   0.727  O23  L3W  23  
L3W  O24  O6   O  0  1  N  N  N  29.721  -17.449  -28.516   -0.243  -2.216   0.365  O24  L3W  24  
L3W  P25  P2   P  0  1  N  N  N  31.018  -17.282  -29.480    0.816  -3.066  -0.501  P25  L3W  25  
L3W  O26  O7   O  0  1  N  N  N  32.303  -17.558  -28.736    0.131  -3.530  -1.881  O26  L3W  26  
L3W  O27  O8   O  0  1  N  N  N  30.914  -16.014  -30.271    1.236  -4.259   0.268  O27  L3W  27  
L3W  C29  C14  C  0  1  N  N  N  30.801  -19.902  -29.902    3.266  -2.652  -1.484  C29  L3W  28  
L3W  C36  C15  C  0  1  N  N  R  30.793  -21.965  -32.836    6.091  -0.514  -0.621  C36  L3W  29  
L3W  O38  O9   O  0  1  N  N  N  30.825  -20.739  -32.104    4.840  -1.178  -0.338  O38  L3W  30  
L3W  N39  N5   N  0  1  N  N  N  32.112  -22.100  -33.561    6.962  -0.544   0.556  N39  L3W  31  
L3W  C40  C16  C  0  1  N  N  N  31.984  -22.530  -34.916    7.579   0.612   0.987  C40  L3W  32  
L3W  C41  C17  C  0  1  N  N  N  31.207  -21.913  -35.820    7.305   1.786   0.385  C41  L3W  33  
L3W  C42  C18  C  0  1  N  N  N  31.145  -22.272  -37.221    7.843   2.986   0.901  C42  L3W  34  
L3W  C43  C19  C  0  1  N  N  N  30.187  -21.900  -38.090    7.567   4.170   0.294  C43  L3W  35  
L3W  C44  C20  C  0  1  N  N  N  30.351  -22.303  -39.514    8.123   5.412   0.827  C44  L3W  36  
L3W  O45  O10  O  0  1  N  N  N  31.282  -22.982  -39.926    8.834   5.385   1.816  O45  L3W  37  
L3W  N46  N6   N  0  1  N  N  N  29.348  -21.819  -40.319    7.849   6.586   0.226  N46  L3W  38  
L3W  O47  O11  O  0  1  N  N  N  29.077  -21.173  -37.756    6.772   4.200  -0.811  O47  L3W  39  
L3W  C48  C21  C  0  1  N  N  N  33.104  -22.861  -32.806    7.162  -1.701   1.217  C48  L3W  40  
L3W  O49  O12  O  0  1  N  N  N  33.436  -22.478  -31.694    7.807  -1.709   2.244  O49  L3W  41  
L3W  O50  O13  O  0  1  N  N  N  29.122  -23.571  -32.175    7.385  -0.465  -2.696  O50  L3W  42  
L3W  O51  O14  O  0  1  N  N  N  29.099  -22.664  -29.810    5.390  -1.587  -3.812  O51  L3W  43  
L3W  O52  O15  O  0  1  N  N  N  27.799  -12.586  -31.279   -5.563   0.912   4.057  O52  L3W  44  
L3W  O53  O16  O  0  1  N  N  N  28.853  -11.144  -29.214   -7.718   1.219   2.627  O53  L3W  45  
L3W  N54  N7   N  0  1  N  N  N  26.163  -10.172  -22.888   -9.573   1.679  -3.984  N54  L3W  46  
L3W  H1   H1   H  0  1  N  N  N  25.621   -7.717  -26.518   -9.602   4.488  -0.561  H1   L3W  47  
L3W  H2   H2   H  0  1  N  N  N  27.217  -13.917  -26.242   -5.924  -0.835  -1.289  H2   L3W  48  
L3W  H3   H3   H  0  1  N  N  N  26.398  -11.429  -29.077   -5.797   2.071   1.146  H3   L3W  49  
L3W  H4   H4   H  0  1  N  N  N  28.860  -12.922  -28.121   -7.288  -0.566   1.645  H4   L3W  50  
L3W  H5   H5   H  0  1  N  N  N  29.089  -13.910  -30.274   -5.823  -1.048   3.414  H5   L3W  51  
L3W  H6   H6   H  0  1  N  N  N  26.402  -14.401  -30.683   -3.692   0.732   2.514  H6   L3W  52  
L3W  H7   H7   H  0  1  N  N  N  26.574  -16.112  -28.848   -3.514  -1.685   3.222  H7   L3W  53  
L3W  H8   H8   H  0  1  N  N  N  27.974  -16.123  -29.973   -4.347  -2.143   1.717  H8   L3W  54  
L3W  H9   H9   H  0  1  N  N  N  29.062  -20.585  -30.992    3.838  -0.656  -2.098  H9   L3W  55  
L3W  H10  H10  H  0  1  N  N  N  31.185  -22.446  -29.876    5.599  -3.096  -2.398  H10  L3W  56  
L3W  H11  H11  H  0  1  N  N  N  31.175  -23.835  -31.767    7.407  -2.076  -1.384  H11  L3W  57  
L3W  H12  H12  H  0  1  N  N  N  30.108  -16.257  -25.590   -0.415  -2.343   3.219  H12  L3W  58  
L3W  H13  H13  H  0  1  N  N  N  32.912  -16.843  -28.879   -0.170  -2.798  -2.437  H13  L3W  59  
L3W  H14  H14  H  0  1  N  N  N  30.293  -19.952  -28.928    3.697  -3.465  -0.900  H14  L3W  60  
L3W  H15  H15  H  0  1  N  N  N  31.857  -20.186  -29.780    2.990  -3.021  -2.472  H15  L3W  61  
L3W  H16  H16  H  0  1  N  N  N  29.995  -21.911  -33.591    5.912   0.514  -0.936  H16  L3W  62  
L3W  H17  H17  H  0  1  N  N  N  32.543  -23.399  -35.231    8.281   0.576   1.806  H17  L3W  63  
L3W  H18  H18  H  0  1  N  N  N  30.588  -21.096  -35.480    6.675   1.810  -0.492  H18  L3W  64  
L3W  H19  H19  H  0  1  N  N  N  31.940  -22.895  -37.604    8.473   2.962   1.777  H19  L3W  65  
L3W  H20  H20  H  0  1  N  N  N  29.354  -22.017  -41.299    7.283   6.608  -0.562  H20  L3W  66  
L3W  H21  H21  H  0  1  N  N  N  28.612  -21.269  -39.925    8.218   7.411   0.580  H21  L3W  67  
L3W  H22  H22  H  0  1  N  N  N  29.091  -20.981  -36.826    6.633   5.086  -1.172  H22  L3W  68  
L3W  H23  H23  H  0  1  N  N  N  33.540  -23.755  -33.227    6.747  -2.621   0.833  H23  L3W  69  
L3W  H24  H24  H  0  1  N  N  N  28.871  -24.245  -31.555    7.746  -0.919  -3.470  H24  L3W  70  
L3W  H25  H25  H  0  1  N  N  N  29.043  -22.188  -28.990    6.126  -1.863  -4.375  H25  L3W  71  
L3W  H26  H26  H  0  1  N  N  N  28.511  -12.010  -31.533   -6.340   0.942   4.631  H26  L3W  72  
L3W  H27  H27  H  0  1  N  N  N  28.903  -10.625  -28.420   -8.232   0.822   3.343  H27  L3W  73  
L3W  H28  H28  H  0  1  N  N  N  25.930   -9.305  -22.447  -10.262   2.186  -4.442  H28  L3W  74  
L3W  H29  H29  H  0  1  N  N  N  25.494  -10.868  -22.629   -9.206   0.880  -4.393  H29  L3W  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L3W  N46  C44  SING  N  N   1  
L3W  O45  C44  DOUB  N  N   2  
L3W  C44  C43  SING  N  N   3  
L3W  C43  O47  SING  N  N   4  
L3W  C43  C42  DOUB  N  Z   5  
L3W  C42  C41  SING  N  N   6  
L3W  C41  C40  DOUB  N  E   7  
L3W  C40  N39  SING  N  N   8  
L3W  N39  C36  SING  N  N   9  
L3W  N39  C48  SING  N  N  10  
L3W  C36  O38  SING  N  N  11  
L3W  C36  C34  SING  N  N  12  
L3W  C48  O49  DOUB  N  N  13  
L3W  O50  C34  SING  N  N  14  
L3W  O38  C30  SING  N  N  15  
L3W  C34  C32  SING  N  N  16  
L3W  O52  C14  SING  N  N  17  
L3W  C30  C32  SING  N  N  18  
L3W  C30  C29  SING  N  N  19  
L3W  C32  O51  SING  N  N  20  
L3W  O28  C29  SING  N  N  21  
L3W  O28  P25  SING  N  N  22  
L3W  O27  P25  DOUB  N  N  23  
L3W  C14  C16  SING  N  N  24  
L3W  C14  C12  SING  N  N  25  
L3W  C16  C19  SING  N  N  26  
L3W  C16  O18  SING  N  N  27  
L3W  P25  O26  SING  N  N  28  
L3W  P25  O24  SING  N  N  29  
L3W  O53  C12  SING  N  N  30  
L3W  C19  O20  SING  N  N  31  
L3W  C12  C10  SING  N  N  32  
L3W  O18  C10  SING  N  N  33  
L3W  O24  P21  SING  N  N  34  
L3W  C10  N7   SING  N  N  35  
L3W  O20  P21  SING  N  N  36  
L3W  P21  O23  DOUB  N  N  37  
L3W  P21  O22  SING  N  N  38  
L3W  N7   C5   SING  Y  N  39  
L3W  N7   C8   SING  Y  N  40  
L3W  N6   C5   DOUB  Y  N  41  
L3W  N6   C1   SING  Y  N  42  
L3W  C5   C4   SING  Y  N  43  
L3W  C1   N2   DOUB  Y  N  44  
L3W  C8   N9   DOUB  Y  N  45  
L3W  C4   N9   SING  Y  N  46  
L3W  C4   C3   DOUB  Y  N  47  
L3W  N2   C3   SING  Y  N  48  
L3W  C3   N54  SING  N  N  49  
L3W  C1   H1   SING  N  N  50  
L3W  C8   H2   SING  N  N  51  
L3W  C10  H3   SING  N  N  52  
L3W  C12  H4   SING  N  N  53  
L3W  C14  H5   SING  N  N  54  
L3W  C16  H6   SING  N  N  55  
L3W  C19  H7   SING  N  N  56  
L3W  C19  H8   SING  N  N  57  
L3W  C30  H9   SING  N  N  58  
L3W  C32  H10  SING  N  N  59  
L3W  C34  H11  SING  N  N  60  
L3W  O22  H12  SING  N  N  61  
L3W  O26  H13  SING  N  N  62  
L3W  C29  H14  SING  N  N  63  
L3W  C29  H15  SING  N  N  64  
L3W  C36  H16  SING  N  N  65  
L3W  C40  H17  SING  N  N  66  
L3W  C41  H18  SING  N  N  67  
L3W  C42  H19  SING  N  N  68  
L3W  N46  H20  SING  N  N  69  
L3W  N46  H21  SING  N  N  70  
L3W  O47  H22  SING  N  N  71  
L3W  C48  H23  SING  N  N  72  
L3W  O50  H24  SING  N  N  73  
L3W  O51  H25  SING  N  N  74  
L3W  O52  H26  SING  N  N  75  
L3W  O53  H27  SING  N  N  76  
L3W  N54  H28  SING  N  N  77  
L3W  N54  H29  SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L3W  InChI             InChI                 1.03   "InChI=1S/C21H29N7O16P2/c22-17-12-19(25-6-24-17)28(7-26-12)21-16(34)14(32)11(43-21)5-41-46(38,39)44-45(36,37)40-4-10-13(31)15(33)20(42-10)27(8-29)3-1-2-9(30)18(23)35/h1-3,6-8,10-11,13-16,20-21,30-34H,4-5H2,(H2,23,35)(H,36,37)(H,38,39)(H2,22,24,25)/b3-1+,9-2-/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1"  
L3W  InChIKey          InChI                 1.03   QSTZUQWNOOUKGF-OTTADCDWSA-N  
L3W  SMILES_CANONICAL  CACTVS                3.385  "NC(=O)\C(O)=C\C=C\N(C=O)[C@@H]1O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@@H](O)[C@H]1O"  
L3W  SMILES            CACTVS                3.385  "NC(=O)C(O)=CC=CN(C=O)[CH]1O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH](O)[CH]1O"  
L3W  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N(/C=C/C=C(/C(=O)N)\O)C=O)O)O)O)O)N"  
L3W  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N(C=CC=C(C(=O)N)O)C=O)O)O)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          L3W
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[[(1~{E},3~{Z})-5-azanyl-4-oxidanyl-5-oxidanylidene-penta-1,3-dienyl]-methanoyl-amino]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L3W  "Create component"  2019-07-18  EBI   
L3W  "Initial release"   2020-07-22  RCSB  
##
