data_S3W
#

_chem_comp.id                                   S3W
_chem_comp.name                                 "N-[(2R,3R,4S,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]-N'-[(1-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-methoxytetrahydro-2H-pyran-2-yl]methyl}-1H-1,2,3-triazol-4-yl)methyl]butanediamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H33 N5 O12"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-12-18
_chem_comp.pdbx_modified_date                   2020-10-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       535.502
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S3W
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VAW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S3W  N5    N1   N  0  1  Y  N  N  63.214  31.974   3.380    3.323   1.361   0.354  N5    S3W   1  
S3W  N4    N2   N  0  1  Y  N  N  63.588  33.060   2.747    4.372   0.712   0.723  N4    S3W   2  
S3W  N3    N3   N  0  1  Y  N  N  64.906  32.939   2.507    4.470  -0.387   0.061  N3    S3W   3  
S3W  N1    N4   N  0  1  N  N  N  64.198  27.342   9.775   -5.895   0.644  -0.486  N1    S3W   4  
S3W  N2    N5   N  0  1  N  N  N  65.094  29.696   5.214    0.269   0.629  -0.514  N2    S3W   5  
S3W  C17   C1   C  0  1  N  N  S  66.253  36.259   2.580    7.996  -1.772   0.040  C17   S3W   6  
S3W  C16   C2   C  0  1  N  N  S  67.278  37.042   3.391    9.359  -1.085  -0.093  C16   S3W   7  
S3W  C18   C3   C  0  1  N  N  R  66.537  34.763   2.673    6.893  -0.711   0.013  C18   S3W   8  
S3W  C14   C4   C  0  1  N  N  S  68.855  35.131   3.064    8.351   0.937   0.968  C14   S3W   9  
S3W  C15   C5   C  0  1  N  N  R  68.696  36.645   3.002    9.512  -0.058   1.033  C15   S3W  10  
S3W  C20   C6   C  0  1  N  N  N  69.160  33.406   4.632    7.498   2.751  -0.346  C20   S3W  11  
S3W  C11   C7   C  0  1  N  N  N  64.157  29.787   4.113    1.425   1.049  -1.310  C11   S3W  12  
S3W  C12   C8   C  0  1  Y  N  N  64.288  31.155   3.528    2.694   0.662  -0.597  C12   S3W  13  
S3W  C13   C9   C  0  1  Y  N  N  65.369  31.782   2.988    3.423  -0.462  -0.793  C13   S3W  14  
S3W  C19   C10  C  0  1  N  N  N  65.636  33.958   1.757    5.533  -1.384   0.205  C19   S3W  15  
S3W  C4    C11  C  0  1  N  N  R  62.123  23.718  10.498   -9.808  -0.616   0.443  C4    S3W  16  
S3W  C3    C12  C  0  1  N  N  S  62.971  24.295  11.627   -9.401   0.773   0.945  C3    S3W  17  
S3W  C5    C13  C  0  1  N  N  S  62.761  24.059   9.151   -8.619  -1.570   0.584  C5    S3W  18  
S3W  C1    C14  C  0  1  N  N  R  63.923  25.961  10.034   -7.050   0.224   0.310  C1    S3W  19  
S3W  C2    C15  C  0  1  N  N  R  63.250  25.776  11.391   -8.176   1.250   0.158  C2    S3W  20  
S3W  C6    C16  C  0  1  N  N  N  62.199  23.499   7.866   -8.998  -2.944   0.030  C6    S3W  21  
S3W  C7    C17  C  0  1  N  N  N  65.210  27.762   9.007   -4.646   0.401  -0.042  C7    S3W  22  
S3W  C8    C18  C  0  1  N  N  N  65.367  29.263   8.893   -3.457   0.833  -0.862  C8    S3W  23  
S3W  C9    C19  C  0  1  N  N  N  65.823  29.717   7.510   -2.168   0.440  -0.138  C9    S3W  24  
S3W  C10   C20  C  0  1  N  N  N  64.707  29.720   6.490   -0.980   0.872  -0.957  C10   S3W  25  
S3W  O18   O1   O  0  1  N  N  N  67.884  34.501   2.251    7.113   0.229   1.066  O18   S3W  26  
S3W  O14   O2   O  0  1  N  N  N  68.724  34.737   4.398    8.398   1.644  -0.273  O14   S3W  27  
S3W  O15   O3   O  0  1  N  N  N  69.633  37.266   3.874   10.749   0.641   0.877  O15   S3W  28  
S3W  O16   O4   O  0  1  N  N  N  67.094  38.438   3.185   10.398  -2.061   0.003  O16   S3W  29  
S3W  O17   O5   O  0  1  N  N  N  64.944  36.515   3.078    7.812  -2.681  -1.047  O17   S3W  30  
S3W  O5    O6   O  0  1  N  N  N  63.060  25.461   8.997   -7.505  -1.052  -0.146  O5    S3W  31  
S3W  O2    O7   O  0  1  N  N  N  64.098  26.283  12.412   -7.744   2.513   0.667  O2    S3W  32  
S3W  O3    O8   O  0  1  N  N  N  62.350  24.098  12.889  -10.481   1.687   0.749  O3    S3W  33  
S3W  O4    O9   O  0  1  N  N  N  60.787  24.210  10.584  -10.193  -0.533  -0.931  O4    S3W  34  
S3W  O6    O10  O  0  1  N  N  N  63.226  23.319   6.897   -7.931  -3.865   0.267  O6    S3W  35  
S3W  O10   O11  O  0  1  N  N  N  63.528  29.769   6.831   -1.147   1.440  -2.016  O10   S3W  36  
S3W  O7    O12  O  0  1  N  N  N  65.987  26.988   8.455   -4.478  -0.167   1.016  O7    S3W  37  
S3W  HN1   H1   H  0  1  N  N  N  63.602  28.029  10.190   -6.029   1.098  -1.333  HN1   S3W  38  
S3W  HN2   H2   H  0  1  N  N  N  66.069  29.612   5.009    0.403   0.175   0.333  HN2   S3W  39  
S3W  HC17  H3   H  0  0  N  N  N  66.325  36.568   1.527    7.953  -2.318   0.983  HC17  S3W  40  
S3W  HC16  H4   H  0  0  N  N  N  67.132  36.803   4.455    9.420  -0.580  -1.057  HC16  S3W  41  
S3W  HC18  H5   H  0  0  N  N  N  66.389  34.431   3.711    6.911  -0.193  -0.946  HC18  S3W  42  
S3W  HC14  H6   H  0  0  N  N  N  69.861  34.878   2.698    8.432   1.645   1.793  HC14  S3W  43  
S3W  HC15  H7   H  0  0  N  N  N  68.877  36.972   1.967    9.501  -0.569   1.996  HC15  S3W  44  
S3W  H20B  H8   H  0  0  N  N  N  69.031  33.159   5.696    7.737   3.467   0.441  H20B  S3W  45  
S3W  H20C  H9   H  0  0  N  N  N  68.565  32.712   4.020    7.595   3.235  -1.318  H20C  S3W  46  
S3W  H20A  H10  H  0  0  N  N  N  70.222  33.315   4.361    6.475   2.397  -0.216  H20A  S3W  47  
S3W  H11A  H11  H  0  0  N  N  N  63.131  29.631   4.478    1.391   0.561  -2.284  H11A  S3W  48  
S3W  H11B  H12  H  0  0  N  N  N  64.395  29.028   3.353    1.399   2.131  -1.445  H11B  S3W  49  
S3W  HC13  H13  H  0  0  N  N  N  66.386  31.420   2.955    3.211  -1.259  -1.491  HC13  S3W  50  
S3W  H19A  H14  H  0  0  N  N  N  66.250  33.468   0.988    5.484  -1.826   1.201  H19A  S3W  51  
S3W  H19B  H15  H  0  0  N  N  N  64.916  34.635   1.275    5.404  -2.164  -0.545  H19B  S3W  52  
S3W  HC4   H16  H  0  1  N  N  N  62.115  22.623  10.603  -10.645  -0.986   1.034  HC4   S3W  53  
S3W  HC3   H17  H  0  1  N  N  N  63.937  23.769  11.619   -9.156   0.720   2.006  HC3   S3W  54  
S3W  HC5   H18  H  0  1  N  N  N  63.751  23.585   9.219   -8.351  -1.664   1.637  HC5   S3W  55  
S3W  HC1   H19  H  0  1  N  N  N  64.864  25.392  10.034   -6.762   0.153   1.359  HC1   S3W  56  
S3W  HC2   H20  H  0  1  N  N  N  62.294  26.319  11.388   -8.437   1.350  -0.896  HC2   S3W  57  
S3W  HC6B  H21  H  0  0  N  N  N  61.447  24.196   7.468   -9.902  -3.299   0.525  HC6B  S3W  58  
S3W  HC6A  H22  H  0  0  N  N  N  61.726  22.528   8.073   -9.179  -2.866  -1.042  HC6A  S3W  59  
S3W  HC8B  H23  H  0  0  N  N  N  66.111  29.594   9.632   -3.490   0.345  -1.836  HC8B  S3W  60  
S3W  HC8A  H24  H  0  0  N  N  N  64.397  29.733   9.113   -3.483   1.915  -0.996  HC8A  S3W  61  
S3W  HC9B  H25  H  0  0  N  N  N  66.614  29.037   7.161   -2.135   0.928   0.836  HC9B  S3W  62  
S3W  HC9A  H26  H  0  0  N  N  N  66.226  30.737   7.591   -2.142  -0.642  -0.003  HC9A  S3W  63  
S3W  HO15  H27  H  0  0  N  N  N  69.529  38.209   3.831   10.910   1.311   1.555  HO15  S3W  64  
S3W  HO16  H28  H  0  0  N  N  N  67.736  38.921   3.693   11.290  -1.695  -0.073  HO16  S3W  65  
S3W  HO17  H29  H  0  0  N  N  N  64.760  37.445   3.023    8.477  -3.381  -1.092  HO17  S3W  66  
S3W  HO2   H30  H  0  1  N  N  N  63.680  26.168  13.257   -6.967   2.873   0.217  HO2   S3W  67  
S3W  HO3   H31  H  0  1  N  N  N  62.898  24.466  13.573  -10.292   2.588   1.045  HO3   S3W  68  
S3W  HO4   H32  H  0  1  N  N  N  60.419  23.983  11.430  -10.939   0.059  -1.095  HO4   S3W  69  
S3W  HO6   H33  H  0  1  N  N  N  62.851  22.967   6.099   -8.103  -4.759  -0.059  HO6   S3W  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S3W  C19  N3    SING  N  N   1  
S3W  C19  C18   SING  N  N   2  
S3W  O18  C18   SING  N  N   3  
S3W  O18  C14   SING  N  N   4  
S3W  N3   N4    SING  Y  N   5  
S3W  N3   C13   SING  Y  N   6  
S3W  C17  C18   SING  N  N   7  
S3W  C17  O17   SING  N  N   8  
S3W  C17  C16   SING  N  N   9  
S3W  N4   N5    DOUB  Y  N  10  
S3W  C13  C12   DOUB  Y  N  11  
S3W  C15  C14   SING  N  N  12  
S3W  C15  C16   SING  N  N  13  
S3W  C15  O15   SING  N  N  14  
S3W  C14  O14   SING  N  N  15  
S3W  O16  C16   SING  N  N  16  
S3W  N5   C12   SING  Y  N  17  
S3W  C12  C11   SING  N  N  18  
S3W  C11  N2    SING  N  N  19  
S3W  O14  C20   SING  N  N  20  
S3W  N2   C10   SING  N  N  21  
S3W  C10  O10   DOUB  N  N  22  
S3W  C10  C9    SING  N  N  23  
S3W  O6   C6    SING  N  N  24  
S3W  C9   C8    SING  N  N  25  
S3W  C6   C5    SING  N  N  26  
S3W  O7   C7    DOUB  N  N  27  
S3W  C8   C7    SING  N  N  28  
S3W  O5   C5    SING  N  N  29  
S3W  O5   C1    SING  N  N  30  
S3W  C7   N1    SING  N  N  31  
S3W  C5   C4    SING  N  N  32  
S3W  N1   C1    SING  N  N  33  
S3W  C1   C2    SING  N  N  34  
S3W  C4   O4    SING  N  N  35  
S3W  C4   C3    SING  N  N  36  
S3W  C2   C3    SING  N  N  37  
S3W  C2   O2    SING  N  N  38  
S3W  C3   O3    SING  N  N  39  
S3W  N1   HN1   SING  N  N  40  
S3W  N2   HN2   SING  N  N  41  
S3W  C17  HC17  SING  N  N  42  
S3W  C16  HC16  SING  N  N  43  
S3W  C18  HC18  SING  N  N  44  
S3W  C14  HC14  SING  N  N  45  
S3W  C15  HC15  SING  N  N  46  
S3W  C20  H20B  SING  N  N  47  
S3W  C20  H20C  SING  N  N  48  
S3W  C20  H20A  SING  N  N  49  
S3W  C11  H11A  SING  N  N  50  
S3W  C11  H11B  SING  N  N  51  
S3W  C13  HC13  SING  N  N  52  
S3W  C19  H19A  SING  N  N  53  
S3W  C19  H19B  SING  N  N  54  
S3W  C4   HC4   SING  N  N  55  
S3W  C3   HC3   SING  N  N  56  
S3W  C5   HC5   SING  N  N  57  
S3W  C1   HC1   SING  N  N  58  
S3W  C2   HC2   SING  N  N  59  
S3W  C6   HC6B  SING  N  N  60  
S3W  C6   HC6A  SING  N  N  61  
S3W  C8   HC8B  SING  N  N  62  
S3W  C8   HC8A  SING  N  N  63  
S3W  C9   HC9B  SING  N  N  64  
S3W  C9   HC9A  SING  N  N  65  
S3W  O15  HO15  SING  N  N  66  
S3W  O16  HO16  SING  N  N  67  
S3W  O17  HO17  SING  N  N  68  
S3W  O2   HO2   SING  N  N  69  
S3W  O3   HO3   SING  N  N  70  
S3W  O4   HO4   SING  N  N  71  
S3W  O6   HO6   SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S3W  SMILES            ACDLabs               12.01  "n2c(CNC(CCC(NC1C(C(C(O)C(CO)O1)O)O)=O)=O)cn(n2)CC3C(O)C(C(C(OC)O3)O)O"  
S3W  InChI             InChI                 1.03   "InChI=1S/C20H33N5O12/c1-35-20-18(34)16(32)13(29)9(37-20)6-25-5-8(23-24-25)4-21-11(27)2-3-12(28)22-19-17(33)15(31)14(30)10(7-26)36-19/h5,9-10,13-20,26,29-34H,2-4,6-7H2,1H3,(H,21,27)(H,22,28)/t9-,10+,13-,14+,15+,16+,17-,18-,19-,20+/m1/s1"  
S3W  InChIKey          InChI                 1.03   ZVODTTTYSJJUKY-SRYZRXLVSA-N  
S3W  SMILES_CANONICAL  CACTVS                3.385  "CO[C@H]1O[C@H](Cn2cc(CNC(=O)CCC(=O)N[C@@H]3O[C@@H](CO)[C@H](O)[C@H](O)[C@H]3O)nn2)[C@@H](O)[C@H](O)[C@H]1O"  
S3W  SMILES            CACTVS                3.385  "CO[CH]1O[CH](Cn2cc(CNC(=O)CCC(=O)N[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)nn2)[CH](O)[CH](O)[CH]1O"  
S3W  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)Cn2cc(nn2)CNC(=O)CCC(=O)N[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)O)O)O"  
S3W  SMILES            "OpenEye OEToolkits"  2.0.7  "COC1C(C(C(C(O1)Cn2cc(nn2)CNC(=O)CCC(=O)NC3C(C(C(C(O3)CO)O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S3W  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(2R,3R,4S,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]-N'-[(1-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-methoxytetrahydro-2H-pyran-2-yl]methyl}-1H-1,2,3-triazol-4-yl)methyl]butanediamide (non-preferred name)"  
S3W  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}'-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-~{N}-[[1-[[(2~{R},3~{S},4~{S},5~{R},6~{S})-6-methoxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl]-1,2,3-triazol-4-yl]methyl]butanediamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S3W  "Create component"  2019-12-18  RCSB  
S3W  "Initial release"   2020-10-28  RCSB  
##
