data_U5W
#

_chem_comp.id                                   U5W
_chem_comp.name                                 "1,25-Dihydroxy-16-ene-20-cyclopropyl-vitamin D3"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H42 O3"
_chem_comp.mon_nstd_parent_comp_id              VD3
_chem_comp.pdbx_synonyms                        "(1R,3S,5Z)-5-[(2E)-2-[(3aS,7aS)-7a-methyl-1-[1-(4-methyl-4-oxidanyl-pentyl)cyclopropyl]-3a,5,6,7-tetrahydro-3H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-22
_chem_comp.pdbx_modified_date                   2022-02-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       426.631
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U5W
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7BNS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U5W  C17   C1   C  0  1  N  N  N   1.545  39.609  38.348    5.196  -0.898   0.835  C1   U5W   1  
U5W  O     O1   O  0  1  N  N  N  -0.350  41.958  39.890    8.313   1.062  -1.248  O1   U5W   2  
U5W  C1    C2   C  0  1  N  N  S   2.054  41.012  38.678    6.104  -1.731  -0.047  C2   U5W   3  
U5W  O2    O2   O  0  1  N  N  N   3.980  28.734  34.407   -8.309  -1.253  -0.007  O2   U5W   4  
U5W  C2    C3   C  0  1  N  N  N   1.199  42.095  38.042    7.404  -0.952  -0.273  C3   U5W   5  
U5W  C3    C4   C  0  1  N  N  R  -0.247  41.928  38.457    7.091   0.405  -0.905  C4   U5W   6  
U5W  C4    C5   C  0  1  N  N  N  -0.790  40.619  37.915    6.308   1.271   0.087  C5   U5W   7  
U5W  C5    C6   C  0  1  N  N  N   0.043  39.429  38.306    5.045   0.528   0.476  C6   U5W   8  
U5W  C7    C7   C  0  1  N  N  N  -0.502  38.222  38.518    3.843   1.139   0.494  C7   U5W   9  
U5W  C8    C8   C  0  1  N  N  N   0.219  37.037  38.835    2.645   0.387   0.876  C8   U5W  10  
U5W  C9    C9   C  0  1  N  N  N  -0.408  35.860  38.963    1.457   0.991   0.894  C9   U5W  11  
U5W  C10   C10  C  0  1  N  N  N  -1.883  35.681  38.743    1.269   2.457   0.523  C10  U5W  12  
U5W  C11   C11  C  0  1  N  N  N  -2.187  34.549  37.756    0.168   2.621  -0.523  C11  U5W  13  
U5W  C12   C12  C  0  1  N  N  N  -1.322  33.314  37.995   -1.106   1.841  -0.148  C12  U5W  14  
U5W  C13   C13  C  0  1  N  N  S   0.179  33.628  38.051   -0.717   0.403   0.023  C13  U5W  15  
U5W  C21   C14  C  0  1  N  N  N   0.646  34.337  36.764    0.170   0.029  -1.166  C14  U5W  16  
U5W  C14   C15  C  0  1  N  N  S   0.286  34.557  39.284    0.189   0.282   1.275  C15  U5W  17  
U5W  C15   C16  C  0  1  N  N  N   1.770  34.486  39.658    0.233  -1.245   1.361  C16  U5W  18  
U5W  C16   C17  C  0  1  N  N  N   2.097  33.076  39.259   -1.171  -1.641   0.913  C17  U5W  19  
U5W  C28   C18  C  0  1  N  N  N   1.184  32.562  38.441   -1.709  -0.684   0.185  C18  U5W  20  
U5W  C27   C19  C  0  1  N  N  N   1.234  31.090  38.034   -3.098  -0.701  -0.398  C19  U5W  21  
U5W  C6    C20  C  0  1  N  N  N   1.081  30.890  36.505   -4.187  -0.068   0.471  C20  U5W  22  
U5W  C19   C21  C  0  1  N  N  N   2.245  39.000  37.136    4.558  -1.426   1.879  C    U5W  23  
U5W  O1    O3   O  0  1  N  N  N   3.399  41.158  38.224    5.465  -1.978  -1.300  O    U5W  24  
U5W  C26   C22  C  0  1  N  N  N   2.451  30.756  35.841   -5.552  -0.279  -0.188  C21  U5W  25  
U5W  C18   C23  C  0  1  N  N  N   2.342  30.487  34.341   -6.640   0.353   0.682  C22  U5W  26  
U5W  C20   C24  C  0  1  N  N  N   3.615  29.934  33.699   -8.005   0.142   0.023  C23  U5W  27  
U5W  C22   C25  C  0  1  N  N  N   3.388  29.563  32.243   -7.972   0.688  -1.405  C24  U5W  28  
U5W  C23   C26  C  0  1  N  N  N   4.772  30.912  33.830   -9.078   0.881   0.826  C25  U5W  29  
U5W  C24   C27  C  0  1  N  N  N   0.556  30.085  38.933   -3.489  -1.905  -1.257  C26  U5W  30  
U5W  C25   C28  C  0  1  N  N  N   2.043  30.082  38.812   -3.229  -0.549  -1.915  C27  U5W  31  
U5W  HO    H2   H  0  1  N  N  N  -0.007  42.782  40.215    8.191   1.931  -1.655  H2   U5W  32  
U5W  H11   H3   H  0  1  N  N  N   2.019  41.141  39.770    6.325  -2.678   0.446  H3   U5W  33  
U5W  H4    H4   H  0  1  N  N  N   4.128  28.939  35.323   -8.347  -1.667   0.866  H4   U5W  34  
U5W  H21   H5   H  0  1  N  N  N   1.274  42.021  36.947    7.907  -0.800   0.682  H5   U5W  35  
U5W  H22   H6   H  0  1  N  N  N   1.559  43.082  38.369    8.055  -1.520  -0.938  H6   U5W  36  
U5W  H3    H7   H  0  1  N  N  N  -0.833  42.754  38.027    6.494   0.256  -1.805  H7   U5W  37  
U5W  H41   H8   H  0  1  N  N  N  -0.820  40.680  36.817    6.915   1.454   0.974  H8   U5W  38  
U5W  H42   H9   H  0  1  N  N  N  -1.809  40.475  38.302    6.046   2.220  -0.382  H9   U5W  39  
U5W  H7    H10  H  0  1  N  N  N  -1.576  38.143  38.442    3.763   2.182   0.227  H10  U5W  40  
U5W  H8    H11  H  0  1  N  N  N   1.289  37.087  38.975    2.725  -0.656   1.143  H11  U5W  41  
U5W  H101  H12  H  0  0  N  N  N  -2.298  36.619  38.346    1.001   3.021   1.416  H12  U5W  42  
U5W  H102  H13  H  0  0  N  N  N  -2.359  35.448  39.707    2.204   2.848   0.121  H13  U5W  43  
U5W  H111  H14  H  0  0  N  N  N  -2.005  34.914  36.734   -0.079   3.679  -0.614  H14  U5W  44  
U5W  H112  H15  H  0  0  N  N  N  -3.244  34.264  37.861    0.535   2.260  -1.483  H15  U5W  45  
U5W  H121  H16  H  0  0  N  N  N  -1.620  32.859  38.951   -1.516   2.227   0.785  H16  U5W  46  
U5W  H122  H17  H  0  0  N  N  N  -1.499  32.600  37.178   -1.844   1.933  -0.945  H17  U5W  47  
U5W  H181  H18  H  0  0  N  N  N   1.723  34.549  36.832    1.059   0.658  -1.168  H18  U5W  48  
U5W  H182  H19  H  0  0  N  N  N   0.454  33.687  35.897    0.465  -1.017  -1.085  H19  U5W  49  
U5W  H183  H20  H  0  0  N  N  N   0.093  35.280  36.644   -0.384   0.179  -2.093  H20  U5W  50  
U5W  H14   H21  H  0  1  N  N  N  -0.277  34.076  40.098   -0.271   0.733   2.154  H21  U5W  51  
U5W  H151  H22  H  0  0  N  N  N   1.924  34.647  40.735    0.985  -1.650   0.683  H22  U5W  52  
U5W  H152  H23  H  0  0  N  N  N   2.366  35.215  39.089    0.422  -1.570   2.384  H23  U5W  53  
U5W  H161  H24  H  0  0  N  N  N   2.972  32.541  39.597   -1.659  -2.571   1.164  H24  U5W  54  
U5W  H221  H27  H  0  0  N  N  N   0.555  31.757  36.078   -4.182  -0.536   1.456  H27  U5W  55  
U5W  H222  H28  H  0  0  N  N  N   0.497  29.977  36.316   -3.994   1.000   0.575  H28  U5W  56  
U5W  H191  H29  H  0  0  N  N  N   3.009  39.559  36.616    4.683  -2.473   2.115  H29  U5W  57  
U5W  H192  H30  H  0  0  N  N  N   1.976  38.010  36.798    3.917  -0.808   2.490  H30  U5W  58  
U5W  H32   H32  H  0  1  N  N  N   3.941  40.484  38.617    4.626  -2.454  -1.227  H32  U5W  59  
U5W  H231  H33  H  0  0  N  N  N   2.993  29.922  36.312   -5.556   0.188  -1.172  H33  U5W  60  
U5W  H232  H34  H  0  0  N  N  N   3.011  31.690  35.993   -5.744  -1.347  -0.291  H34  U5W  61  
U5W  H241  H35  H  0  0  N  N  N   2.088  31.433  33.840   -6.636  -0.114   1.667  H35  U5W  62  
U5W  H242  H36  H  0  0  N  N  N   1.533  29.759  34.181   -6.448   1.421   0.786  H36  U5W  63  
U5W  H261  H37  H  0  0  N  N  N   2.548  28.856  32.171   -7.740   1.753  -1.382  H37  U5W  64  
U5W  H262  H38  H  0  0  N  N  N   3.154  30.470  31.666   -7.207   0.163  -1.977  H38  U5W  65  
U5W  H263  H39  H  0  0  N  N  N   4.297  29.095  31.838   -8.944   0.538  -1.875  H39  U5W  66  
U5W  H273  H40  H  0  0  N  N  N   4.919  31.167  34.890   -8.847   1.945   0.850  H40  U5W  67  
U5W  H271  H41  H  0  0  N  N  N   5.688  30.451  33.433  -10.051   0.730   0.357  H41  U5W  68  
U5W  H272  H42  H  0  0  N  N  N   4.546  31.826  33.261   -9.102   0.491   1.844  H42  U5W  69  
U5W  H211  H43  H  0  0  N  N  N   0.082  30.417  39.868   -2.742  -2.686  -1.399  H43  U5W  70  
U5W  H212  H44  H  0  0  N  N  N  -0.032  29.265  38.495   -4.523  -2.248  -1.201  H44  U5W  71  
U5W  H45   H45  H  0  1  N  N  N   2.549  29.260  38.285   -4.090   0.000  -2.294  H45  U5W  72  
U5W  H46   H46  H  0  1  N  N  N   2.663  30.412  39.659   -2.310  -0.438  -2.491  H46  U5W  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U5W  C22  C20   SING  N  N   1  
U5W  C20  C23   SING  N  N   2  
U5W  C20  C18   SING  N  N   3  
U5W  C20  O2    SING  N  N   4  
U5W  C18  C26   SING  N  N   5  
U5W  C26  C6    SING  N  N   6  
U5W  C6   C27   SING  N  N   7  
U5W  C21  C13   SING  N  N   8  
U5W  C19  C17   DOUB  N  N   9  
U5W  C11  C12   SING  N  N  10  
U5W  C11  C10   SING  N  N  11  
U5W  C4   C5    SING  N  N  12  
U5W  C4   C3    SING  N  N  13  
U5W  C12  C13   SING  N  N  14  
U5W  C27  C28   SING  N  N  15  
U5W  C27  C25   SING  N  N  16  
U5W  C27  C24   SING  N  N  17  
U5W  C2   C3    SING  N  N  18  
U5W  C2   C1    SING  N  N  19  
U5W  C13  C28   SING  N  N  20  
U5W  C13  C14   SING  N  N  21  
U5W  O1   C1    SING  N  N  22  
U5W  C5   C17   SING  N  N  23  
U5W  C5   C7    DOUB  N  Z  24  
U5W  C17  C1    SING  N  N  25  
U5W  C28  C16   DOUB  N  N  26  
U5W  C3   O     SING  N  N  27  
U5W  C7   C8    SING  N  N  28  
U5W  C10  C9    SING  N  N  29  
U5W  C25  C24   SING  N  N  30  
U5W  C8   C9    DOUB  N  E  31  
U5W  C9   C14   SING  N  N  32  
U5W  C16  C15   SING  N  N  33  
U5W  C14  C15   SING  N  N  34  
U5W  O    HO    SING  N  N  35  
U5W  C1   H11   SING  N  N  36  
U5W  O2   H4    SING  N  N  37  
U5W  C2   H21   SING  N  N  38  
U5W  C2   H22   SING  N  N  39  
U5W  C3   H3    SING  N  N  40  
U5W  C4   H41   SING  N  N  41  
U5W  C4   H42   SING  N  N  42  
U5W  C7   H7    SING  N  N  43  
U5W  C8   H8    SING  N  N  44  
U5W  C10  H101  SING  N  N  45  
U5W  C10  H102  SING  N  N  46  
U5W  C11  H111  SING  N  N  47  
U5W  C11  H112  SING  N  N  48  
U5W  C12  H121  SING  N  N  49  
U5W  C12  H122  SING  N  N  50  
U5W  C21  H181  SING  N  N  51  
U5W  C21  H182  SING  N  N  52  
U5W  C21  H183  SING  N  N  53  
U5W  C14  H14   SING  N  N  54  
U5W  C15  H151  SING  N  N  55  
U5W  C15  H152  SING  N  N  56  
U5W  C16  H161  SING  N  N  57  
U5W  C6   H221  SING  N  N  58  
U5W  C6   H222  SING  N  N  59  
U5W  C19  H191  SING  N  N  60  
U5W  C19  H192  SING  N  N  61  
U5W  O1   H32   SING  N  N  62  
U5W  C26  H231  SING  N  N  63  
U5W  C26  H232  SING  N  N  64  
U5W  C18  H241  SING  N  N  65  
U5W  C18  H242  SING  N  N  66  
U5W  C22  H261  SING  N  N  67  
U5W  C22  H262  SING  N  N  68  
U5W  C22  H263  SING  N  N  69  
U5W  C23  H273  SING  N  N  70  
U5W  C23  H271  SING  N  N  71  
U5W  C23  H272  SING  N  N  72  
U5W  C24  H211  SING  N  N  73  
U5W  C24  H212  SING  N  N  74  
U5W  C25  H45   SING  N  N  75  
U5W  C25  H46   SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U5W  InChI             InChI                 1.03   "InChI=1S/C28H42O3/c1-19-21(17-22(29)18-24(19)30)9-8-20-7-5-13-27(4)23(20)10-11-25(27)28(15-16-28)14-6-12-26(2,3)31/h8-9,11,22-24,29-31H,1,5-7,10,12-18H2,2-4H3/b20-8+,21-9-/t22-,23+,24+,27+/m1/s1"  
U5W  InChIKey          InChI                 1.03   WFPGMTGDYDCQLS-LMQQRSCXSA-N  
U5W  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(O)CCCC1(CC1)C2=CC[C@H]3C(\CCC[C@]23C)=C\C=C/4C[C@@H](O)C[C@H](O)C/4=C"  
U5W  SMILES            CACTVS                3.385  "CC(C)(O)CCCC1(CC1)C2=CC[CH]3C(CCC[C]23C)=CC=C4C[CH](O)C[CH](O)C4=C"  
U5W  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@]12CCC/C(=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)/[C@@H]1CC=C2C4(CC4)CCCC(C)(C)O"  
U5W  SMILES            "OpenEye OEToolkits"  2.0.7  "CC12CCCC(=CC=C3CC(CC(C3=C)O)O)C1CC=C2C4(CC4)CCCC(C)(C)O"  
#
_pdbx_chem_comp_identifier.comp_id          U5W
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(3~{a}~{S},7~{a}~{S})-7~{a}-methyl-1-[1-(4-methyl-4-oxidanyl-pentyl)cyclopropyl]-3~{a},5,6,7-tetrahydro-3~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     U5W
_pdbx_chem_comp_synonyms.name        "(1R,3S,5Z)-5-[(2E)-2-[(3aS,7aS)-7a-methyl-1-[1-(4-methyl-4-oxidanyl-pentyl)cyclopropyl]-3a,5,6,7-tetrahydro-3H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U5W  "Create component"      2021-01-22  PDBE  
U5W  "Modify aromatic_flag"  2021-08-12  PDBE  
U5W  "Initial release"       2022-03-02  RCSB  
##
