data_9PX
#

_chem_comp.id                                   9PX
_chem_comp.name                                 "1-deoxy-1-[(4aS)-4a-[(methoxycarbonyl)peroxy]-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H25 N4 O13 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-06-20
_chem_comp.pdbx_modified_date                   2019-06-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       548.395
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9PX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6A3D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9PX  CAA  C1   C  0  1  N  N  N  28.056   -8.861  29.561  -3.130   5.135  -1.484  CAA  9PX   1  
9PX  CAB  C2   C  0  1  Y  N  N  28.092   -8.887  28.163  -2.575   3.815  -1.015  CAB  9PX   2  
9PX  CAC  C3   C  0  1  Y  N  N  29.318   -8.869  27.507  -3.109   2.631  -1.495  CAC  9PX   3  
9PX  CAD  C4   C  0  1  Y  N  N  29.362   -8.898  26.115  -2.597   1.423  -1.062  CAD  9PX   4  
9PX  CAE  C5   C  0  1  Y  N  N  28.183   -8.900  25.354  -1.534   1.391  -0.156  CAE  9PX   5  
9PX  CAF  C6   C  0  1  Y  N  N  26.968   -8.954  26.025  -1.010   2.582   0.323  CAF  9PX   6  
9PX  CAG  C7   C  0  1  Y  N  N  26.918   -8.932  27.416  -1.528   3.788  -0.112  CAG  9PX   7  
9PX  CAH  C8   C  0  1  N  N  N  25.677   -8.940  28.042  -0.958   5.081   0.412  CAH  9PX   8  
9PX  CAJ  C9   C  0  1  N  N  N  29.417   -8.980  23.380  -1.635  -0.990  -0.048  CAJ  9PX   9  
9PX  CAL  C10  C  0  1  N  N  N  30.662   -9.049  21.412  -1.567  -3.292  -0.296  CAL  9PX  10  
9PX  CAO  C11  C  0  1  N  N  N  31.661   -8.842  23.582  -3.415  -2.220  -1.240  CAO  9PX  11  
9PX  CAQ  C12  C  0  1  N  N  S  30.409   -8.580  24.151  -3.038  -0.930  -0.583  CAQ  9PX  12  
9PX  CAS  C13  C  0  1  N  N  N  26.967   -9.087  23.195   0.267   0.131   0.998  CAS  9PX  13  
9PX  CAT  C14  C  0  1  N  N  S  26.602  -10.540  22.913   1.438   0.032   0.018  CAT  9PX  14  
9PX  CAU  C15  C  0  1  N  N  S  25.243  -10.638  22.191   2.753  -0.002   0.799  CAU  9PX  15  
9PX  CAV  C16  C  0  1  N  N  R  24.090  -10.229  23.069   3.925  -0.101  -0.181  CAV  9PX  16  
9PX  CAW  C17  C  0  1  N  N  N  22.960  -11.154  22.625   5.240  -0.137   0.600  CAW  9PX  17  
9PX  CBF  C18  C  0  1  N  N  N  31.802   -5.892  25.517  -6.046  -0.507   1.165  CBF  9PX  18  
9PX  CBK  C19  C  0  1  N  N  N  30.984   -5.287  27.538  -8.271  -0.285   1.996  CBK  9PX  19  
9PX  NAI  N1   N  0  1  N  N  N  28.222   -8.965  23.997  -0.993   0.165   0.250  NAI  9PX  20  
9PX  NAK  N2   N  0  1  N  N  N  29.483   -9.075  22.040  -1.033  -2.138   0.120  NAK  9PX  21  
9PX  NAN  N3   N  0  1  N  N  N  31.808   -8.945  22.193  -2.684  -3.329  -1.042  NAN  9PX  22  
9PX  NAR  N4   N  0  1  N  N  N  30.544   -8.895  25.485  -3.146   0.206  -1.504  NAR  9PX  23  
9PX  OAM  O1   O  0  1  N  N  N  30.739   -9.166  20.185  -1.026  -4.338   0.009  OAM  9PX  24  
9PX  OAP  O2   O  0  1  N  N  N  32.682   -8.706  24.263  -4.391  -2.266  -1.959  OAP  9PX  25  
9PX  OAX  O3   O  0  1  N  N  N  21.799  -10.719  23.263   6.338  -0.112  -0.315  OAX  9PX  26  
9PX  OAZ  O4   O  0  1  N  N  N  19.886  -10.921  24.806   8.208   1.209   0.978  OAZ  9PX  27  
9PX  OBA  O5   O  0  1  N  N  N  21.135  -13.042  24.287   8.104  -1.312   1.029  OBA  9PX  28  
9PX  OBB  O6   O  0  1  N  N  N  22.285  -11.319  25.766   8.834  -0.231  -1.131  OBB  9PX  29  
9PX  OBC  O7   O  0  1  N  N  N  24.375  -10.428  24.458   3.799  -1.296  -0.955  OBC  9PX  30  
9PX  OBD  O8   O  0  1  N  N  N  25.165   -9.801  21.029   2.880   1.192   1.573  OBD  9PX  31  
9PX  OBE  O9   O  0  1  N  N  N  27.598  -11.107  22.063   1.312  -1.162  -0.756  OBE  9PX  32  
9PX  OBG  O10  O  0  1  N  N  N  30.646   -5.747  26.225  -7.363  -0.526   0.889  OBG  9PX  33  
9PX  OBH  O11  O  0  1  N  N  N  32.907   -5.639  26.000  -5.666  -0.295   2.299  OBH  9PX  34  
9PX  OBI  O12  O  0  1  N  N  N  31.641   -6.315  24.224  -5.150  -0.723   0.185  OBI  9PX  35  
9PX  OBJ  O13  O  0  1  N  N  N  30.451   -7.194  24.019  -3.932  -0.693   0.506  OBJ  9PX  36  
9PX  PAY  P1   P  0  1  N  N  N  21.228  -11.473  24.550   7.876  -0.137   0.159  PAY  9PX  37  
9PX  H1   H1   H  0  1  N  N  N  28.073   -9.891  29.948  -3.939   5.444  -0.822  H1   9PX  38  
9PX  H2   H2   H  0  1  N  N  N  28.931   -8.312  29.940  -2.341   5.887  -1.469  H2   9PX  39  
9PX  H3   H3   H  0  1  N  N  N  27.136   -8.359  29.895  -3.512   5.029  -2.499  H3   9PX  40  
9PX  H4   H4   H  0  1  N  N  N  30.235   -8.833  28.076  -3.924   2.652  -2.204  H4   9PX  41  
9PX  H5   H5   H  0  1  N  N  N  26.050   -9.014  25.460  -0.196   2.568   1.033  H5   9PX  42  
9PX  H6   H6   H  0  1  N  N  N  25.367   -9.979  28.230  -0.142   5.405  -0.234  H6   9PX  43  
9PX  H7   H7   H  0  1  N  N  N  25.745   -8.399  28.997  -1.737   5.843   0.424  H7   9PX  44  
9PX  H8   H8   H  0  1  N  N  N  24.936   -8.448  27.394  -0.582   4.929   1.423  H8   9PX  45  
9PX  H9   H9   H  0  1  N  N  N  27.107   -8.565  22.237   0.273  -0.734   1.660  H9   9PX  46  
9PX  H10  H10  H  0  1  N  N  N  26.143   -8.617  23.752   0.363   1.042   1.588  H10  9PX  47  
9PX  H11  H11  H  0  1  N  N  N  26.544  -11.091  23.863   1.431   0.898  -0.645  H11  9PX  48  
9PX  H12  H12  H  0  1  N  N  N  25.095  -11.686  21.893   2.760  -0.868   1.461  H12  9PX  49  
9PX  H13  H13  H  0  1  N  N  N  23.815   -9.183  22.867   3.918   0.764  -0.844  H13  9PX  50  
9PX  H14  H14  H  0  1  N  N  N  22.834  -11.099  21.534   5.296   0.731   1.257  H14  9PX  51  
9PX  H15  H15  H  0  1  N  N  N  23.185  -12.191  22.916   5.285  -1.048   1.196  H15  9PX  52  
9PX  H16  H16  H  0  1  N  N  N  30.066   -5.162  28.131  -8.075   0.700   2.419  H16  9PX  53  
9PX  H17  H17  H  0  1  N  N  N  31.639   -6.023  28.027  -9.300  -0.327   1.637  H17  9PX  54  
9PX  H18  H18  H  0  1  N  N  N  31.508   -4.322  27.465  -8.122  -1.046   2.761  H18  9PX  55  
9PX  H19  H19  H  0  1  N  N  N  32.715   -8.944  21.773  -2.966  -4.167  -1.440  H19  9PX  56  
9PX  H20  H20  H  0  1  N  N  N  30.956   -9.803  25.564  -3.572   0.123  -2.372  H20  9PX  57  
9PX  H21  H21  H  0  1  N  N  N  19.242  -11.618  24.761   8.080   2.021   0.468  H21  9PX  58  
9PX  H22  H22  H  0  1  N  N  N  22.593  -12.178  26.029   9.778  -0.250  -0.920  H22  9PX  59  
9PX  H23  H23  H  0  1  N  N  N  23.626  -10.159  24.977   3.797  -2.107  -0.430  H23  9PX  60  
9PX  H24  H24  H  0  1  N  N  N  24.311   -9.899  20.624   2.882   2.003   1.047  H24  9PX  61  
9PX  H25  H25  H  0  1  N  N  N  28.445  -11.057  22.490   1.310  -1.973  -0.230  H25  9PX  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9PX  OAM  CAL  DOUB  N  N   1  
9PX  OBD  CAU  SING  N  N   2  
9PX  CAL  NAK  SING  N  N   3  
9PX  CAL  NAN  SING  N  N   4  
9PX  NAK  CAJ  DOUB  N  N   5  
9PX  OBE  CAT  SING  N  N   6  
9PX  CAU  CAT  SING  N  N   7  
9PX  CAU  CAV  SING  N  N   8  
9PX  NAN  CAO  SING  N  N   9  
9PX  CAW  CAV  SING  N  N  10  
9PX  CAW  OAX  SING  N  N  11  
9PX  CAT  CAS  SING  N  N  12  
9PX  CAV  OBC  SING  N  N  13  
9PX  CAS  NAI  SING  N  N  14  
9PX  OAX  PAY  SING  N  N  15  
9PX  CAJ  NAI  SING  N  N  16  
9PX  CAJ  CAQ  SING  N  N  17  
9PX  CAO  CAQ  SING  N  N  18  
9PX  CAO  OAP  DOUB  N  N  19  
9PX  NAI  CAE  SING  N  N  20  
9PX  OBJ  CAQ  SING  N  N  21  
9PX  OBJ  OBI  SING  N  N  22  
9PX  CAQ  NAR  SING  N  N  23  
9PX  OBI  CBF  SING  N  N  24  
9PX  OBA  PAY  DOUB  N  N  25  
9PX  PAY  OAZ  SING  N  N  26  
9PX  PAY  OBB  SING  N  N  27  
9PX  CAE  CAF  DOUB  Y  N  28  
9PX  CAE  CAD  SING  Y  N  29  
9PX  NAR  CAD  SING  N  N  30  
9PX  CBF  OBH  DOUB  N  N  31  
9PX  CBF  OBG  SING  N  N  32  
9PX  CAF  CAG  SING  Y  N  33  
9PX  CAD  CAC  DOUB  Y  N  34  
9PX  OBG  CBK  SING  N  N  35  
9PX  CAG  CAH  SING  N  N  36  
9PX  CAG  CAB  DOUB  Y  N  37  
9PX  CAC  CAB  SING  Y  N  38  
9PX  CAB  CAA  SING  N  N  39  
9PX  CAA  H1   SING  N  N  40  
9PX  CAA  H2   SING  N  N  41  
9PX  CAA  H3   SING  N  N  42  
9PX  CAC  H4   SING  N  N  43  
9PX  CAF  H5   SING  N  N  44  
9PX  CAH  H6   SING  N  N  45  
9PX  CAH  H7   SING  N  N  46  
9PX  CAH  H8   SING  N  N  47  
9PX  CAS  H9   SING  N  N  48  
9PX  CAS  H10  SING  N  N  49  
9PX  CAT  H11  SING  N  N  50  
9PX  CAU  H12  SING  N  N  51  
9PX  CAV  H13  SING  N  N  52  
9PX  CAW  H14  SING  N  N  53  
9PX  CAW  H15  SING  N  N  54  
9PX  CBK  H16  SING  N  N  55  
9PX  CBK  H17  SING  N  N  56  
9PX  CBK  H18  SING  N  N  57  
9PX  NAN  H19  SING  N  N  58  
9PX  NAR  H20  SING  N  N  59  
9PX  OAZ  H21  SING  N  N  60  
9PX  OBB  H22  SING  N  N  61  
9PX  OBC  H23  SING  N  N  62  
9PX  OBD  H24  SING  N  N  63  
9PX  OBE  H25  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9PX  SMILES            ACDLabs               12.01  "Cc1cc3c(cc1C)N(C=2C(C(=O)NC(N=2)=O)(N3)OOC(=O)OC)CC(C(C(O)COP(O)(=O)O)O)O"  
9PX  InChI             InChI                 1.03   "InChI=1S/C19H25N4O13P/c1-8-4-10-11(5-9(8)2)23(6-12(24)14(26)13(25)7-34-37(30,31)32)15-19(22-10,36-35-18(29)33-3)16(27)21-17(28)20-15/h4-5,12-14,22,24-26H,6-7H2,1-3H3,(H,21,27,28)(H2,30,31,32)/t12-,13+,14-,19-/m0/s1"  
9PX  InChIKey          InChI                 1.03   BKTAMFVARSDVLC-LJPSSGMGSA-N  
9PX  SMILES_CANONICAL  CACTVS                3.385  "COC(=O)OO[C@@]12Nc3cc(C)c(C)cc3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)C1=NC(=O)NC2=O"  
9PX  SMILES            CACTVS                3.385  "COC(=O)OO[C]12Nc3cc(C)c(C)cc3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)C1=NC(=O)NC2=O"  
9PX  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)[C@@]3(N2)OOC(=O)OC)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O"  
9PX  SMILES            "OpenEye OEToolkits"  2.0.6  "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3(N2)OOC(=O)OC)CC(C(C(COP(=O)(O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9PX  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-deoxy-1-[(4aS)-4a-[(methoxycarbonyl)peroxy]-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol"  
9PX  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(4~{a}~{S})-7,8-dimethyl-2,4-bis(oxidanylidene)-10-[(2~{S},3~{S},4~{R})-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl]-5~{H}-benzo[g]pteridin-4~{a}-yl]oxy methyl carbonate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9PX  "Create component"  2018-06-20  PDBJ  
9PX  "Initial release"   2019-06-19  RCSB  
##
