data_C3X
#

_chem_comp.id                                   C3X
_chem_comp.name                                 "(2R)-oxiran-2-ylmethyl beta-D-xylopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H14 O6"
_chem_comp.mon_nstd_parent_comp_id              XYP
_chem_comp.pdbx_synonyms                        
;2,3-EPOXYPROPYL-BETA-D-XYLOSIDE; (2R)-oxiran-2-ylmethyl beta-D-xyloside; (2R)-oxiran-2-ylmethyl D-xyloside;
(2R)-oxiran-2-ylmethyl xyloside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       206.193
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    C3X
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1REF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  C3X  "2,3-EPOXYPROPYL-BETA-D-XYLOSIDE"         PDB  ?  
2  C3X  "(2R)-oxiran-2-ylmethyl beta-D-xyloside"  PDB  ?  
3  C3X  "(2R)-oxiran-2-ylmethyl D-xyloside"       PDB  ?  
4  C3X  "(2R)-oxiran-2-ylmethyl xyloside"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C3X  C1      C1      C  0  1  N  N  S  81.889  22.645  10.748  -0.154   0.275  -0.005  C1      C3X   1  
C3X  C2      C2      C  0  1  N  N  R  81.816  23.942  11.585  -1.064  -0.232   1.115  C2      C3X   2  
C3X  C3      C3      C  0  1  N  N  S  83.180  24.244  12.220  -0.477   0.188   2.467  C3      C3X   3  
C3X  C4      C4      C  0  1  N  N  R  83.732  23.020  12.965   0.977  -0.288   2.539  C4      C3X   4  
C3X  C5      C5      C  0  1  N  N  N  83.748  21.791  12.043   1.733   0.224   1.311  C5      C3X   5  
C3X  O1      O1      O  0  1  N  N  N  80.575  22.226  10.341  -0.711  -0.087  -1.270  O1      C3X   6  
C3X  O2      O2      O  0  1  N  N  N  81.467  25.041  10.759  -2.369   0.329   0.962  O2      C3X   7  
C3X  O3      O3      O  0  1  N  N  N  83.061  25.309  13.131  -1.235  -0.404   3.524  O3      C3X   8  
C3X  O4      O4      O  0  1  N  N  N  85.042  23.293  13.400   1.589   0.222   3.725  O4      C3X   9  
C3X  O5      O5      O  0  1  N  N  N  82.439  21.581  11.509   1.142  -0.303   0.125  O5      C3X  10  
C3X  "C1'"   "C1'"   C  0  1  N  N  N  80.448  21.905   8.943   0.174   0.417  -2.271  "C1'"   C3X  11  
C3X  "C2'"   "C2'"   C  0  1  N  N  R  79.146  21.178   8.578  -0.367   0.060  -3.657  "C2'"   C3X  12  
C3X  "C3'"   "C3'"   C  0  1  N  N  N  77.840  21.773   9.179   0.455   0.485  -4.875  "C3'"   C3X  13  
C3X  "O'"    "O'"    O  0  1  N  N  N  79.006  21.278   7.152   0.375  -0.875  -4.441  "O'"    C3X  14  
C3X  H1      H1      H  0  1  N  N  N  82.527  22.869   9.862  -0.074   1.360   0.057  H1      C3X  15  
C3X  H2      H2      H  0  1  N  N  N  81.045  23.794  12.377  -1.127  -1.319   1.068  H2      C3X  16  
C3X  H3      H3      H  0  1  N  N  N  83.882  24.514  11.397  -0.510   1.273   2.558  H3      C3X  17  
C3X  H4      H4      H  0  1  N  N  N  83.075  22.804  13.840   1.004  -1.377   2.556  H4      C3X  18  
C3X  H51     H51     H  0  1  N  N  N  84.521  21.873  11.244   1.687   1.312   1.286  H51     C3X  19  
C3X  H52     H52     H  0  1  N  N  N  84.145  20.884  12.555   2.774  -0.092   1.369  H52     C3X  20  
C3X  HO2     HO2     H  0  1  N  Y  N  81.422  25.838  11.273  -2.697   0.044   0.098  HO2     C3X  21  
C3X  HO3     HO3     H  0  1  N  Y  N  83.905  25.496  13.524  -0.833  -0.114   4.354  HO3     C3X  22  
C3X  HO4     HO4     H  0  1  N  Y  N  85.383  22.535  13.860   2.501  -0.097   3.729  HO4     C3X  23  
C3X  "H1'1"  "H1'1"  H  0  0  N  N  N  80.570  22.821   8.320   0.248   1.500  -2.178  "H1'1"  C3X  24  
C3X  "H1'2"  "H1'2"  H  0  0  N  N  N  81.331  21.320   8.595   1.161  -0.026  -2.141  "H1'2"  C3X  25  
C3X  "H2'"   "H2'"   H  0  1  N  N  N  79.245  20.146   8.989  -1.452   0.056  -3.754  "H2'"   C3X  26  
C3X  "H3'1"  "H3'1"  H  0  0  N  N  N  76.940  21.692   9.833  -0.083   0.762  -5.781  "H3'1"  C3X  27  
C3X  "H3'2"  "H3'2"  H  0  0  N  N  N  77.312  22.488   9.852   1.387   1.021  -4.696  "H3'2"  C3X  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C3X  C1     C2      SING  N  N   1  
C3X  C1     O1      SING  N  N   2  
C3X  C1     O5      SING  N  N   3  
C3X  C1     H1      SING  N  N   4  
C3X  C2     C3      SING  N  N   5  
C3X  C2     O2      SING  N  N   6  
C3X  C2     H2      SING  N  N   7  
C3X  C3     C4      SING  N  N   8  
C3X  C3     O3      SING  N  N   9  
C3X  C3     H3      SING  N  N  10  
C3X  C4     C5      SING  N  N  11  
C3X  C4     O4      SING  N  N  12  
C3X  C4     H4      SING  N  N  13  
C3X  C5     O5      SING  N  N  14  
C3X  C5     H51     SING  N  N  15  
C3X  C5     H52     SING  N  N  16  
C3X  O1     "C1'"   SING  N  N  17  
C3X  O2     HO2     SING  N  N  18  
C3X  O3     HO3     SING  N  N  19  
C3X  O4     HO4     SING  N  N  20  
C3X  "C1'"  "C2'"   SING  N  N  21  
C3X  "C1'"  "H1'1"  SING  N  N  22  
C3X  "C1'"  "H1'2"  SING  N  N  23  
C3X  "C2'"  "C3'"   SING  N  N  24  
C3X  "C2'"  "O'"    SING  N  N  25  
C3X  "C2'"  "H2'"   SING  N  N  26  
C3X  "C3'"  "O'"    SING  N  N  27  
C3X  "C3'"  "H3'1"  SING  N  N  28  
C3X  "C3'"  "H3'2"  SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C3X  SMILES            ACDLabs               10.04  "O(CC1OC1)C2OCC(O)C(O)C2O"  
C3X  SMILES_CANONICAL  CACTVS                3.341  "O[C@@H]1CO[C@@H](OC[C@H]2CO2)[C@H](O)[C@H]1O"  
C3X  SMILES            CACTVS                3.341  "O[CH]1CO[CH](OC[CH]2CO2)[CH](O)[CH]1O"  
C3X  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@@H](O1)CO[C@H]2[C@@H]([C@H]([C@@H](CO2)O)O)O"  
C3X  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C(O1)COC2C(C(C(CO2)O)O)O"  
C3X  InChI             InChI                 1.03   "InChI=1S/C8H14O6/c9-5-3-14-8(7(11)6(5)10)13-2-4-1-12-4/h4-11H,1-3H2/t4-,5-,6+,7-,8-/m1/s1"  
C3X  InChIKey          InChI                 1.03   JKWGJZWJCPSTJC-JAJWTYFOSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
C3X  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2R)-oxiran-2-ylmethyl beta-D-xylopyranoside"  
C3X  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3R,4S,5R)-2-[[(2R)-oxiran-2-yl]methoxy]oxane-3,4,5-triol"  
#
_pdbx_chem_comp_related.comp_id            C3X
_pdbx_chem_comp_related.related_comp_id    XYP
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  C3X  C1   XYP  C1   "Carbohydrate core"  
 2  C3X  C2   XYP  C2   "Carbohydrate core"  
 3  C3X  C3   XYP  C3   "Carbohydrate core"  
 4  C3X  C4   XYP  C4   "Carbohydrate core"  
 5  C3X  C5   XYP  C5   "Carbohydrate core"  
 6  C3X  O1   XYP  O1   "Carbohydrate core"  
 7  C3X  O2   XYP  O2   "Carbohydrate core"  
 8  C3X  O3   XYP  O3   "Carbohydrate core"  
 9  C3X  O4   XYP  O4   "Carbohydrate core"  
10  C3X  O5   XYP  O5   "Carbohydrate core"  
11  C3X  H1   XYP  H1   "Carbohydrate core"  
12  C3X  H2   XYP  H2   "Carbohydrate core"  
13  C3X  H3   XYP  H3   "Carbohydrate core"  
14  C3X  H4   XYP  H4   "Carbohydrate core"  
15  C3X  H51  XYP  H51  "Carbohydrate core"  
16  C3X  H52  XYP  H52  "Carbohydrate core"  
17  C3X  HO2  XYP  HO2  "Carbohydrate core"  
18  C3X  HO3  XYP  HO3  "Carbohydrate core"  
19  C3X  HO4  XYP  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
C3X  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
C3X  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
C3X  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
C3X  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C3X  "Create component"          1999-07-08  RCSB  
C3X  "Modify descriptor"         2011-06-04  RCSB  
C3X  "Other modification"        2020-07-03  RCSB  
C3X  "Modify parent residue"     2020-07-17  RCSB  
C3X  "Modify name"               2020-07-17  RCSB  
C3X  "Modify synonyms"           2020-07-17  RCSB  
C3X  "Modify internal type"      2020-07-17  RCSB  
C3X  "Modify linking type"       2020-07-17  RCSB  
C3X  "Modify leaving atom flag"  2020-07-17  RCSB  
##
