data_N2X
# 
_chem_comp.id                                    N2X 
_chem_comp.name                                  "(3S)-5-bromo-1-[(2-ethoxyphenyl)methyl]-3-hydroxy-1,3-dihydro-2H-indol-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H16 Br N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        362.218 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N2X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GDY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N2X C4  C1  C  0 1 N N N N N N 8.413  -2.485 23.172 2.420  -0.720 1.369  C4  N2X 1  
N2X C5  C2  C  0 1 N N N N N N 7.940  -3.875 21.149 1.336  -2.546 0.090  C5  N2X 2  
N2X C6  C3  C  0 1 N N S N N N 7.323  -3.657 19.776 -0.027 -2.803 -0.518 C6  N2X 3  
N2X C7  C4  C  0 1 Y N N N N N 6.931  -2.209 19.802 -0.820 -1.562 -0.177 C7  N2X 4  
N2X C8  C5  C  0 1 Y N N N N N 7.335  -1.670 21.016 0.036  -0.735 0.538  C8  N2X 5  
N2X C10 C6  C  0 1 Y N N N N N 6.639  0.507  20.310 -1.734 0.880  0.724  C10 N2X 6  
N2X C13 C7  C  0 1 Y N N N N N 10.469 -1.450 22.123 4.394  -0.428 -0.142 C13 N2X 7  
N2X C15 C8  C  0 1 Y N N N N N 11.749 0.229  23.246 4.720  1.584  -1.403 C15 N2X 8  
N2X BR  BR1 BR 0 0 N N N N N N 5.536  1.093  17.758 -4.356 0.581  -0.348 BR  N2X 9  
N2X C11 C9  C  0 1 Y N N N N N 6.235  -0.044 19.105 -2.578 0.047  0.010  C11 N2X 10 
N2X C12 C10 C  0 1 Y N N N N N 6.358  -1.393 18.838 -2.116 -1.178 -0.440 C12 N2X 11 
N2X O2  O1  O  0 1 N N N N N N 6.213  -4.524 19.661 -0.628 -3.958 0.069  O2  N2X 12 
N2X O1  O2  O  0 1 N N N N N N 8.413  -4.911 21.576 2.292  -3.292 0.054  O1  N2X 13 
N2X C9  C11 C  0 1 Y N N N N N 7.193  -0.311 21.280 -0.436 0.497  0.988  C9  N2X 14 
N2X N   N1  N  0 1 N N N N N N 7.889  -2.679 21.819 1.288  -1.336 0.671  N   N2X 15 
N2X C3  C12 C  0 1 Y N N N N N 9.617  -1.574 23.220 3.230  0.092  0.392  C3  N2X 16 
N2X C14 C13 C  0 1 Y N N N N N 11.519 -0.547 22.135 5.138  0.317  -1.038 C14 N2X 17 
N2X C16 C14 C  0 1 Y N N N N N 10.938 0.109  24.364 3.557  2.108  -0.873 C16 N2X 18 
N2X C2  C15 C  0 1 Y N N N N N 9.872  -0.782 24.344 2.809  1.362  0.027  C2  N2X 19 
N2X O   O3  O  0 1 N N N N N N 9.007  -0.959 25.401 1.664  1.876  0.550  O   N2X 20 
N2X C1  C16 C  0 1 N N N N N N 8.823  0.120  26.336 1.291  3.189  0.130  C1  N2X 21 
N2X C   C17 C  0 1 N N N N N N 8.077  -0.403 27.503 -0.014 3.594  0.819  C   N2X 22 
N2X H1  H1  H  0 1 N N N N N N 7.619  -2.048 23.795 2.048  -0.071 2.161  H1  N2X 23 
N2X H2  H2  H  0 1 N N N N N N 8.700  -3.466 23.579 3.047  -1.499 1.802  H2  N2X 24 
N2X H3  H3  H  0 1 N N N N N N 8.070  -3.841 18.989 0.053  -2.920 -1.599 H3  N2X 25 
N2X H4  H4  H  0 1 N N N N N N 6.523  1.565  20.491 -2.094 1.836  1.076  H4  N2X 26 
N2X H5  H5  H  0 1 N N N N N N 10.308 -2.067 21.251 4.725  -1.415 0.145  H5  N2X 27 
N2X H6  H6  H  0 1 N N N N N N 12.566 0.936  23.248 5.303  2.164  -2.103 H6  N2X 28 
N2X H7  H7  H  0 1 N N N N N N 6.016  -1.804 17.900 -2.771 -1.831 -0.998 H7  N2X 29 
N2X H8  H8  H  0 1 N N N N N N 6.297  -5.232 20.289 -0.159 -4.783 -0.117 H8  N2X 30 
N2X H9  H9  H  0 1 N N N N N N 7.510  0.099  22.227 0.217  1.153  1.546  H9  N2X 31 
N2X H10 H10 H  0 1 N N N N N N 12.158 -0.452 21.270 6.047  -0.091 -1.454 H10 N2X 32 
N2X H11 H11 H  0 1 N N N N N N 11.133 0.704  25.244 3.230  3.097  -1.158 H11 N2X 33 
N2X H12 H12 H  0 1 N N N N N N 9.802  0.503  26.661 2.078  3.894  0.398  H12 N2X 34 
N2X H13 H13 H  0 1 N N N N N N 8.251  0.931  25.861 1.149  3.198  -0.951 H13 N2X 35 
N2X H14 H14 H  0 1 N N N N N N 7.924  0.405  28.233 -0.801 2.889  0.550  H14 N2X 36 
N2X H15 H15 H  0 1 N N N N N N 7.101  -0.788 27.172 0.128  3.585  1.900  H15 N2X 37 
N2X H16 H16 H  0 1 N N N N N N 8.652  -1.216 27.971 -0.299 4.596  0.498  H16 N2X 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N2X BR  C11 SING N N 1  
N2X C12 C11 DOUB Y N 2  
N2X C12 C7  SING Y N 3  
N2X C11 C10 SING Y N 4  
N2X O2  C6  SING N N 5  
N2X C6  C7  SING N N 6  
N2X C6  C5  SING N N 7  
N2X C7  C8  DOUB Y N 8  
N2X C10 C9  DOUB Y N 9  
N2X C8  C9  SING Y N 10 
N2X C8  N   SING N N 11 
N2X C5  O1  DOUB N N 12 
N2X C5  N   SING N N 13 
N2X N   C4  SING N N 14 
N2X C13 C14 DOUB Y N 15 
N2X C13 C3  SING Y N 16 
N2X C14 C15 SING Y N 17 
N2X C4  C3  SING N N 18 
N2X C3  C2  DOUB Y N 19 
N2X C15 C16 DOUB Y N 20 
N2X C2  C16 SING Y N 21 
N2X C2  O   SING N N 22 
N2X O   C1  SING N N 23 
N2X C1  C   SING N N 24 
N2X C4  H1  SING N N 25 
N2X C4  H2  SING N N 26 
N2X C6  H3  SING N N 27 
N2X C10 H4  SING N N 28 
N2X C13 H5  SING N N 29 
N2X C15 H6  SING N N 30 
N2X C12 H7  SING N N 31 
N2X O2  H8  SING N N 32 
N2X C9  H9  SING N N 33 
N2X C14 H10 SING N N 34 
N2X C16 H11 SING N N 35 
N2X C1  H12 SING N N 36 
N2X C1  H13 SING N N 37 
N2X C   H14 SING N N 38 
N2X C   H15 SING N N 39 
N2X C   H16 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N2X SMILES           ACDLabs              12.01 "CCOc1ccccc1CN1c2ccc(Br)cc2C(O)C1=O"                                                                                        
N2X InChI            InChI                1.06  "InChI=1S/C17H16BrNO3/c1-2-22-15-6-4-3-5-11(15)10-19-14-8-7-12(18)9-13(14)16(20)17(19)21/h3-9,16,20H,2,10H2,1H3/t16-/m0/s1" 
N2X InChIKey         InChI                1.06  DDTMARFKTVIEHP-INIZCTEOSA-N                                                                                                 
N2X SMILES_CANONICAL CACTVS               3.385 "CCOc1ccccc1CN2C(=O)[C@@H](O)c3cc(Br)ccc23"                                                                                 
N2X SMILES           CACTVS               3.385 "CCOc1ccccc1CN2C(=O)[CH](O)c3cc(Br)ccc23"                                                                                   
N2X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOc1ccccc1CN2c3ccc(cc3[C@@H](C2=O)O)Br"                                                                                   
N2X SMILES           "OpenEye OEToolkits" 2.0.7 "CCOc1ccccc1CN2c3ccc(cc3C(C2=O)O)Br"                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
N2X "SYSTEMATIC NAME" ACDLabs              12.01 "(3S)-5-bromo-1-[(2-ethoxyphenyl)methyl]-3-hydroxy-1,3-dihydro-2H-indol-2-one" 
N2X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-5-bromanyl-1-[(2-ethoxyphenyl)methyl]-3-oxidanyl-3~{H}-indol-2-one"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N2X "Create component" 2023-08-16 RCSB 
N2X "Initial release"  2023-11-08 RCSB 
N2X "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            N2X 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C6 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
