data_PVX
# 
_chem_comp.id                                    PVX 
_chem_comp.name                                  
"N-(2-amino-5-{formyl[(6aS,8R,9R,9aR)-9-hydroxy-4-methoxy-1,11-dioxo-1,6a,8,9,9a,11-hexahydrocyclopenta[c]furo[3',2':4,5]furo[2,3-h]chromen-8-yl]amino}-6-oxo-1,6-dihydropyrimidin-4-yl)-2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosylamine" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C27 H26 N5 O15 P" 
_chem_comp.mon_nstd_parent_comp_id               DC 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-01-18 
_chem_comp.pdbx_modified_date                    2011-08-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        691.494 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PVX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PVX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PVX O      O      O 0 1 N N N 124.937 87.725 38.838 -4.766 0.171  -2.917 O      PVX 1  
PVX P      P      P 0 1 N N N 130.603 90.865 45.326 5.678  -3.791 -0.798 P      PVX 2  
PVX C1     C1     C 0 1 N N N 125.234 83.920 35.346 -7.718 -1.977 0.361  C1     PVX 3  
PVX N1     N1     N 0 1 N N N 126.035 85.176 42.856 2.093  2.767  -1.579 N1     PVX 4  
PVX O1     O1     O 0 1 N N N 125.269 83.025 34.500 -8.470 -2.501 1.157  O1     PVX 5  
PVX C2     C2     C 0 1 N N N 125.277 84.773 41.823 1.164  3.166  -2.420 C2     PVX 6  
PVX N2     N2     N 0 1 N N N 123.925 85.264 41.742 1.500  3.397  -3.729 N2     PVX 7  
PVX C3     C3     C 0 1 N N N 124.349 85.781 36.668 -6.966 -0.976 -1.561 C3     PVX 8  
PVX N3     N3     N 0 1 N N N 125.815 83.851 40.802 -0.123 3.355  -2.020 N3     PVX 9  
PVX C4     C4     C 0 1 N N N 127.100 83.399 40.898 -0.474 3.132  -0.736 C4     PVX 10 
PVX O4     O4     O 0 1 N N N 127.493 82.641 40.023 -1.627 3.299  -0.369 O4     PVX 11 
PVX C5     C5     C 0 1 N N N 127.943 83.825 42.008 0.509  2.707  0.169  C5     PVX 12 
PVX C6     C6     C 0 1 N N N 127.336 84.708 42.933 1.809  2.530  -0.293 C6     PVX 13 
PVX N6     N6     N 0 1 N N N 128.127 85.167 44.053 2.803  2.110  0.573  N6     PVX 14 
PVX N7     N7     N 0 1 N N N 129.376 83.341 42.124 0.186  2.463  1.519  N7     PVX 15 
PVX O7     O7     O 0 1 N N N 130.617 85.420 41.759 1.012  0.273  1.155  O7     PVX 16 
PVX C8     C8     C 0 1 N N N 129.568 82.268 42.914 -0.212 3.479  2.310  C8     PVX 17 
PVX O8     O8     O 0 1 N N N 130.674 81.759 43.105 -0.403 3.288  3.493  O8     PVX 18 
PVX C9     C9     C 0 1 N N R 130.323 83.970 39.889 -1.124 0.510  2.227  C9     PVX 19 
PVX O9     O9     O 0 1 N N N 131.387 83.311 39.252 -1.342 0.120  3.585  O9     PVX 20 
PVX CM     CM     C 0 1 N N N 124.637 88.822 39.747 -4.174 0.804  -4.053 CM     PVX 21 
PVX O10    O10    O 0 1 N N N 128.448 84.291 37.363 -4.100 -1.535 1.518  O10    PVX 22 
PVX C11    C11    C 0 1 N N N 127.540 83.743 36.377 -5.390 -1.906 1.619  C11    PVX 23 
PVX O11    O11    O 0 1 N N N 127.988 82.809 35.712 -5.786 -2.435 2.643  O11    PVX 24 
PVX C1D    C1D    C 0 1 N N R 127.562 86.182 44.919 4.143  1.816  0.061  C1D    PVX 25 
PVX O1P    O1P    O 0 1 N N N 129.256 90.856 45.970 4.469  -4.408 0.067  O1P    PVX 26 
PVX C2A    C2A    C 0 1 N N N 123.993 84.790 35.531 -8.063 -1.493 -1.003 C2A    PVX 27 
PVX C2D    C2D    C 0 1 N N N 128.140 85.994 46.313 5.203  2.223  1.103  C2D    PVX 28 
PVX O3P    O3P    O 0 1 N N N 131.750 91.510 46.003 6.970  -4.242 -0.233 O3P    PVX 29 
PVX "C3'"  "C3'"  C 0 1 N N S 128.275 87.438 46.759 5.972  0.912  1.394  "C3'"  PVX 30 
PVX "O3'"  "O3'"  O 0 1 N N N 126.961 87.954 47.195 7.376  1.157  1.502  "O3'"  PVX 31 
PVX C3A    C3A    C 0 1 N N N 125.794 85.385 37.042 -5.829 -1.078 -0.623 C3A    PVX 32 
PVX O2P    O2P    O 0 1 N Y N 130.434 91.565 43.891 5.556  -4.291 -2.324 O2P    PVX 33 
PVX C4A    C4A    C 0 1 Y N N 126.648 85.971 38.042 -4.474 -0.697 -0.699 C4A    PVX 34 
PVX C4B    C4B    C 0 1 Y N N 126.258 87.094 38.927 -3.957 -0.074 -1.857 C4B    PVX 35 
PVX C4D    C4D    C 0 1 N N R 128.791 88.143 45.508 5.654  0.063  0.137  C4D    PVX 36 
PVX O4D    O4D    O 0 1 N N N 127.991 87.510 44.485 4.283  0.403  -0.161 O4D    PVX 37 
PVX C5B    C5B    C 0 1 Y N N 127.242 87.563 39.909 -2.629 0.285  -1.906 C5B    PVX 38 
PVX C5D    C5D    C 0 1 N N N 130.270 87.863 45.231 5.788  -1.429 0.447  C5D    PVX 39 
PVX O5D    O5D    O 0 1 N N N 131.032 89.168 44.979 5.604  -2.183 -0.753 O5D    PVX 40 
PVX C5M    C5M    C 0 1 Y N N 128.512 86.933 39.993 -1.782 0.035  -0.819 C5M    PVX 41 
PVX C6A    C6A    C 0 1 N N S 130.575 86.290 40.663 0.087  -0.495 0.377  C6A    PVX 42 
PVX O6A    O6A    O 0 1 N N N 129.557 87.262 40.885 -0.460 0.316  -0.674 O6A    PVX 43 
PVX C8A    C8A    C 0 1 N N R 130.510 84.021 41.397 0.284  1.106  2.062  C8A    PVX 44 
PVX C9A    C9A    C 0 1 N N R 130.255 85.415 39.429 -1.143 -0.725 1.303  C9A    PVX 45 
PVX C9B    C9B    C 0 1 Y N N 128.848 85.905 39.155 -2.291 -0.581 0.321  C9B    PVX 46 
PVX CA1    CA1    C 0 1 Y N N 127.957 85.395 38.178 -3.619 -0.945 0.402  CA1    PVX 47 
PVX CB1    CB1    C 0 1 N N N 126.231 84.335 36.252 -6.284 -1.691 0.558  CB1    PVX 48 
PVX HN2    HN2    H 0 1 N N N 123.576 85.886 42.443 2.414  3.266  -4.026 HN2    PVX 49 
PVX HN2A   HN2A   H 0 0 N N N 123.335 84.982 40.985 0.823  3.692  -4.359 HN2A   PVX 50 
PVX H3     H3     H 0 1 N N N 123.735 86.560 37.095 -6.917 -0.547 -2.552 H3     PVX 51 
PVX HN3    HN3    H 0 1 N N N 125.238 83.558 40.040 -0.790 3.650  -2.660 HN3    PVX 52 
PVX H8     H8     H 0 1 N N N 128.710 81.832 43.405 -0.361 4.463  1.891  H8     PVX 53 
PVX H9     H9     H 0 1 N N N 129.413 83.408 39.633 -1.880 1.230  1.914  H9     PVX 54 
PVX HO9    HO9    H 0 1 N N N 131.236 83.298 38.314 -1.295 0.851  4.216  HO9    PVX 55 
PVX HM     HM     H 0 1 N N N 123.616 89.187 39.558 -3.368 0.180  -4.438 HM     PVX 56 
PVX HMA    HMA    H 0 1 N N N 124.714 88.469 40.786 -4.929 0.941  -4.827 HMA    PVX 57 
PVX HMB    HMB    H 0 1 N N N 125.354 89.640 39.584 -3.774 1.775  -3.760 HMB    PVX 58 
PVX H1D    H1D    H 0 1 N N N 126.466 86.095 44.896 4.312  2.358  -0.870 H1D    PVX 59 
PVX HO1P   HO1P   H 0 0 N N N 129.302 91.303 46.807 3.590  -4.154 -0.247 HO1P   PVX 60 
PVX H2A    H2A    H 0 1 N N N 123.063 84.728 34.985 -9.038 -1.552 -1.464 H2A    PVX 61 
PVX H2D    H2D    H 0 1 N N N 127.477 85.411 46.969 5.875  2.976  0.690  H2D    PVX 62 
PVX H2DA   H2DA   H 0 0 N N N 129.104 85.465 46.301 4.724  2.594  2.009  H2DA   PVX 63 
PVX "H3'"  "H3'"  H 0 1 N N N 128.946 87.585 47.618 5.593  0.430  2.296  "H3'"  PVX 64 
PVX "HO3'" "HO3'" H 0 0 N Y N 127.052 88.858 47.473 7.616  1.758  2.221  "HO3'" PVX 65 
PVX H4D    H4D    H 0 1 N N N 128.716 89.238 45.578 6.307  0.342  -0.690 H4D    PVX 66 
PVX H5B    H5B    H 0 1 N N N 127.001 88.385 40.566 -2.236 0.763  -2.791 H5B    PVX 67 
PVX H5D    H5D    H 0 1 N N N 130.708 87.354 46.102 6.780  -1.629 0.853  H5D    PVX 68 
PVX H5DA   H5DA   H 0 0 N N N 130.353 87.221 44.341 5.031  -1.718 1.177  H5DA   PVX 69 
PVX H6A    H6A    H 0 1 N N N 131.523 86.827 40.513 0.525  -1.421 0.005  H6A    PVX 70 
PVX H8A    H8A    H 0 1 N N N 131.418 83.475 41.692 0.789  1.131  3.027  H8A    PVX 71 
PVX H9A    H9A    H 0 1 N N N 130.906 85.475 38.544 -1.123 -1.674 1.839  H9A    PVX 72 
PVX H25    H25    H 0 1 N N N 128.304 84.367 44.626 2.612  2.010  1.518  H25    PVX 73 
PVX HO2P   HO2P   H 0 0 N Y N 131.099 92.235 43.785 5.593  -5.252 -2.427 HO2P   PVX 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PVX O     C4B    SING N N 1  
PVX O     CM     SING N N 2  
PVX P     O1P    SING N N 3  
PVX P     O3P    DOUB N N 4  
PVX C1    C2A    SING N N 5  
PVX C1    CB1    SING N N 6  
PVX N1    C6     SING N N 7  
PVX O1    C1     DOUB N N 8  
PVX C2    N1     DOUB N N 9  
PVX N2    C2     SING N N 10 
PVX N2    HN2    SING N N 11 
PVX N2    HN2A   SING N N 12 
PVX C3    C3A    SING N N 13 
PVX C3    H3     SING N N 14 
PVX N3    C2     SING N N 15 
PVX N3    C4     SING N N 16 
PVX N3    HN3    SING N N 17 
PVX C4    C5     SING N N 18 
PVX O4    C4     DOUB N N 19 
PVX C5    N7     SING N N 20 
PVX C5    C6     DOUB N N 21 
PVX C6    N6     SING N N 22 
PVX N6    C1D    SING N N 23 
PVX N7    C8     SING N N 24 
PVX C8    O8     DOUB N N 25 
PVX C8    H8     SING N N 26 
PVX C9    C8A    SING N N 27 
PVX C9    H9     SING N N 28 
PVX O9    C9     SING N N 29 
PVX O9    HO9    SING N N 30 
PVX CM    HM     SING N N 31 
PVX CM    HMA    SING N N 32 
PVX CM    HMB    SING N N 33 
PVX O10   CA1    SING N N 34 
PVX C11   O10    SING N N 35 
PVX O11   C11    DOUB N N 36 
PVX C1D   C2D    SING N N 37 
PVX C1D   H1D    SING N N 38 
PVX O1P   HO1P   SING N N 39 
PVX C2A   C3     DOUB N N 40 
PVX C2A   H2A    SING N N 41 
PVX C2D   "C3'"  SING N N 42 
PVX C2D   H2D    SING N N 43 
PVX C2D   H2DA   SING N N 44 
PVX "C3'" "O3'"  SING N N 45 
PVX "C3'" "H3'"  SING N N 46 
PVX "O3'" "HO3'" SING N N 47 
PVX C3A   C4A    SING N N 48 
PVX O2P   P      SING N N 49 
PVX C4A   CA1    DOUB Y N 50 
PVX C4A   C4B    SING Y N 51 
PVX C4B   C5B    DOUB Y N 52 
PVX C4D   "C3'"  SING N N 53 
PVX C4D   H4D    SING N N 54 
PVX O4D   C1D    SING N N 55 
PVX O4D   C4D    SING N N 56 
PVX C5B   C5M    SING Y N 57 
PVX C5B   H5B    SING N N 58 
PVX C5D   C4D    SING N N 59 
PVX C5D   H5D    SING N N 60 
PVX C5D   H5DA   SING N N 61 
PVX O5D   P      SING N N 62 
PVX O5D   C5D    SING N N 63 
PVX C5M   O6A    SING N N 64 
PVX C6A   O7     SING N N 65 
PVX C6A   O6A    SING N N 66 
PVX C6A   H6A    SING N N 67 
PVX C8A   N7     SING N N 68 
PVX C8A   O7     SING N N 69 
PVX C8A   H8A    SING N N 70 
PVX C9A   C9     SING N N 71 
PVX C9A   C6A    SING N N 72 
PVX C9A   H9A    SING N N 73 
PVX C9B   C5M    DOUB Y N 74 
PVX C9B   C9A    SING N N 75 
PVX CA1   C9B    SING Y N 76 
PVX CB1   C11    SING N N 77 
PVX CB1   C3A    DOUB N N 78 
PVX N6    H25    SING N N 79 
PVX O2P   HO2P   SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PVX SMILES           ACDLabs              12.01 "O=P(O)(O)OCC7OC(NC=1N=C(N)NC(=O)C=1N(C=O)C5OC6Oc4cc(OC)c3c(OC(=O)C=2C(=O)C=CC=23)c4C6C5O)CC7O" 
PVX SMILES_CANONICAL CACTVS               3.370 "COc1cc2O[C@H]3O[C@H]([C@H](O)[C@H]3c2c4OC(=O)C5=C(C=CC5=O)c14)N(C=O)C6=C(N[C@H]7C[C@H](O)[C@@H](CO[P](O)(O)=O)O7)N=C(N)NC6=O" 
PVX SMILES           CACTVS               3.370 "COc1cc2O[CH]3O[CH]([CH](O)[CH]3c2c4OC(=O)C5=C(C=CC5=O)c14)N(C=O)C6=C(N[CH]7C[CH](O)[CH](CO[P](O)(O)=O)O7)N=C(N)NC6=O" 
PVX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "COc1cc2c(c3c1C4=C(C(=O)C=C4)C(=O)O3)[C@@H]5[C@H]([C@@H](O[C@@H]5O2)N(C=O)C6=C(N=C(NC6=O)N)N[C@H]7C[C@@H]([C@H](O7)COP(=O)(O)O)O)O" 
PVX SMILES           "OpenEye OEToolkits" 1.7.0 "COc1cc2c(c3c1C4=C(C(=O)C=C4)C(=O)O3)C5C(C(OC5O2)N(C=O)C6=C(N=C(NC6=O)N)NC7CC(C(O7)COP(=O)(O)O)O)O" 
PVX InChI            InChI                1.03  
;InChI=1S/C27H26N5O15P/c1-42-11-5-12-17(21-16(11)8-2-3-9(34)15(8)25(38)46-21)18-20(36)24(47-26(18)45-12)32(7-33)19-22(30-27(28)31-23(19)37)29-14-4-10(35)13(44-14)6-43-48(39,40)41/h2-3,5,7,10,13-14,18,20,24,26,35-36H,4,6H2,1H3,(H2,39,40,41)(H4,28,29,30,31,37)/t10-,13+,14+,18+,20+,24+,26-/m0/s1
;
PVX InChIKey         InChI                1.03  OKIQEPDWYKTICF-MHRKVAGWSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PVX "SYSTEMATIC NAME" ACDLabs 12.01 
"N-(2-amino-5-{formyl[(6aS,8R,9R,9aR)-9-hydroxy-4-methoxy-1,11-dioxo-1,6a,8,9,9a,11-hexahydrocyclopenta[c]furo[3',2':4,5]furo[2,3-h]chromen-8-yl]amino}-6-oxo-1,6-dihydropyrimidin-4-yl)-2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosylamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PVX "Create component"     2011-01-18 RCSB 
PVX "Modify aromatic_flag" 2011-06-04 RCSB 
PVX "Modify descriptor"    2011-06-04 RCSB 
# 
