data_SYX
# 
_chem_comp.id                                    SYX 
_chem_comp.name                                  "(4-methylpiperazin-1-yl)[(2R)-oxolan-2-yl]methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H18 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-28 
_chem_comp.pdbx_modified_date                    2023-11-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        198.262 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SYX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GOW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SYX N1  N1  N 0 1 N N N N N N 14.556 -8.503  -27.621 0.560  0.348  0.337  N1  SYX 1  
SYX C4  C1  C 0 1 N N N N N N 15.961 -7.765  -29.487 2.192  -1.278 -0.458 C4  SYX 2  
SYX C5  C2  C 0 1 N N N N N N 14.290 -9.066  -26.433 -0.658 0.789  -0.036 C5  SYX 3  
SYX C6  C3  C 0 1 N N R N N N 12.878 -8.896  -25.873 -1.708 -0.191 -0.491 C6  SYX 4  
SYX C7  C4  C 0 1 N N N N N N 12.405 -10.110 -25.158 -2.103 -1.115 0.677  C7  SYX 5  
SYX C8  C5  C 0 1 N N N N N N 12.227 -9.676  -23.719 -3.627 -0.890 0.839  C8  SYX 6  
SYX N   N2  N 0 1 N N N N N N 14.835 -7.508  -30.388 3.230  -0.417 0.123  N   SYX 7  
SYX C   C6  C 0 1 N N N N N N 14.888 -8.394  -31.562 4.544  -0.693 -0.475 C   SYX 8  
SYX O   O1  O 0 1 N N N N N N 15.131 -9.699  -25.822 -0.909 1.976  -0.006 O   SYX 9  
SYX C1  C7  C 0 1 N N N N N N 13.568 -7.665  -29.670 2.881  1.008  -0.005 C1  SYX 10 
SYX C2  C8  C 0 1 N N N N N N 13.754 -7.422  -28.194 1.598  1.288  0.785  C2  SYX 11 
SYX C3  C9  C 0 1 N N N N N N 15.643 -8.900  -28.521 0.883  -1.086 0.314  C3  SYX 12 
SYX C9  C10 C 0 1 N N N N N N 12.043 -8.213  -23.840 -4.019 -0.316 -0.546 C9  SYX 13 
SYX O1  O2  O 0 1 N N N N N N 12.838 -7.798  -24.956 -2.892 0.514  -0.899 O1  SYX 14 
SYX H1  H1  H 0 1 N N N N N N 16.844 -8.038  -30.084 2.041  -1.009 -1.504 H1  SYX 15 
SYX H2  H2  H 0 1 N N N N N N 16.176 -6.853  -28.911 2.504  -2.320 -0.392 H2  SYX 16 
SYX H3  H3  H 0 1 N N N N N N 12.198 -8.695  -26.714 -1.324 -0.786 -1.321 H3  SYX 17 
SYX H4  H4  H 0 1 N N N N N N 11.449 -10.457 -25.578 -1.896 -2.156 0.428  H4  SYX 18 
SYX H5  H5  H 0 1 N N N N N N 13.151 -10.915 -25.229 -1.576 -0.827 1.586  H5  SYX 19 
SYX H6  H6  H 0 1 N N N N N N 11.343 -10.151 -23.268 -4.141 -1.832 1.030  H6  SYX 20 
SYX H7  H7  H 0 1 N N N N N N 13.118 -9.915  -23.120 -3.831 -0.170 1.632  H7  SYX 21 
SYX H9  H9  H 0 1 N N N N N N 15.847 -8.257  -32.082 5.305  -0.099 0.031  H9  SYX 22 
SYX H10 H10 H 0 1 N N N N N N 14.794 -9.440  -31.236 4.777  -1.752 -0.366 H10 SYX 23 
SYX H11 H11 H 0 1 N N N N N N 14.062 -8.147  -32.245 4.523  -0.432 -1.533 H11 SYX 24 
SYX H12 H12 H 0 1 N N N N N N 12.838 -6.943  -30.065 3.695  1.619  0.386  H12 SYX 25 
SYX H13 H13 H 0 1 N N N N N N 13.192 -8.687  -29.822 2.718  1.249  -1.056 H13 SYX 26 
SYX H14 H14 H 0 1 N N N N N N 14.270 -6.462  -28.042 1.271  2.312  0.600  H14 SYX 27 
SYX H15 H15 H 0 1 N N N N N N 12.771 -7.393  -27.700 1.786  1.148  1.849  H15 SYX 28 
SYX H16 H16 H 0 1 N N N N N N 15.337 -9.789  -29.092 1.002  -1.451 1.334  H16 SYX 29 
SYX H17 H17 H 0 1 N N N N N N 16.539 -9.136  -27.928 0.082  -1.634 -0.183 H17 SYX 30 
SYX H18 H18 H 0 1 N N N N N N 12.382 -7.709  -22.923 -4.147 -1.119 -1.272 H18 SYX 31 
SYX H19 H19 H 0 1 N N N N N N 10.984 -7.976  -24.018 -4.929 0.280  -0.470 H19 SYX 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SYX C  N   SING N N 1  
SYX N  C1  SING N N 2  
SYX N  C4  SING N N 3  
SYX C1 C2  SING N N 4  
SYX C4 C3  SING N N 5  
SYX C3 N1  SING N N 6  
SYX C2 N1  SING N N 7  
SYX N1 C5  SING N N 8  
SYX C5 C6  SING N N 9  
SYX C5 O   DOUB N N 10 
SYX C6 C7  SING N N 11 
SYX C6 O1  SING N N 12 
SYX C7 C8  SING N N 13 
SYX O1 C9  SING N N 14 
SYX C9 C8  SING N N 15 
SYX C4 H1  SING N N 16 
SYX C4 H2  SING N N 17 
SYX C6 H3  SING N N 18 
SYX C7 H4  SING N N 19 
SYX C7 H5  SING N N 20 
SYX C8 H6  SING N N 21 
SYX C8 H7  SING N N 22 
SYX C  H9  SING N N 23 
SYX C  H10 SING N N 24 
SYX C  H11 SING N N 25 
SYX C1 H12 SING N N 26 
SYX C1 H13 SING N N 27 
SYX C2 H14 SING N N 28 
SYX C2 H15 SING N N 29 
SYX C3 H16 SING N N 30 
SYX C3 H17 SING N N 31 
SYX C9 H18 SING N N 32 
SYX C9 H19 SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SYX SMILES           ACDLabs              12.01 "O=C(N1CCN(C)CC1)C1CCCO1"                                                            
SYX InChI            InChI                1.06  "InChI=1S/C10H18N2O2/c1-11-4-6-12(7-5-11)10(13)9-3-2-8-14-9/h9H,2-8H2,1H3/t9-/m1/s1" 
SYX InChIKey         InChI                1.06  ZSHARPJAQXGCMB-SECBINFHSA-N                                                          
SYX SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)C(=O)[C@H]2CCCO2"                                                        
SYX SMILES           CACTVS               3.385 "CN1CCN(CC1)C(=O)[CH]2CCCO2"                                                         
SYX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)[C@H]2CCCO2"                                                        
SYX SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)C2CCCO2"                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SYX "SYSTEMATIC NAME" ACDLabs              12.01 "(4-methylpiperazin-1-yl)[(2R)-oxolan-2-yl]methanone"     
SYX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4-methylpiperazin-1-yl)-[(2~{R})-oxolan-2-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SYX "Create component" 2023-08-28 RCSB 
SYX "Initial release"  2023-11-29 RCSB 
# 
