data_YFX
# 
_chem_comp.id                                    YFX 
_chem_comp.name                                  "[2-fluoro-4-(2,2,2-trifluoroethoxy)phenyl]methyl 2-[(5S)-4,5,6,7-tetrahydro-1H-benzotriazole-5-carbonyl]-2,7-diazaspiro[3.5]nonane-7-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H27 F4 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        525.496 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YFX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G59 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YFX C10 C1  C 0 1 N N N N N N -11.485 12.682 51.615 5.789  -0.845 -1.617 C10 YFX 1  
YFX C11 C2  C 0 1 N N S N N N -10.762 11.773 52.648 6.832  -1.130 -0.568 C11 YFX 2  
YFX O12 O1  O 0 1 N N N N N N -11.279 13.885 51.544 6.127  -0.585 -2.753 O12 YFX 3  
YFX C13 C3  C 0 1 N N N N N N -9.205  11.995 52.564 8.226  -1.029 -1.193 C13 YFX 4  
YFX C15 C4  C 0 1 N N N N N N -11.331 12.038 54.085 6.705  -0.110 0.571  C15 YFX 5  
YFX C16 C5  C 0 1 Y N N N N N -10.497 11.268 55.048 7.901  -0.256 1.474  C16 YFX 6  
YFX C17 C6  C 0 1 Y N N N N N -9.167  10.819 54.787 9.041  -0.903 1.129  C17 YFX 7  
YFX C21 C7  C 0 1 N N N N N N -15.251 7.500  47.694 -0.629 2.200  -0.576 C21 YFX 8  
YFX C23 C8  C 0 1 N N N N N N -14.792 5.710  46.064 -2.910 2.543  0.036  C23 YFX 9  
YFX C25 C9  C 0 1 Y N N N N N -13.623 5.374  45.164 -4.196 1.767  0.154  C25 YFX 10 
YFX C26 C10 C 0 1 Y N N N N N -12.983 4.135  45.382 -5.352 2.405  0.572  C26 YFX 11 
YFX C27 C11 C 0 1 Y N N N N N -11.907 3.698  44.552 -6.534 1.694  0.681  C27 YFX 12 
YFX C28 C12 C 0 1 Y N N N N N -11.561 4.556  43.451 -6.559 0.342  0.371  C28 YFX 13 
YFX C1  C13 C 0 1 N N N N N N -12.850 10.642 50.596 3.209  -0.672 -2.004 C1  YFX 14 
YFX N2  N1  N 0 1 N N N N N N -12.426 12.086 50.698 4.481  -0.882 -1.294 N2  YFX 15 
YFX C3  C14 C 0 1 N N N N N N -13.286 12.579 49.590 3.698  -1.153 -0.078 C3  YFX 16 
YFX C4  C15 C 0 1 N N N N N N -13.663 11.054 49.333 2.593  -0.272 -0.663 C4  YFX 17 
YFX C5  C16 C 0 1 N N N N N N -13.267 8.949  48.058 1.736  2.013  -1.171 C5  YFX 18 
YFX C6  C17 C 0 1 N N N N N N -13.043 10.458 48.034 2.736  1.210  -0.329 C6  YFX 19 
YFX C7  C18 C 0 1 N N N N N N -15.159 10.737 49.449 1.183  -0.810 -0.440 C7  YFX 20 
YFX C8  C19 C 0 1 N N N N N N -15.343 9.237  49.470 0.195  0.007  -1.281 C8  YFX 21 
YFX N9  N2  N 0 1 N N N N N N -14.748 8.704  48.218 0.398  1.434  -0.994 N9  YFX 22 
YFX C14 C20 C 0 1 N N N N N N -8.382  11.073 53.529 9.273  -1.561 -0.206 C14 YFX 23 
YFX N18 N3  N 0 1 Y N N N N N -8.800  10.125 55.955 9.862  -0.821 2.190  N18 YFX 24 
YFX N19 N4  N 0 1 Y N N N N N -9.835  10.157 56.856 9.251  -0.162 3.116  N19 YFX 25 
YFX N20 N5  N 0 1 Y N N N N N -10.845 10.831 56.346 8.076  0.189  2.714  N20 YFX 26 
YFX O22 O2  O 0 1 N N N N N N -14.322 6.765  46.930 -1.851 1.659  -0.418 O22 YFX 27 
YFX O24 O3  O 0 1 N N N N N N -16.393 7.124  47.928 -0.451 3.379  -0.342 O24 YFX 28 
YFX C29 C21 C 0 1 Y N N N N N -12.181 5.767  43.265 -5.399 -0.293 -0.048 C29 YFX 29 
YFX C30 C22 C 0 1 Y N N N N N -13.175 6.169  44.129 -4.222 0.421  -0.161 C30 YFX 30 
YFX O31 O4  O 0 1 N N N N N N -10.538 4.137  42.649 -7.719 -0.359 0.477  O31 YFX 31 
YFX C32 C23 C 0 1 N N N N N N -9.838  3.053  43.149 -7.671 -1.747 0.142  C32 YFX 32 
YFX C33 C24 C 0 1 N N N N N N -10.307 1.828  42.286 -9.059 -2.364 0.321  C33 YFX 33 
YFX F34 F1  F 0 1 N N N N N N -10.453 2.058  40.950 -9.971 -1.712 -0.517 F34 YFX 34 
YFX F35 F2  F 0 1 N N N N N N -9.371  0.851  42.422 -9.012 -3.723 -0.007 F35 YFX 35 
YFX F36 F3  F 0 1 N N N N N N -11.466 1.355  42.751 -9.465 -2.220 1.653  F36 YFX 36 
YFX F37 F4  F 0 1 N N N N N N -13.483 3.358  46.377 -5.326 3.721  0.874  F37 YFX 37 
YFX H50 H1  H 0 1 N N N N N N -10.970 10.725 52.388 6.684  -2.135 -0.173 H50 YFX 38 
YFX H52 H2  H 0 1 N N N N N N -8.881  11.794 51.532 8.257  -1.620 -2.109 H52 YFX 39 
YFX H51 H3  H 0 1 N N N N N N -8.990  13.043 52.818 8.444  0.013  -1.427 H51 YFX 40 
YFX H55 H4  H 0 1 N N N N N N -11.278 13.112 54.317 6.676  0.899  0.159  H55 YFX 41 
YFX H56 H5  H 0 1 N N N N N N -12.377 11.702 54.142 5.793  -0.303 1.136  H56 YFX 42 
YFX H58 H6  H 0 1 N N N N N N -15.087 4.830  46.655 -3.039 3.353  -0.682 H58 YFX 43 
YFX H59 H7  H 0 1 N N N N N N -15.649 6.056  45.468 -2.645 2.958  1.008  H59 YFX 44 
YFX H60 H8  H 0 1 N N N N N N -11.381 2.774  44.741 -7.436 2.190  1.008  H60 YFX 45 
YFX H39 H9  H 0 1 N N N N N N -12.030 9.934  50.405 3.245  0.144  -2.726 H39 YFX 46 
YFX H38 H10 H 0 1 N N N N N N -13.459 10.280 51.438 2.787  -1.586 -2.421 H38 YFX 47 
YFX H40 H11 H 0 1 N N N N N N -14.126 13.216 49.905 3.409  -2.198 0.029  H40 YFX 48 
YFX H41 H12 H 0 1 N N N N N N -12.744 13.067 48.766 4.147  -0.744 0.827  H41 YFX 49 
YFX H43 H13 H 0 1 N N N N N N -12.914 8.503  47.116 1.731  3.052  -0.840 H43 YFX 50 
YFX H42 H14 H 0 1 N N N N N N -12.721 8.503  48.902 2.021  1.964  -2.222 H42 YFX 51 
YFX H45 H15 H 0 1 N N N N N N -13.533 10.895 47.151 2.530  1.367  0.729  H45 YFX 52 
YFX H44 H16 H 0 1 N N N N N N -11.965 10.676 48.000 3.750  1.538  -0.557 H44 YFX 53 
YFX H46 H17 H 0 1 N N N N N N -15.557 11.171 50.378 1.141  -1.856 -0.743 H46 YFX 54 
YFX H47 H18 H 0 1 N N N N N N -15.694 11.162 48.587 0.922  -0.724 0.614  H47 YFX 55 
YFX H48 H19 H 0 1 N N N N N N -14.831 8.807  50.343 0.372  -0.182 -2.340 H48 YFX 56 
YFX H49 H20 H 0 1 N N N N N N -16.414 8.989  49.514 -0.826 -0.275 -1.023 H49 YFX 57 
YFX H54 H21 H 0 1 N N N N N N -8.174  10.115 53.029 9.168  -2.641 -0.106 H54 YFX 58 
YFX H53 H22 H 0 1 N N N N N N -7.433  11.567 53.785 10.273 -1.320 -0.565 H53 YFX 59 
YFX H57 H23 H 0 1 N N N N N N -7.919  9.677  56.106 10.756 -1.193 2.250  H57 YFX 60 
YFX H61 H24 H 0 1 N N N N N N -11.889 6.403  42.442 -5.417 -1.346 -0.289 H61 YFX 61 
YFX H62 H25 H 0 1 N N N N N N -13.621 7.143  43.991 -3.321 -0.073 -0.491 H62 YFX 62 
YFX H64 H26 H 0 1 N N N N N N -8.755  3.210  43.040 -7.355 -1.859 -0.896 H64 YFX 63 
YFX H63 H27 H 0 1 N N N N N N -10.081 2.893  44.210 -6.960 -2.254 0.794  H63 YFX 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YFX C1  N2  SING N N 1  
YFX C1  C4  SING N N 2  
YFX N2  C3  SING N N 3  
YFX N2  C10 SING N N 4  
YFX C3  C4  SING N N 5  
YFX C4  C6  SING N N 6  
YFX C4  C7  SING N N 7  
YFX C5  C6  SING N N 8  
YFX C5  N9  SING N N 9  
YFX C7  C8  SING N N 10 
YFX C8  N9  SING N N 11 
YFX N9  C21 SING N N 12 
YFX C10 C11 SING N N 13 
YFX C10 O12 DOUB N N 14 
YFX C11 C13 SING N N 15 
YFX C11 C15 SING N N 16 
YFX C13 C14 SING N N 17 
YFX C14 C17 SING N N 18 
YFX C15 C16 SING N N 19 
YFX C16 C17 DOUB Y N 20 
YFX C16 N20 SING Y N 21 
YFX C17 N18 SING Y N 22 
YFX N18 N19 SING Y N 23 
YFX N19 N20 DOUB Y N 24 
YFX C21 O22 SING N N 25 
YFX C21 O24 DOUB N N 26 
YFX O22 C23 SING N N 27 
YFX C23 C25 SING N N 28 
YFX C25 C26 DOUB Y N 29 
YFX C25 C30 SING Y N 30 
YFX C26 C27 SING Y N 31 
YFX C26 F37 SING N N 32 
YFX C27 C28 DOUB Y N 33 
YFX C28 C29 SING Y N 34 
YFX C28 O31 SING N N 35 
YFX C29 C30 DOUB Y N 36 
YFX O31 C32 SING N N 37 
YFX C32 C33 SING N N 38 
YFX C33 F34 SING N N 39 
YFX C33 F35 SING N N 40 
YFX C33 F36 SING N N 41 
YFX C11 H50 SING N N 42 
YFX C13 H52 SING N N 43 
YFX C13 H51 SING N N 44 
YFX C15 H55 SING N N 45 
YFX C15 H56 SING N N 46 
YFX C23 H58 SING N N 47 
YFX C23 H59 SING N N 48 
YFX C27 H60 SING N N 49 
YFX C1  H39 SING N N 50 
YFX C1  H38 SING N N 51 
YFX C3  H40 SING N N 52 
YFX C3  H41 SING N N 53 
YFX C5  H43 SING N N 54 
YFX C5  H42 SING N N 55 
YFX C6  H45 SING N N 56 
YFX C6  H44 SING N N 57 
YFX C7  H46 SING N N 58 
YFX C7  H47 SING N N 59 
YFX C8  H48 SING N N 60 
YFX C8  H49 SING N N 61 
YFX C14 H54 SING N N 62 
YFX C14 H53 SING N N 63 
YFX N18 H57 SING N N 64 
YFX C29 H61 SING N N 65 
YFX C30 H62 SING N N 66 
YFX C32 H64 SING N N 67 
YFX C32 H63 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YFX SMILES           ACDLabs              12.01 "FC(F)(F)COc1ccc(COC(=O)N2CCC3(CC2)CN(C3)C(=O)C2CCc3[NH]nnc3C2)c(F)c1"                                                                                                               
YFX InChI            InChI                1.06  "InChI=1S/C24H27F4N5O4/c25-18-10-17(37-14-24(26,27)28)3-1-16(18)11-36-22(35)32-7-5-23(6-8-32)12-33(13-23)21(34)15-2-4-19-20(9-15)30-31-29-19/h1,3,10,15H,2,4-9,11-14H2,(H,29,30,31)" 
YFX InChIKey         InChI                1.06  HFJGRHYPTCNSKW-UHFFFAOYSA-N                                                                                                                                                          
YFX SMILES_CANONICAL CACTVS               3.385 "Fc1cc(OCC(F)(F)F)ccc1COC(=O)N2CCC3(CC2)CN(C3)C(=O)[C@H]4CCc5[nH]nnc5C4"                                                                                                             
YFX SMILES           CACTVS               3.385 "Fc1cc(OCC(F)(F)F)ccc1COC(=O)N2CCC3(CC2)CN(C3)C(=O)[CH]4CCc5[nH]nnc5C4"                                                                                                              
YFX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1OCC(F)(F)F)F)COC(=O)N2CCC3(CC2)CN(C3)C(=O)[C@H]4CCc5c(nn[nH]5)C4"                                                                                                         
YFX SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1OCC(F)(F)F)F)COC(=O)N2CCC3(CC2)CN(C3)C(=O)C4CCc5c(nn[nH]5)C4"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YFX "SYSTEMATIC NAME" ACDLabs              12.01 "[2-fluoro-4-(2,2,2-trifluoroethoxy)phenyl]methyl 2-[(5S)-4,5,6,7-tetrahydro-1H-benzotriazole-5-carbonyl]-2,7-diazaspiro[3.5]nonane-7-carboxylate"                   
YFX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-fluoranyl-4-[2,2,2-tris(fluoranyl)ethoxy]phenyl]methyl 2-[[(5~{S})-4,5,6,7-tetrahydro-1~{H}-benzotriazol-5-yl]carbonyl]-2,7-diazaspiro[3.5]nonane-7-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YFX "Create component" 2023-06-13 RCSB 
YFX "Initial release"  2024-12-18 RCSB 
# 
