data_YOX
# 
_chem_comp.id                                    YOX 
_chem_comp.name                                  "2-cyclopentyl-7-iodanyl-1~{H}-indole-3-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H13 I N2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-08 
_chem_comp.pdbx_modified_date                    2024-09-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.171 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YOX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R8E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YOX C1  C1  C 0 1 Y N N N N N 4.684 22.741 29.643 -0.078 -3.219 0.010  C1  YOX 1  
YOX C10 C2  C 0 1 N N N N N N 4.010 24.708 27.170 3.136  -2.463 -0.004 C10 YOX 2  
YOX C11 C3  C 0 1 N N N N N N 5.215 23.559 23.821 3.303  1.530  1.227  C11 YOX 3  
YOX C12 C4  C 0 1 N N N N N N 5.751 24.316 22.598 3.887  2.878  0.770  C12 YOX 4  
YOX C13 C5  C 0 1 N N N N N N 7.138 24.746 22.933 4.181  2.743  -0.739 C13 YOX 5  
YOX C14 C6  C 0 1 N N N N N N 7.429 24.179 24.326 3.231  1.614  -1.210 C14 YOX 6  
YOX C2  C7  C 0 1 Y N N N N N 5.188 21.823 30.535 -1.455 -3.254 0.014  C2  YOX 7  
YOX C3  C8  C 0 1 Y N N N N N 6.312 21.041 30.199 -2.186 -2.075 0.010  C3  YOX 8  
YOX C4  C9  C 0 1 Y N N N N N 6.931 21.165 28.979 -1.547 -0.854 0.002  C4  YOX 9  
YOX C5  C10 C 0 1 Y N N N N N 6.418 22.099 28.068 -0.157 -0.797 -0.002 C5  YOX 10 
YOX C6  C11 C 0 1 Y N N N N N 5.294 22.878 28.401 0.581  -1.992 0.002  C6  YOX 11 
YOX C7  C12 C 0 1 Y N N N N N 5.952 23.443 26.311 2.017  -0.228 -0.012 C7  YOX 12 
YOX C8  C13 C 0 1 Y N N N N N 5.018 23.716 27.267 2.000  -1.591 -0.005 C8  YOX 13 
YOX C9  C14 C 0 1 N N N N N N 6.046 24.120 24.974 3.261  0.623  -0.020 C9  YOX 14 
YOX I1  I1  I 0 1 N N N N N N 8.611 19.953 28.555 -2.669 0.916  -0.004 I1  YOX 15 
YOX N1  N1  N 0 1 Y N N N N N 6.793 22.462 26.789 0.746  0.246  -0.009 N1  YOX 16 
YOX N2  N2  N 0 1 N N N N N N 3.250 25.568 27.100 4.037  -3.154 -0.002 N2  YOX 17 
YOX H1  H1  H 0 1 N N N N N N 3.828 23.346 29.903 0.488  -4.139 0.017  H1  YOX 18 
YOX H7  H2  H 0 1 N N N N N N 5.371 22.476 23.713 3.941  1.086  1.990  H7  YOX 19 
YOX H6  H3  H 0 1 N N N N N N 4.144 23.762 23.972 2.296  1.674  1.619  H6  YOX 20 
YOX H9  H4  H 0 1 N N N N N N 5.761 23.656 21.718 3.164  3.676  0.940  H9  YOX 21 
YOX H8  H5  H 0 1 N N N N N N 5.122 25.194 22.390 4.809  3.088  1.312  H8  YOX 22 
YOX H11 H6  H 0 1 N N N N N N 7.851 24.343 22.199 3.952  3.674  -1.257 H11 YOX 23 
YOX H10 H7  H 0 1 N N N N N N 7.206 25.844 22.945 5.220  2.460  -0.901 H10 YOX 24 
YOX H12 H8  H 0 1 N N N N N N 8.101 24.843 24.890 2.223  1.997  -1.368 H12 YOX 25 
YOX H13 H9  H 0 1 N N N N N N 7.876 23.176 24.258 3.611  1.144  -2.118 H13 YOX 26 
YOX H2  H10 H 0 1 N N N N N N 4.719 21.700 31.500 -1.968 -4.205 0.020  H2  YOX 27 
YOX H3  H11 H 0 1 N N N N N N 6.694 20.330 30.916 -3.265 -2.114 0.013  H3  YOX 28 
YOX H5  H12 H 0 1 N N N N N N 5.721 25.161 25.119 4.151  -0.004 -0.066 H5  YOX 29 
YOX H4  H13 H 0 1 N N N N N N 7.562 22.070 26.284 0.506  1.186  -0.013 H4  YOX 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YOX C1  C2  DOUB Y N 1  
YOX C1  C6  SING Y N 2  
YOX C2  C3  SING Y N 3  
YOX C3  C4  DOUB Y N 4  
YOX C4  C5  SING Y N 5  
YOX C4  I1  SING N N 6  
YOX C5  C6  DOUB Y N 7  
YOX C5  N1  SING Y N 8  
YOX C6  C8  SING Y N 9  
YOX N1  C7  SING Y N 10 
YOX C7  C8  DOUB Y N 11 
YOX C7  C9  SING N N 12 
YOX C8  C10 SING N N 13 
YOX C9  C11 SING N N 14 
YOX C9  C14 SING N N 15 
YOX C10 N2  TRIP N N 16 
YOX C11 C12 SING N N 17 
YOX C12 C13 SING N N 18 
YOX C13 C14 SING N N 19 
YOX C1  H1  SING N N 20 
YOX C11 H7  SING N N 21 
YOX C11 H6  SING N N 22 
YOX C12 H9  SING N N 23 
YOX C12 H8  SING N N 24 
YOX C13 H11 SING N N 25 
YOX C13 H10 SING N N 26 
YOX C14 H12 SING N N 27 
YOX C14 H13 SING N N 28 
YOX C2  H2  SING N N 29 
YOX C3  H3  SING N N 30 
YOX C9  H5  SING N N 31 
YOX N1  H4  SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YOX InChI            InChI                1.06  "InChI=1S/C14H13IN2/c15-12-7-3-6-10-11(8-16)13(17-14(10)12)9-4-1-2-5-9/h3,6-7,9,17H,1-2,4-5H2" 
YOX InChIKey         InChI                1.06  BBYDGWHLEKHRAJ-UHFFFAOYSA-N                                                                    
YOX SMILES_CANONICAL CACTVS               3.385 "Ic1cccc2c1[nH]c(C3CCCC3)c2C#N"                                                                
YOX SMILES           CACTVS               3.385 "Ic1cccc2c1[nH]c(C3CCCC3)c2C#N"                                                                
YOX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c([nH]c2c(c1)I)C3CCCC3)C#N"                                                            
YOX SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(c([nH]c2c(c1)I)C3CCCC3)C#N"                                                            
# 
_pdbx_chem_comp_identifier.comp_id           YOX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-cyclopentyl-7-iodanyl-1~{H}-indole-3-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YOX "Create component" 2023-12-08 PDBE 
YOX "Initial release"  2024-09-25 RCSB 
# 
