data_39Y
# 
_chem_comp.id                                    39Y 
_chem_comp.name                                  "(2E,5S)-5-methylhept-2-enoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H14 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        142.196 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     39Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4U0G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
39Y O   O2  O 0 1 N N N N N N -75.832 16.514 54.470 -2.964 -1.193 0.166  O   39Y 1  
39Y C8  C9  C 0 1 N N N N N N -75.118 15.502 54.494 -2.863 0.018  0.139  C8  39Y 2  
39Y C9  C10 C 0 1 N N N N N N -73.756 15.464 53.927 -1.576 0.641  -0.203 C9  39Y 3  
39Y C10 C11 C 0 1 N N N N N N -73.225 16.527 53.379 -0.522 -0.121 -0.483 C10 39Y 4  
39Y C11 C12 C 0 1 N N N N N N -71.855 16.573 52.794 0.797  0.517  -0.834 C11 39Y 5  
39Y C12 C13 C 0 1 N N S N N N -71.120 17.864 53.110 1.886  -0.016 0.099  C12 39Y 6  
39Y C13 C14 C 0 1 N N N N N N -70.930 18.002 54.617 2.082  -1.513 -0.149 C13 39Y 7  
39Y C14 C15 C 0 1 N N N N N N -69.824 17.918 52.394 3.198  0.723  -0.174 C14 39Y 8  
39Y C15 C16 C 0 1 N N N N N N -69.827 17.611 50.917 4.254  0.279  0.841  C15 39Y 9  
39Y H14 H10 H 0 1 N N N N N N -73.189 14.545 53.965 -1.487 1.717  -0.228 H14 39Y 10 
39Y H15 H11 H 0 1 N N N N N N -73.818 17.429 53.349 -0.611 -1.197 -0.459 H15 39Y 11 
39Y H16 H12 H 0 1 N N N N N N -71.273 15.731 53.196 1.054  0.278  -1.866 H16 39Y 12 
39Y H17 H13 H 0 1 N N N N N N -71.936 16.474 51.701 0.719  1.599  -0.721 H17 39Y 13 
39Y H18 H14 H 0 1 N N N N N N -71.743 18.703 52.768 1.587  0.145  1.135  H18 39Y 14 
39Y H21 H15 H 0 1 N N N N N N -70.397 18.939 54.836 1.148  -2.039 0.045  H21 39Y 15 
39Y H19 H16 H 0 1 N N N N N N -71.913 18.015 55.111 2.381  -1.673 -1.185 H19 39Y 16 
39Y H20 H17 H 0 1 N N N N N N -70.343 17.151 54.992 2.858  -1.892 0.516  H20 39Y 17 
39Y H23 H18 H 0 1 N N N N N N -69.422 18.934 52.518 3.543  0.491  -1.181 H23 39Y 18 
39Y H22 H19 H 0 1 N N N N N N -69.150 17.196 52.879 3.036  1.797  -0.084 H22 39Y 19 
39Y H26 H20 H 0 1 N N N N N N -68.803 17.689 50.524 3.909  0.512  1.849  H26 39Y 20 
39Y H24 H21 H 0 1 N N N N N N -70.205 16.591 50.756 4.416  -0.795 0.751  H24 39Y 21 
39Y H25 H22 H 0 1 N N N N N N -70.476 18.329 50.395 5.188  0.805  0.647  H25 39Y 22 
39Y OXT OXT O 0 1 N Y N N N N -75.540 14.348 55.033 -3.932 0.790  0.417  OXT 39Y 23 
39Y HXT HXT H 0 1 N Y N N N N -76.424 14.457 55.364 -4.758 0.335  0.633  HXT 39Y 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
39Y O   C8  DOUB N N 1  
39Y C8  C9  SING N N 2  
39Y C9  C10 DOUB N E 3  
39Y C10 C11 SING N N 4  
39Y C11 C12 SING N N 5  
39Y C12 C13 SING N N 6  
39Y C12 C14 SING N N 7  
39Y C14 C15 SING N N 8  
39Y C9  H14 SING N N 9  
39Y C10 H15 SING N N 10 
39Y C11 H16 SING N N 11 
39Y C11 H17 SING N N 12 
39Y C12 H18 SING N N 13 
39Y C13 H21 SING N N 14 
39Y C13 H19 SING N N 15 
39Y C13 H20 SING N N 16 
39Y C14 H23 SING N N 17 
39Y C14 H22 SING N N 18 
39Y C15 H26 SING N N 19 
39Y C15 H24 SING N N 20 
39Y C15 H25 SING N N 21 
39Y C8  OXT SING N N 22 
39Y OXT HXT SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
39Y SMILES           ACDLabs              12.01 "O=C(O)/C=C/CC(CC)C"                                                                  
39Y InChI            InChI                1.03  "InChI=1S/C8H14O2/c1-3-7(2)5-4-6-8(9)10/h4,6-7H,3,5H2,1-2H3,(H,9,10)/b6-4+/t7-/m0/s1" 
39Y InChIKey         InChI                1.03  WCNAROBWFNTKGN-KNIZRNDPSA-N                                                           
39Y SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C)C/C=C/C(O)=O"                                                              
39Y SMILES           CACTVS               3.385 "CC[CH](C)CC=CC(O)=O"                                                                 
39Y SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC[C@H](C)C/C=C/C(=O)O"                                                              
39Y SMILES           "OpenEye OEToolkits" 1.9.2 "CCC(C)CC=CC(=O)O"                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
39Y "SYSTEMATIC NAME" ACDLabs              12.01 "(2E,5S)-5-methylhept-2-enoic acid" 
39Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(E,5S)-5-methylhept-2-enoic acid"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
39Y "Create component"  2014-07-14 RCSB 
39Y "Modify descriptor" 2014-09-05 RCSB 
39Y "Initial release"   2014-10-08 RCSB 
39Y "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            39Y 
_pdbx_chem_comp_pcm.modified_residue_id                WFP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   N 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
