data_3XY
#

_chem_comp.id                                   3XY
_chem_comp.name                                 "5-[(4-{[6-(2,2,2-trifluoroethyl)thieno[2,3-d]pyrimidin-4-yl]amino}piperidin-1-yl)methyl]-1H-indole-2-carbonitrile"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H21 F3 N6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        MI-136
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-12-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       470.513
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3XY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4X5Z
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3XY  C4   C1   C  0  1  Y  N  N  13.392   7.675  12.558  -4.966  -1.589  -0.485  C4   3XY   1  
3XY  C5   C2   C  0  1  Y  N  N  13.690   9.009  12.422  -3.823  -0.896  -0.078  C5   3XY   2  
3XY  C6   C3   C  0  1  Y  N  N  12.651   9.868  12.075  -2.564  -1.487  -0.358  C6   3XY   3  
3XY  N1   N1   N  0  1  Y  N  N  11.401   9.371  11.803  -2.529  -2.654  -0.985  N1   3XY   4  
3XY  N3   N2   N  0  1  Y  N  N  12.149   7.161  12.330  -4.828  -2.761  -1.116  N3   3XY   5  
3XY  FAB  F1   F  0  1  N  N  N  19.338   7.706  12.458  -7.035   2.496  -0.737  FAB  3XY   6  
3XY  CBG  C4   C  0  1  N  N  N  18.045   7.685  12.191  -6.176   2.939   0.275  CBG  3XY   7  
3XY  FAC  F2   F  0  1  N  N  N  17.697   6.422  11.929  -4.925   3.242  -0.275  FAC  3XY   8  
3XY  FAD  F3   F  0  1  N  N  N  17.825   8.417  11.128  -6.712   4.083   0.874  FAD  3XY   9  
3XY  CAQ  C5   C  0  1  N  N  N  17.225   8.203  13.370  -6.018   1.839   1.326  CAQ  3XY  10  
3XY  CAY  C6   C  0  1  Y  N  N  15.747   8.162  13.027  -5.441   0.605   0.681  CAY  3XY  11  
3XY  SAV  S1   S  0  1  Y  N  N  14.787   6.771  13.074  -6.400  -0.675  -0.037  SAV  3XY  12  
3XY  CAK  C7   C  0  1  Y  N  N  14.999   9.264  12.695  -4.150   0.352   0.584  CAK  3XY  13  
3XY  C2   C8   C  0  1  Y  N  N  11.123   8.026  11.983  -3.640  -3.269  -1.349  C2   3XY  14  
3XY  NAT  N3   N  0  1  N  N  N  12.846  11.207  11.920  -1.392  -0.855   0.016  NAT  3XY  15  
3XY  CBE  C9   C  0  1  N  N  N  11.716  12.102  11.545  -0.098  -1.476  -0.279  CBE  3XY  16  
3XY  CAM  C10  C  0  1  N  N  N  11.809  13.280  12.499   0.982  -0.394  -0.358  CAM  3XY  17  
3XY  CAO  C11  C  0  1  N  N  N  10.761  14.358  12.179   2.341  -1.054  -0.607  CAO  3XY  18  
3XY  CAL  C12  C  0  1  N  N  N  11.825  12.526  10.059   0.261  -2.464   0.834  CAL  3XY  19  
3XY  CAN  C13  C  0  1  N  N  N  10.931  13.723   9.793   1.640  -3.064   0.551  CAN  3XY  20  
3XY  NBF  N4   N  0  1  N  N  N  11.047  14.848  10.798   2.639  -1.989   0.485  NBF  3XY  21  
3XY  CAP  C14  C  0  1  N  N  N  10.069  15.907  10.381   3.995  -2.538   0.353  CAP  3XY  22  
3XY  CAW  C15  C  0  1  Y  N  N  10.153  17.126  11.206   5.004  -1.433   0.535  CAW  3XY  23  
3XY  CAI  C16  C  0  1  Y  N  N   9.020  17.666  11.862   5.426  -0.718  -0.548  CAI  3XY  24  
3XY  CBA  C17  C  0  1  Y  N  N   9.107  18.834  12.568   6.363   0.310  -0.382  CBA  3XY  25  
3XY  CAJ  C18  C  0  1  Y  N  N   8.180  19.528  13.289   6.986   1.212  -1.278  CAJ  3XY  26  
3XY  CAX  C19  C  0  1  Y  N  N   8.807  20.595  13.818   7.822   2.003  -0.555  CAX  3XY  27  
3XY  CAE  C20  C  0  1  N  N  N   8.330  21.640  14.632   8.641   3.050  -1.087  CAE  3XY  28  
3XY  NAA  N5   N  0  1  N  N  N   7.923  22.452  15.280   9.292   3.880  -1.509  NAA  3XY  29  
3XY  NAU  N6   N  0  1  Y  N  N  10.068  20.572  13.484   7.754   1.637   0.775  NAU  3XY  30  
3XY  CBB  C21  C  0  1  Y  N  N  10.264  19.493  12.705   6.862   0.597   0.903  CBB  3XY  31  
3XY  CAH  C22  C  0  1  Y  N  N  11.399  19.025  12.103   6.417  -0.146   1.992  CAH  3XY  32  
3XY  CAG  C23  C  0  1  Y  N  N  11.361  17.867  11.319   5.491  -1.149   1.804  CAG  3XY  33  
3XY  H1   H1   H  0  1  N  N  N  17.413   7.571  14.251  -5.349   2.183   2.115  H1   3XY  34  
3XY  H2   H2   H  0  1  N  N  N  17.520   9.239  13.592  -6.992   1.603   1.754  H2   3XY  35  
3XY  H3   H3   H  0  1  N  N  N  15.418  10.259  12.653  -3.395   1.023   0.967  H3   3XY  36  
3XY  H4   H4   H  0  1  N  N  N  10.117   7.655  11.854  -3.568  -4.219  -1.858  H4   3XY  37  
3XY  H5   H5   H  0  1  N  N  N  13.543  11.314  11.210  -1.427  -0.001   0.474  H5   3XY  38  
3XY  H6   H6   H  0  1  N  N  N  10.760  11.580  11.700  -0.156  -2.003  -1.232  H6   3XY  39  
3XY  H7   H7   H  0  1  N  N  N  11.648  12.920  13.526   0.754   0.289  -1.177  H7   3XY  40  
3XY  H8   H8   H  0  1  N  N  N  12.812  13.724  12.420   1.012   0.160   0.580  H8   3XY  41  
3XY  H9   H9   H  0  1  N  N  N  10.840  15.187  12.898   2.314  -1.596  -1.552  H9   3XY  42  
3XY  H10  H10  H  0  1  N  N  N   9.750  13.927  12.225   3.114  -0.287  -0.649  H10  3XY  43  
3XY  H11  H11  H  0  1  N  N  N  11.513  11.689   9.418   0.280  -1.944   1.791  H11  3XY  44  
3XY  H12  H12  H  0  1  N  N  N  12.868  12.793   9.832  -0.483  -3.261   0.867  H12  3XY  45  
3XY  H13  H13  H  0  1  N  N  N  11.186  14.125   8.801   1.905  -3.758   1.349  H13  3XY  46  
3XY  H14  H14  H  0  1  N  N  N   9.888  13.375   9.790   1.617  -3.597  -0.400  H14  3XY  47  
3XY  H16  H16  H  0  1  N  N  N  10.271  16.178   9.334   4.153  -3.303   1.113  H16  3XY  48  
3XY  H17  H17  H  0  1  N  N  N   9.052  15.497  10.464   4.114  -2.979  -0.637  H17  3XY  49  
3XY  H18  H18  H  0  1  N  N  N   8.074  17.148  11.804   5.038  -0.944  -1.531  H18  3XY  50  
3XY  H19  H19  H  0  1  N  N  N   7.139  19.270  13.412   6.826   1.262  -2.345  H19  3XY  51  
3XY  H20  H20  H  0  1  N  N  N  10.763  21.237  13.758   8.253   2.046   1.499  H20  3XY  52  
3XY  H21  H21  H  0  1  N  N  N  12.332  19.553  12.234   6.793   0.065   2.982  H21  3XY  53  
3XY  H22  H22  H  0  1  N  N  N  12.249  17.536  10.800   5.143  -1.721   2.651  H22  3XY  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3XY  CAN  CAL  SING  N  N   1  
3XY  CAN  NBF  SING  N  N   2  
3XY  CAL  CBE  SING  N  N   3  
3XY  CAP  NBF  SING  N  N   4  
3XY  CAP  CAW  SING  N  N   5  
3XY  NBF  CAO  SING  N  N   6  
3XY  FAD  CBG  SING  N  N   7  
3XY  CAW  CAG  DOUB  Y  N   8  
3XY  CAW  CAI  SING  Y  N   9  
3XY  CAG  CAH  SING  Y  N  10  
3XY  CBE  NAT  SING  N  N  11  
3XY  CBE  CAM  SING  N  N  12  
3XY  N1   C2   DOUB  Y  N  13  
3XY  N1   C6   SING  Y  N  14  
3XY  CAI  CBA  DOUB  Y  N  15  
3XY  NAT  C6   SING  N  N  16  
3XY  FAC  CBG  SING  N  N  17  
3XY  C2   N3   SING  Y  N  18  
3XY  C6   C5   DOUB  Y  N  19  
3XY  CAH  CBB  DOUB  Y  N  20  
3XY  CAO  CAM  SING  N  N  21  
3XY  CBG  FAB  SING  N  N  22  
3XY  CBG  CAQ  SING  N  N  23  
3XY  N3   C4   DOUB  Y  N  24  
3XY  C5   C4   SING  Y  N  25  
3XY  C5   CAK  SING  Y  N  26  
3XY  C4   SAV  SING  Y  N  27  
3XY  CBA  CBB  SING  Y  N  28  
3XY  CBA  CAJ  SING  Y  N  29  
3XY  CAK  CAY  DOUB  Y  N  30  
3XY  CBB  NAU  SING  Y  N  31  
3XY  CAY  SAV  SING  Y  N  32  
3XY  CAY  CAQ  SING  N  N  33  
3XY  CAJ  CAX  DOUB  Y  N  34  
3XY  NAU  CAX  SING  Y  N  35  
3XY  CAX  CAE  SING  N  N  36  
3XY  CAE  NAA  TRIP  N  N  37  
3XY  CAQ  H1   SING  N  N  38  
3XY  CAQ  H2   SING  N  N  39  
3XY  CAK  H3   SING  N  N  40  
3XY  C2   H4   SING  N  N  41  
3XY  NAT  H5   SING  N  N  42  
3XY  CBE  H6   SING  N  N  43  
3XY  CAM  H7   SING  N  N  44  
3XY  CAM  H8   SING  N  N  45  
3XY  CAO  H9   SING  N  N  46  
3XY  CAO  H10  SING  N  N  47  
3XY  CAL  H11  SING  N  N  48  
3XY  CAL  H12  SING  N  N  49  
3XY  CAN  H13  SING  N  N  50  
3XY  CAN  H14  SING  N  N  51  
3XY  CAP  H16  SING  N  N  52  
3XY  CAP  H17  SING  N  N  53  
3XY  CAI  H18  SING  N  N  54  
3XY  CAJ  H19  SING  N  N  55  
3XY  NAU  H20  SING  N  N  56  
3XY  CAH  H21  SING  N  N  57  
3XY  CAG  H22  SING  N  N  58  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3XY  SMILES            ACDLabs               12.01  "N#Cc2nc1ccc(cc1c2)CN5CCC(Nc3ncnc4sc(cc34)CC(F)(F)F)CC5"  
3XY  InChI             InChI                 1.03   "InChI=1S/C23H21F3N6S/c24-23(25,26)10-18-9-19-21(28-13-29-22(19)33-18)31-16-3-5-32(6-4-16)12-14-1-2-20-15(7-14)8-17(11-27)30-20/h1-2,7-9,13,16,30H,3-6,10,12H2,(H,28,29,31)"  
3XY  InChIKey          InChI                 1.03   PSOJDGBGVBEYJX-UHFFFAOYSA-N  
3XY  SMILES_CANONICAL  CACTVS                3.385  "FC(F)(F)Cc1sc2ncnc(NC3CCN(CC3)Cc4ccc5[nH]c(cc5c4)C#N)c2c1"  
3XY  SMILES            CACTVS                3.385  "FC(F)(F)Cc1sc2ncnc(NC3CCN(CC3)Cc4ccc5[nH]c(cc5c4)C#N)c2c1"  
3XY  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "c1cc2c(cc1CN3CCC(CC3)Nc4c5cc(sc5ncn4)CC(F)(F)F)cc([nH]2)C#N"  
3XY  SMILES            "OpenEye OEToolkits"  1.9.2  "c1cc2c(cc1CN3CCC(CC3)Nc4c5cc(sc5ncn4)CC(F)(F)F)cc([nH]2)C#N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3XY  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-[(4-{[6-(2,2,2-trifluoroethyl)thieno[2,3-d]pyrimidin-4-yl]amino}piperidin-1-yl)methyl]-1H-indole-2-carbonitrile"  
3XY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "5-[[4-[[6-[2,2,2-tris(fluoranyl)ethyl]thieno[2,3-d]pyrimidin-4-yl]amino]piperidin-1-yl]methyl]-1H-indole-2-carbonitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3XY  "Create component"  2014-12-08  RCSB  
3XY  "Modify synonyms"   2015-01-02  RCSB  
3XY  "Initial release"   2015-04-15  RCSB  
3XY  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3XY
_pdbx_chem_comp_synonyms.name        MI-136
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
