data_HMY
# 
_chem_comp.id                                    HMY 
_chem_comp.name                                  "(1aR,8S,13S,14S,15aR)-5,13,14-trihydroxy-3-methoxy-8-methyl-8,9,13,14,15,15a-hexahydro-6H-oxireno[k][2]benzoxacyclotetradecine-6,12(1aH)-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H22 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Hypothemycin 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-02-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        378.373 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HMY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3C9W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HMY O23  O23  O 0 1 N N N N N N 29.497 8.192 8.734  0.551  0.446  0.962  O23  HMY 1  
HMY C7   C7   C 0 1 N N N N N N 29.372 7.234 7.978  -0.294 1.147  0.450  C7   HMY 2  
HMY O8   O8   O 0 1 N N N N N N 28.066 6.858 7.434  -0.031 2.397  0.048  O8   HMY 3  
HMY C9   C9   C 0 1 N N S N N N 26.976 7.746 7.661  1.301  2.945  0.065  C9   HMY 4  
HMY C25  C25  C 0 1 N N N N N N 27.093 8.895 6.665  1.908  2.892  1.466  C25  HMY 5  
HMY C10  C10  C 0 1 N N N N N N 25.662 7.002 7.434  2.194  2.217  -0.941 C10  HMY 6  
HMY C11  C11  C 0 1 N N N N N N 25.365 5.886 8.436  3.601  2.143  -0.438 C11  HMY 7  
HMY C12  C12  C 0 1 N N N N N N 24.254 4.965 7.932  4.318  1.060  -0.225 C12  HMY 8  
HMY C2   C2   C 0 1 Y N N N N N 30.572 6.395 7.617  -1.648 0.593  0.252  C2   HMY 9  
HMY C1   C1   C 0 1 Y N N N N N 31.782 6.637 8.269  -2.697 1.456  -0.111 C1   HMY 10 
HMY O20  O20  O 0 1 N N N N N N 31.858 7.619 9.200  -2.471 2.781  -0.293 O20  HMY 11 
HMY C6   C6   C 0 1 Y N N N N N 32.918 5.886 7.987  -3.977 0.954  -0.282 C6   HMY 12 
HMY C5   C5   C 0 1 Y N N N N N 32.838 4.882 7.029  -4.215 -0.400 -0.099 C5   HMY 13 
HMY O21  O21  O 0 1 N N N N N N 33.939 4.123 6.735  -5.469 -0.892 -0.257 O21  HMY 14 
HMY C22  C22  C 0 1 N N N N N N 33.841 2.694 6.834  -6.493 0.040  -0.612 C22  HMY 15 
HMY C4   C4   C 0 1 Y N N N N N 31.631 4.635 6.372  -3.171 -1.251 0.241  C4   HMY 16 
HMY C3   C3   C 0 1 Y N N N N N 30.486 5.373 6.665  -1.898 -0.769 0.407  C3   HMY 17 
HMY C18  C18  C 0 1 N N R N N N 29.227 5.090 5.923  -0.813 -1.766 0.746  C18  HMY 18 
HMY O31  O31  O 0 1 N N N N N N 29.338 4.699 4.551  -1.088 -3.091 0.254  O31  HMY 19 
HMY C17  C17  C 0 1 N N R N N N 28.749 3.727 5.411  0.018  -2.397 -0.354 C17  HMY 20 
HMY C16  C16  C 0 1 N N N N N N 27.251 3.446 5.251  1.373  -3.045 -0.078 C16  HMY 21 
HMY C15  C15  C 0 1 N N S N N N 26.711 2.770 6.508  2.410  -2.056 0.428  C15  HMY 22 
HMY O29  O29  O 0 1 N N N N N N 27.134 1.389 6.484  2.026  -1.534 1.700  O29  HMY 23 
HMY C14  C14  C 0 1 N N S N N N 25.185 2.842 6.684  2.612  -0.910 -0.567 C14  HMY 24 
HMY O28  O28  O 0 1 N N N N N N 24.563 2.010 5.695  2.487  -1.413 -1.900 O28  HMY 25 
HMY C13  C13  C 0 1 N N N N N N 24.588 4.232 6.649  3.984  -0.336 -0.386 C13  HMY 26 
HMY O24  O24  O 0 1 N N N N N N 24.315 4.761 5.584  4.917  -1.134 -0.374 O24  HMY 27 
HMY H9   H9   H 0 1 N N N N N N 26.996 8.129 8.692  1.245  4.004  -0.239 H9   HMY 28 
HMY H25  H25  H 0 1 N N N N N N 27.121 9.851 7.209  1.955  1.856  1.803  H25  HMY 29 
HMY H25A H25A H 0 0 N N N N N N 28.017 8.779 6.079  2.912  3.313  1.443  H25A HMY 30 
HMY H25B H25B H 0 0 N N N N N N 26.225 8.884 5.989  1.287  3.469  2.152  H25B HMY 31 
HMY H10  H10  H 0 1 N N N N N N 24.847 7.737 7.503  1.792  1.244  -1.177 H10  HMY 32 
HMY H10A H10A H 0 0 N N N N N N 25.747 6.519 6.450  2.194  2.805  -1.875 H10A HMY 33 
HMY H11  H11  H 0 1 N N N N N N 25.875 5.764 9.380  4.105  3.104  -0.234 H11  HMY 34 
HMY H12  H12  H 0 1 N N N N N N 23.312 4.847 8.446  5.350  1.260  0.138  H12  HMY 35 
HMY HO20 HO20 H 0 0 N N N N N N 31.876 7.233 10.068 -2.231 3.018  -1.199 HO20 HMY 36 
HMY H6   H6   H 0 1 N N N N N N 33.847 6.080 8.504  -4.785 1.615  -0.556 H6   HMY 37 
HMY H22  H22  H 0 1 N N N N N N 33.816 2.257 5.825  -7.444 -0.484 -0.706 H22  HMY 38 
HMY H22A H22A H 0 0 N N N N N N 34.712 2.304 7.381  -6.573 0.803  0.163  H22A HMY 39 
HMY H22B H22B H 0 0 N N N N N N 32.920 2.426 7.372  -6.242 0.512  -1.561 H22B HMY 40 
HMY H4   H4   H 0 1 N N N N N N 31.584 3.858 5.623  -3.361 -2.305 0.382  H4   HMY 41 
HMY H18  H18  H 0 1 N N N N N N 28.745 5.856 6.549  -0.405 -1.692 1.752  H18  HMY 42 
HMY H17  H17  H 0 1 N N N N N N 28.939 2.681 5.693  -0.133 -2.049 -1.381 H17  HMY 43 
HMY H16  H16  H 0 1 N N N N N N 26.718 4.395 5.091  1.237  -3.836 0.670  H16  HMY 44 
HMY H16A H16A H 0 0 N N N N N N 27.098 2.781 4.388  1.736  -3.519 -0.996 H16A HMY 45 
HMY H15  H15  H 0 1 N N N N N N 27.120 3.322 7.367  3.369  -2.579 0.549  H15  HMY 46 
HMY HO29 HO29 H 0 0 N N N N N N 27.227 1.101 5.583  2.653  -0.897 2.070  HO29 HMY 47 
HMY H14  H14  H 0 1 N N N N N N 24.983 2.482 7.704  1.854  -0.158 -0.389 H14  HMY 48 
HMY HO28 HO28 H 0 0 N N N N N N 24.425 2.511 4.900  2.603  -0.742 -2.587 HO28 HMY 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HMY O23 C7   DOUB N N 1  
HMY C7  O8   SING N N 2  
HMY C7  C2   SING N N 3  
HMY O8  C9   SING N N 4  
HMY C9  C25  SING N N 5  
HMY C9  C10  SING N N 6  
HMY C10 C11  SING N N 7  
HMY C11 C12  DOUB N N 8  
HMY C12 C13  SING N N 9  
HMY C2  C1   DOUB Y N 10 
HMY C2  C3   SING Y N 11 
HMY C1  O20  SING N N 12 
HMY C1  C6   SING Y N 13 
HMY C6  C5   DOUB Y Z 14 
HMY C5  O21  SING N N 15 
HMY C5  C4   SING Y N 16 
HMY O21 C22  SING N N 17 
HMY C4  C3   DOUB Y N 18 
HMY C3  C18  SING N N 19 
HMY C18 O31  SING N N 20 
HMY C18 C17  SING N N 21 
HMY O31 C17  SING N N 22 
HMY C17 C16  SING N N 23 
HMY C16 C15  SING N N 24 
HMY C15 O29  SING N N 25 
HMY C15 C14  SING N N 26 
HMY C14 O28  SING N N 27 
HMY C14 C13  SING N N 28 
HMY C13 O24  DOUB N N 29 
HMY C9  H9   SING N N 30 
HMY C25 H25  SING N N 31 
HMY C25 H25A SING N N 32 
HMY C25 H25B SING N N 33 
HMY C10 H10  SING N N 34 
HMY C10 H10A SING N N 35 
HMY C11 H11  SING N N 36 
HMY C12 H12  SING N N 37 
HMY O20 HO20 SING N N 38 
HMY C6  H6   SING N N 39 
HMY C22 H22  SING N N 40 
HMY C22 H22A SING N N 41 
HMY C22 H22B SING N N 42 
HMY C4  H4   SING N N 43 
HMY C18 H18  SING N N 44 
HMY C17 H17  SING N N 45 
HMY C16 H16  SING N N 46 
HMY C16 H16A SING N N 47 
HMY C15 H15  SING N N 48 
HMY O29 HO29 SING N N 49 
HMY C14 H14  SING N N 50 
HMY O28 HO28 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HMY SMILES           ACDLabs              10.04 "O=C3C=CCC(OC(=O)c1c(cc(OC)cc1O)C2OC2CC(O)C3O)C"                                                                                                                       
HMY SMILES_CANONICAL CACTVS               3.341 "COc1cc(O)c2C(=O)O[C@@H](C)C\C=C/C(=O)[C@@H](O)[C@@H](O)C[C@H]3O[C@@H]3c2c1"                                                                                           
HMY SMILES           CACTVS               3.341 "COc1cc(O)c2C(=O)O[CH](C)CC=CC(=O)[CH](O)[CH](O)C[CH]3O[CH]3c2c1"                                                                                                      
HMY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1CC=CC(=O)[C@H]([C@H](C[C@@H]2[C@H](O2)c3cc(cc(c3C(=O)O1)O)OC)O)O"                                                                                              
HMY SMILES           "OpenEye OEToolkits" 1.5.0 "CC1CC=CC(=O)C(C(CC2C(O2)c3cc(cc(c3C(=O)O1)O)OC)O)O"                                                                                                                   
HMY InChI            InChI                1.03  "InChI=1S/C19H22O8/c1-9-4-3-5-12(20)17(23)14(22)8-15-18(27-15)11-6-10(25-2)7-13(21)16(11)19(24)26-9/h3,5-7,9,14-15,17-18,21-23H,4,8H2,1-2H3/t9-,14-,15+,17+,18+/m0/s1" 
HMY InChIKey         InChI                1.03  SSNQAUBBJYCSMY-LWQPPDATSA-N                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           HMY 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   10.04 
_pdbx_chem_comp_identifier.identifier        "(1aR,8S,10Z,13S,14S,15aR)-5,13,14-trihydroxy-3-methoxy-8-methyl-8,9,13,14,15,15a-hexahydro-6H-oxireno[k][2]benzoxacyclotetradecine-6,12(1aH)-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HMY "Create component"     2008-02-19 PDBJ 
HMY "Modify aromatic_flag" 2011-06-04 RCSB 
HMY "Modify descriptor"    2011-06-04 RCSB 
HMY "Modify synonyms"      2021-03-01 PDBE 
HMY "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      HMY 
_pdbx_chem_comp_synonyms.name         Hypothemycin 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            HMY 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C11 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
