data_PKY
# 
_chem_comp.id                                    PKY 
_chem_comp.name                                  "[4-(3-aminocarbonylphenyl)-1,2,3-triazol-1-yl]methyl-phosphonooxy-borinic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H12 B N4 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-08-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        326.010 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PKY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6TZG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PKY O7  O1  O 0 1 N N N N N N 22.538 -5.839  -33.111 -5.924 1.674  -1.221 O7  PKY 1  
PKY C2  C1  C 0 1 N N N N N N 22.484 -5.034  -34.032 -6.069 0.501  -0.936 C2  PKY 2  
PKY N8  N1  N 0 1 N N N N N N 22.359 -3.655  -33.698 -7.243 -0.112 -1.184 N8  PKY 3  
PKY C12 C2  C 0 1 Y N N N N N 22.506 -5.539  -35.465 -4.955 -0.254 -0.323 C12 PKY 4  
PKY C11 C3  C 0 1 Y N N N N N 23.105 -6.773  -35.772 -3.739 0.379  -0.066 C11 PKY 5  
PKY C13 C4  C 0 1 Y N N N N N 21.887 -4.834  -36.501 -5.119 -1.600 0.006  C13 PKY 6  
PKY C14 C5  C 0 1 Y N N N N N 21.889 -5.325  -37.816 -4.079 -2.305 0.578  C14 PKY 7  
PKY C15 C6  C 0 1 Y N N N N N 22.496 -6.541  -38.129 -2.872 -1.684 0.830  C15 PKY 8  
PKY C10 C7  C 0 1 Y N N N N N 23.105 -7.271  -37.097 -2.697 -0.338 0.511  C10 PKY 9  
PKY C8  C8  C 0 1 Y N N N N N 23.759 -8.586  -37.383 -1.398 0.328  0.783  C8  PKY 10 
PKY N7  N2  N 0 1 Y N N N N N 24.062 -9.477  -36.401 -1.109 1.631  0.620  N7  PKY 11 
PKY N6  N3  N 0 1 Y N N N N N 24.664 -10.592 -36.996 0.116  1.829  0.959  N6  PKY 12 
PKY C9  C9  C 0 1 Y N N N N N 24.142 -9.120  -38.624 -0.259 -0.259 1.254  C9  PKY 13 
PKY N5  N4  N 0 1 Y N N N N N 24.688 -10.316 -38.357 0.661  0.728  1.340  N5  PKY 14 
PKY C1  C10 C 0 1 N N N N N N 25.274 -11.400 -39.131 2.043  0.572  1.800  C1  PKY 15 
PKY B1  B1  B 0 1 N N N N N N 26.802 -11.088 -39.511 2.967  0.236  0.576  B1  PKY 16 
PKY O2  O2  O 0 1 N N N N N N 27.073 -9.567  -39.459 2.410  0.131  -0.726 O2  PKY 17 
PKY O4  O3  O 0 1 N N N N N N 27.044 -11.724 -40.783 4.360  0.038  0.770  O4  PKY 18 
PKY P1  P1  P 0 1 N N N N N N 26.606 -11.169 -42.217 5.169  -0.298 -0.581 P1  PKY 19 
PKY O6  O4  O 0 1 N N N N N N 27.730 -10.433 -42.920 6.728  -0.501 -0.236 O6  PKY 20 
PKY O3  O5  O 0 1 N N N N N N 26.238 -12.381 -43.049 4.631  -1.539 -1.182 O3  PKY 21 
PKY O5  O6  O 0 1 N N N N N N 25.419 -10.235 -42.070 5.003  0.919  -1.622 O5  PKY 22 
PKY H1  H1  H 0 1 N N N N N N 22.318 -3.375  -32.739 -7.972 0.382  -1.589 H1  PKY 23 
PKY H2  H2  H 0 1 N N N N N N 22.312 -2.967  -34.423 -7.358 -1.048 -0.956 H2  PKY 24 
PKY H3  H3  H 0 1 N N N N N N 23.571 -7.349  -34.986 -3.608 1.422  -0.314 H3  PKY 25 
PKY H4  H4  H 0 1 N N N N N N 21.399 -3.895  -36.286 -6.061 -2.092 -0.189 H4  PKY 26 
PKY H5  H5  H 0 1 N N N N N N 21.413 -4.752  -38.598 -4.211 -3.347 0.831  H5  PKY 27 
PKY H6  H6  H 0 1 N N N N N N 22.497 -6.912  -39.143 -2.063 -2.240 1.279  H6  PKY 28 
PKY H7  H7  H 0 1 N N N N N N 24.022 -8.662  -39.595 -0.119 -1.301 1.500  H7  PKY 29 
PKY H8  H8  H 0 1 N N N N N N 24.695 -11.533 -40.057 2.379  1.498  2.265  H8  PKY 30 
PKY H9  H9  H 0 1 N N N N N N 25.234 -12.326 -38.538 2.095  -0.239 2.527  H9  PKY 31 
PKY H10 H10 H 0 1 N N N N N N 26.886 -9.241  -38.586 3.056  -0.079 -1.415 H10 PKY 32 
PKY H11 H11 H 0 1 N N N N N N 27.955 -10.890 -43.722 7.277  -0.707 -1.005 H11 PKY 33 
PKY H12 H12 H 0 1 N N N N N N 24.672 -10.596 -42.532 5.335  1.765  -1.293 H12 PKY 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PKY O3  P1  DOUB N N 1  
PKY O6  P1  SING N N 2  
PKY P1  O5  SING N N 3  
PKY P1  O4  SING N N 4  
PKY O4  B1  SING N N 5  
PKY B1  O2  SING N N 6  
PKY B1  C1  SING N N 7  
PKY C1  N5  SING N N 8  
PKY C9  N5  SING Y N 9  
PKY C9  C8  DOUB Y N 10 
PKY N5  N6  SING Y N 11 
PKY C15 C14 DOUB Y N 12 
PKY C15 C10 SING Y N 13 
PKY C14 C13 SING Y N 14 
PKY C8  C10 SING N N 15 
PKY C8  N7  SING Y N 16 
PKY C10 C11 DOUB Y N 17 
PKY N6  N7  DOUB Y N 18 
PKY C13 C12 DOUB Y N 19 
PKY C11 C12 SING Y N 20 
PKY C12 C2  SING N N 21 
PKY C2  N8  SING N N 22 
PKY C2  O7  DOUB N N 23 
PKY N8  H1  SING N N 24 
PKY N8  H2  SING N N 25 
PKY C11 H3  SING N N 26 
PKY C13 H4  SING N N 27 
PKY C14 H5  SING N N 28 
PKY C15 H6  SING N N 29 
PKY C9  H7  SING N N 30 
PKY C1  H8  SING N N 31 
PKY C1  H9  SING N N 32 
PKY O2  H10 SING N N 33 
PKY O6  H11 SING N N 34 
PKY O5  H12 SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PKY InChI            InChI                1.03  "InChI=1S/C10H12BN4O6P/c12-10(16)8-3-1-2-7(4-8)9-5-15(14-13-9)6-11(17)21-22(18,19)20/h1-5,17H,6H2,(H2,12,16)(H2,18,19,20)" 
PKY InChIKey         InChI                1.03  FKHVACRDBKDASW-UHFFFAOYSA-N                                                                                                
PKY SMILES_CANONICAL CACTVS               3.385 "NC(=O)c1cccc(c1)c2cn(CB(O)O[P](O)(O)=O)nn2"                                                                               
PKY SMILES           CACTVS               3.385 "NC(=O)c1cccc(c1)c2cn(CB(O)O[P](O)(O)=O)nn2"                                                                               
PKY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B(Cn1cc(nn1)c2cccc(c2)C(=O)N)(O)OP(=O)(O)O"                                                                               
PKY SMILES           "OpenEye OEToolkits" 2.0.7 "B(Cn1cc(nn1)c2cccc(c2)C(=O)N)(O)OP(=O)(O)O"                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           PKY 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[4-(3-aminocarbonylphenyl)-1,2,3-triazol-1-yl]methyl-phosphonooxy-borinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PKY "Create component" 2019-08-16 RCSB 
PKY "Initial release"  2020-06-24 RCSB 
PKY "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            PKY 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
