data_XMY
# 
_chem_comp.id                                    XMY 
_chem_comp.name                                  "(5S)-4-({1-[(4-bromophenyl)methyl]-1H-imidazol-5-yl}methyl)-5-butyl-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H28 Br F3 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-12-21 
_chem_comp.pdbx_modified_date                    2022-10-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        565.425 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XMY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7L45 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XMY C10  C1  C  0 1 N N N -17.375 67.660 -0.267 1.138  2.738  -1.121 C10  XMY 1  
XMY C13  C2  C  0 1 Y N N -15.564 66.916 -3.230 -1.699 1.895  -1.628 C13  XMY 2  
XMY C20  C3  C  0 1 Y N N -13.622 68.073 0.481  -4.547 -1.222 -2.112 C20  XMY 3  
XMY C21  C4  C  0 1 Y N N -13.808 69.180 1.273  -5.500 -1.755 -1.264 C21  XMY 4  
XMY C22  C5  C  0 1 Y N N -14.117 70.366 0.704  -5.177 -2.031 0.052  C22  XMY 5  
XMY C24  C6  C  0 1 Y N N -14.246 70.477 -0.684 -3.900 -1.774 0.519  C24  XMY 6  
XMY C26  C7  C  0 1 Y N N -18.177 71.541 0.131  3.210  -0.152 0.108  C26  XMY 7  
XMY C28  C8  C  0 1 Y N N -17.556 73.860 0.324  5.523  -0.788 0.198  C28  XMY 8  
XMY C01  C9  C  0 1 N N N -22.686 68.927 -3.998 -2.698 5.281  3.463  C01  XMY 9  
XMY C02  C10 C  0 1 N N N -21.680 68.554 -2.881 -2.069 3.887  3.443  C02  XMY 10 
XMY C03  C11 C  0 1 N N N -20.237 68.792 -3.271 -1.058 3.800  2.298  C03  XMY 11 
XMY C04  C12 C  0 1 N N N -19.260 67.978 -2.359 -0.429 2.406  2.278  C04  XMY 12 
XMY C05  C13 C  0 1 N N S -17.772 68.599 -2.330 0.670  2.357  1.214  C05  XMY 13 
XMY C06  C14 C  0 1 N N N -17.895 70.001 -1.860 1.344  0.984  1.235  C06  XMY 14 
XMY C08  C15 C  0 1 N N N -17.667 69.046 0.462  2.134  1.619  -1.005 C08  XMY 15 
XMY C12  C16 C  0 1 N N N -16.643 66.696 -2.097 -0.822 1.471  -0.478 C12  XMY 16 
XMY C14  C17 C  0 1 Y N N -15.804 67.083 -4.566 -2.028 3.157  -1.964 C14  XMY 17 
XMY C16  C18 C  0 1 Y N N -13.653 67.206 -4.244 -2.989 1.860  -3.395 C16  XMY 18 
XMY C18  C19 C  0 1 N N N -13.527 66.871 -1.739 -2.232 -0.391 -2.572 C18  XMY 19 
XMY C19  C20 C  0 1 Y N N -13.743 68.158 -0.888 -3.270 -0.971 -1.647 C19  XMY 20 
XMY C25  C21 C  0 1 Y N N -14.054 69.366 -1.471 -2.948 -1.242 -0.330 C25  XMY 21 
XMY C27  C22 C  0 1 Y N N -17.284 72.611 -0.154 4.551  0.200  0.164  C27  XMY 22 
XMY C29  C23 C  0 1 Y N N -18.685 74.089 1.086  5.154  -2.125 0.176  C29  XMY 23 
XMY C30  C24 C  0 1 Y N N -19.555 73.031 1.349  3.818  -2.474 0.121  C30  XMY 24 
XMY C31  C25 C  0 1 Y N N -19.283 71.762 0.857  2.846  -1.493 0.087  C31  XMY 25 
XMY C33  C26 C  0 1 N N N -15.953 75.018 -1.114 7.785  -1.515 0.284  C33  XMY 26 
XMY F34  F1  F  0 1 N N N -15.176 76.135 -1.106 7.646  -2.296 -0.869 F34  XMY 27 
XMY F35  F2  F  0 1 N N N -15.145 73.909 -1.211 7.556  -2.307 1.414  F35  XMY 28 
XMY F36  F3  F  0 1 N N N -16.854 75.081 -2.130 9.080  -0.989 0.338  F36  XMY 29 
XMY N07  N1  N  0 1 N N N -17.911 70.198 -0.405 2.226  0.842  0.079  N07  XMY 30 
XMY N11  N2  N  0 1 N N N -16.921 67.827 -1.540 0.079  2.573  -0.116 N11  XMY 31 
XMY N15  N3  N  0 1 Y N N -14.623 67.255 -5.178 -2.817 3.106  -3.047 N15  XMY 32 
XMY N17  N4  N  0 1 Y N N -14.236 66.995 -3.049 -2.309 1.072  -2.536 N17  XMY 33 
XMY O09  O1  O  0 1 N N N -17.652 69.150 1.599  2.887  1.412  -1.933 O09  XMY 34 
XMY O32  O2  O  0 1 N N N -16.677 74.987 0.104  6.838  -0.446 0.252  O32  XMY 35 
XMY BR23 BR1 BR 0 0 N N N -14.367 71.884 1.888  -6.480 -2.759 1.213  BR23 XMY 36 
XMY H1   H1  H  0 1 N N N -18.306 67.075 -0.298 1.643  3.691  -0.961 H1   XMY 37 
XMY H2   H2  H  0 1 N N N -16.616 67.111 0.309  0.695  2.726  -2.117 H2   XMY 38 
XMY H3   H3  H  0 1 N N N -13.378 67.125 0.937  -4.799 -1.007 -3.140 H3   XMY 39 
XMY H4   H4  H  0 1 N N N -13.708 69.103 2.346  -6.497 -1.955 -1.629 H4   XMY 40 
XMY H5   H5  H  0 1 N N N -14.494 71.427 -1.134 -3.648 -1.989 1.547  H5   XMY 41 
XMY H6   H6  H  0 1 N N N -23.711 68.730 -3.650 -1.919 6.029  3.609  H6   XMY 42 
XMY H7   H7  H  0 1 N N N -22.581 69.994 -4.245 -3.205 5.465  2.516  H7   XMY 43 
XMY H8   H8  H  0 1 N N N -22.481 68.322 -4.893 -3.419 5.343  4.279  H8   XMY 44 
XMY H9   H9  H  0 1 N N N -21.906 69.160 -1.991 -1.562 3.703  4.390  H9   XMY 45 
XMY H10  H10 H  0 1 N N N -21.805 67.488 -2.640 -2.848 3.139  3.297  H10  XMY 46 
XMY H11  H11 H  0 1 N N N -20.093 68.483 -4.317 -1.565 3.984  1.351  H11  XMY 47 
XMY H12  H12 H  0 1 N N N -20.011 69.864 -3.171 -0.279 4.548  2.444  H12  XMY 48 
XMY H13  H13 H  0 1 N N N -19.659 67.972 -1.334 0.002  2.187  3.255  H13  XMY 49 
XMY H14  H14 H  0 1 N N N -19.203 66.946 -2.737 -1.194 1.665  2.044  H14  XMY 50 
XMY H15  H15 H  0 1 N N N -17.408 68.609 -3.368 1.410  3.131  1.418  H15  XMY 51 
XMY H16  H16 H  0 1 N N N -17.044 70.567 -2.266 1.927  0.881  2.150  H16  XMY 52 
XMY H17  H17 H  0 1 N N N -18.833 70.409 -2.264 0.581  0.206  1.205  H17  XMY 53 
XMY H18  H18 H  0 1 N N N -17.556 66.271 -2.539 -1.446 1.216  0.379  H18  XMY 54 
XMY H19  H19 H  0 1 N N N -16.244 66.003 -1.341 -0.234 0.602  -0.771 H19  XMY 55 
XMY H20  H20 H  0 1 N N N -16.773 67.077 -5.044 -1.712 4.053  -1.451 H20  XMY 56 
XMY H21  H21 H  0 1 N N N -12.594 67.317 -4.423 -3.579 1.516  -4.233 H21  XMY 57 
XMY H22  H22 H  0 1 N N N -13.923 66.003 -1.192 -1.240 -0.711 -2.251 H22  XMY 58 
XMY H23  H23 H  0 1 N N N -12.451 66.731 -1.920 -2.415 -0.739 -3.588 H23  XMY 59 
XMY H24  H24 H  0 1 N N N -14.147 69.441 -2.544 -1.953 -1.036 0.036  H24  XMY 60 
XMY H25  H25 H  0 1 N N N -16.397 72.436 -0.745 4.837  1.241  0.180  H25  XMY 61 
XMY H26  H26 H  0 1 N N N -18.892 75.076 1.474  5.911  -2.894 0.203  H26  XMY 62 
XMY H27  H27 H  0 1 N N N -20.444 73.200 1.938  3.533  -3.515 0.105  H27  XMY 63 
XMY H28  H28 H  0 1 N N N -19.965 70.949 1.060  1.803  -1.768 0.045  H28  XMY 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XMY N15 C14  SING Y N 1  
XMY N15 C16  DOUB Y N 2  
XMY C14 C13  DOUB Y N 3  
XMY C16 N17  SING Y N 4  
XMY C01 C02  SING N N 5  
XMY C03 C02  SING N N 6  
XMY C03 C04  SING N N 7  
XMY C13 N17  SING Y N 8  
XMY C13 C12  SING N N 9  
XMY N17 C18  SING N N 10 
XMY C04 C05  SING N N 11 
XMY C05 C06  SING N N 12 
XMY C05 N11  SING N N 13 
XMY F36 C33  SING N N 14 
XMY C12 N11  SING N N 15 
XMY C06 N07  SING N N 16 
XMY C18 C19  SING N N 17 
XMY N11 C10  SING N N 18 
XMY C25 C19  DOUB Y N 19 
XMY C25 C24  SING Y N 20 
XMY F35 C33  SING N N 21 
XMY C33 F34  SING N N 22 
XMY C33 O32  SING N N 23 
XMY C19 C20  SING Y N 24 
XMY C24 C22  DOUB Y N 25 
XMY N07 C26  SING N N 26 
XMY N07 C08  SING N N 27 
XMY C10 C08  SING N N 28 
XMY C27 C26  DOUB Y N 29 
XMY C27 C28  SING Y N 30 
XMY O32 C28  SING N N 31 
XMY C26 C31  SING Y N 32 
XMY C28 C29  DOUB Y N 33 
XMY C08 O09  DOUB N N 34 
XMY C20 C21  DOUB Y N 35 
XMY C22 C21  SING Y N 36 
XMY C22 BR23 SING N N 37 
XMY C31 C30  DOUB Y N 38 
XMY C29 C30  SING Y N 39 
XMY C10 H1   SING N N 40 
XMY C10 H2   SING N N 41 
XMY C20 H3   SING N N 42 
XMY C21 H4   SING N N 43 
XMY C24 H5   SING N N 44 
XMY C01 H6   SING N N 45 
XMY C01 H7   SING N N 46 
XMY C01 H8   SING N N 47 
XMY C02 H9   SING N N 48 
XMY C02 H10  SING N N 49 
XMY C03 H11  SING N N 50 
XMY C03 H12  SING N N 51 
XMY C04 H13  SING N N 52 
XMY C04 H14  SING N N 53 
XMY C05 H15  SING N N 54 
XMY C06 H16  SING N N 55 
XMY C06 H17  SING N N 56 
XMY C12 H18  SING N N 57 
XMY C12 H19  SING N N 58 
XMY C14 H20  SING N N 59 
XMY C16 H21  SING N N 60 
XMY C18 H22  SING N N 61 
XMY C18 H23  SING N N 62 
XMY C25 H24  SING N N 63 
XMY C27 H25  SING N N 64 
XMY C29 H26  SING N N 65 
XMY C30 H27  SING N N 66 
XMY C31 H28  SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XMY SMILES           ACDLabs              12.01 "C2C(=O)N(c1cccc(c1)OC(F)(F)F)CC(CCCC)N2Cc3n(cnc3)Cc4ccc(Br)cc4"                                                                                                                      
XMY InChI            InChI                1.03  "InChI=1S/C26H28BrF3N4O2/c1-2-3-5-22-16-34(21-6-4-7-24(12-21)36-26(28,29)30)25(35)17-32(22)15-23-13-31-18-33(23)14-19-8-10-20(27)11-9-19/h4,6-13,18,22H,2-3,5,14-17H2,1H3/t22-/m0/s1" 
XMY InChIKey         InChI                1.03  GQAHQWQDBPUSHR-QFIPXVFZSA-N                                                                                                                                                           
XMY SMILES_CANONICAL CACTVS               3.385 "CCCC[C@H]1CN(C(=O)CN1Cc2cncn2Cc3ccc(Br)cc3)c4cccc(OC(F)(F)F)c4"                                                                                                                      
XMY SMILES           CACTVS               3.385 "CCCC[CH]1CN(C(=O)CN1Cc2cncn2Cc3ccc(Br)cc3)c4cccc(OC(F)(F)F)c4"                                                                                                                       
XMY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@H]1CN(C(=O)CN1Cc2cncn2Cc3ccc(cc3)Br)c4cccc(c4)OC(F)(F)F"                                                                                                                      
XMY SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCC1CN(C(=O)CN1Cc2cncn2Cc3ccc(cc3)Br)c4cccc(c4)OC(F)(F)F"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XMY "SYSTEMATIC NAME" ACDLabs              12.01 "(5S)-4-({1-[(4-bromophenyl)methyl]-1H-imidazol-5-yl}methyl)-5-butyl-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one"  
XMY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{S})-4-[[3-[(4-bromophenyl)methyl]imidazol-4-yl]methyl]-5-butyl-1-[3-(trifluoromethyloxy)phenyl]piperazin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XMY "Create component" 2020-12-21 RCSB 
XMY "Initial release"  2022-10-26 RCSB 
# 
