data_XOY
#

_chem_comp.id                                   XOY
_chem_comp.name                                 "(R)-3-(Benzylthio)-2-(3-(2-((4'-chloro-[1,1'-biphenyl]-2-yl)methyl)-1,2,3,4-tetrahydroisoquinoline-6-carbonyl)-3-(4-methylbenzyl)ureido)propanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C42 H40 Cl N3 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-01-24
_chem_comp.pdbx_modified_date                   2021-04-30
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       718.303
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XOY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6C82
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XOY  C1   C1   C   0  1  Y  N  N   3.282  -28.438    2.410  -7.610   0.053   0.248  C1   XOY   1  
XOY  C10  C2   C   0  1  Y  N  N   5.028  -33.197    1.760  -6.182   4.838   1.265  C10  XOY   2  
XOY  C11  C3   C   0  1  Y  N  N   3.730  -32.908    2.159  -6.096   4.202   0.040  C11  XOY   3  
XOY  C12  C4   C   0  1  Y  N  N   3.202  -31.625    2.022  -6.233   2.831  -0.040  C12  XOY   4  
XOY  C13  C5   C   0  1  N  N  N   1.762  -31.381    2.452  -6.138   2.139  -1.376  C13  XOY   5  
XOY  C14  C6   C   0  1  N  N  N  -0.558  -31.877    1.882  -4.871   0.434  -2.550  C14  XOY   6  
XOY  C15  C7   C   0  1  N  N  N  -1.476  -32.789    1.066  -3.673  -0.498  -2.371  C15  XOY   7  
XOY  C16  C8   C   0  1  Y  N  N  -1.163  -32.688   -0.415  -2.411   0.310  -2.206  C16  XOY   8  
XOY  C17  C9   C   0  1  Y  N  N   0.058  -32.193   -0.832  -2.448   1.652  -1.885  C17  XOY   9  
XOY  C18  C10  C   0  1  N  N  N   1.116  -31.721    0.145  -3.750   2.386  -1.690  C18  XOY  10  
XOY  C19  C11  C   0  1  Y  N  N   0.326  -32.114   -2.193  -1.264   2.362  -1.737  C19  XOY  11  
XOY  C2   C12  C   0  1  Y  N  N   2.875  -27.122    2.270  -7.743  -1.319   0.176  C2   XOY  12  
XOY  C20  C13  C   0  1  Y  N  N  -0.604  -32.526   -3.147  -0.047   1.740  -1.909  C20  XOY  13  
XOY  C21  C14  C   0  1  Y  N  N  -1.841  -32.992   -2.746  -0.004   0.384  -2.236  C21  XOY  14  
XOY  C22  C15  C   0  1  Y  N  N  -2.091  -33.113   -1.369  -1.195  -0.326  -2.382  C22  XOY  15  
XOY  C23  C16  C   0  1  N  N  N  -2.876  -33.513   -3.716   1.295  -0.295  -2.426  C23  XOY  16  
XOY  C24  C17  C   0  1  N  N  N  -4.728  -32.039   -2.953   1.835   0.200  -0.102  C24  XOY  17  
XOY  C25  C18  C   0  1  Y  N  N  -5.087  -30.902   -3.919   1.106  -0.776   0.786  C25  XOY  18  
XOY  C26  C19  C   0  1  Y  N  N  -4.168  -30.416   -4.856  -0.260  -0.943   0.655  C26  XOY  19  
XOY  C27  C20  C   0  1  Y  N  N  -4.511  -29.376   -5.726  -0.928  -1.842   1.466  C27  XOY  20  
XOY  C28  C21  C   0  1  Y  N  N  -5.783  -28.808   -5.658  -0.229  -2.573   2.408  C28  XOY  21  
XOY  C29  C22  C   0  1  N  N  N  -6.170  -27.679   -6.578  -0.957  -3.553   3.292  C29  XOY  22  
XOY  C3   C23  C   0  1  Y  N  N   2.755  -26.586    0.990  -6.886  -2.138   0.891  C3   XOY  23  
XOY  C30  C24  C   0  1  Y  N  N  -6.703  -29.284   -4.727   1.137  -2.407   2.539  C30  XOY  24  
XOY  C31  C25  C   0  1  Y  N  N  -6.353  -30.322   -3.864   1.804  -1.508   1.729  C31  XOY  25  
XOY  C32  C26  C   0  1  N  N  N  -4.961  -33.757   -4.583   3.260  -1.174  -1.523  C32  XOY  26  
XOY  C33  C27  C   0  1  N  N  R  -5.391  -35.339   -6.376   5.323  -2.116  -0.632  C33  XOY  27  
XOY  C34  C28  C   0  1  N  N  N  -6.036  -36.460   -5.612   5.006  -3.569  -0.391  C34  XOY  28  
XOY  C35  C29  C   0  1  N  N  N  -4.626  -35.937   -7.553   6.367  -1.646   0.383  C35  XOY  29  
XOY  C36  C30  C   0  1  N  N  N  -5.689  -33.825   -8.934   7.983   0.469   1.372  C36  XOY  30  
XOY  C37  C31  C   0  1  Y  N  N  -5.560  -32.535   -9.732   8.408   1.910   1.262  C37  XOY  31  
XOY  C38  C32  C   0  1  Y  N  N  -5.753  -32.542  -11.108   9.474   2.257   0.453  C38  XOY  32  
XOY  C39  C33  C   0  1  Y  N  N  -5.645  -31.367  -11.852   9.861   3.579   0.348  C39  XOY  33  
XOY  C4   C34  C   0  1  Y  N  N   3.028  -27.357   -0.140  -5.891  -1.586   1.680  C4   XOY  34  
XOY  C40  C35  C   0  1  Y  N  N  -5.345  -30.171  -11.213   9.182   4.556   1.051  C40  XOY  35  
XOY  C41  C36  C   0  1  Y  N  N  -5.161  -30.157   -9.831   8.115   4.210   1.860  C41  XOY  36  
XOY  C42  C37  C   0  1  Y  N  N  -5.268  -31.334   -9.093   7.729   2.887   1.965  C42  XOY  37  
XOY  C5   C38  C   0  1  Y  N  N   3.431  -28.682    0.006  -5.750  -0.215   1.758  C5   XOY  38  
XOY  C6   C39  C   0  1  Y  N  N   3.547  -29.221    1.290  -6.607   0.613   1.036  C6   XOY  39  
XOY  C7   C40  C   0  1  Y  N  N   3.999  -30.625    1.473  -6.459   2.088   1.116  C7   XOY  40  
XOY  C8   C41  C   0  1  Y  N  N   5.304  -30.911    1.073  -6.545   2.733   2.348  C8   XOY  41  
XOY  C9   C42  C   0  1  Y  N  N   5.821  -32.194    1.210  -6.400   4.104   2.417  C9   XOY  42  
XOY  N1   N1   N   0  1  N  N  N   0.859  -32.128    1.540  -4.851   1.438  -1.474  N1   XOY  43  
XOY  N2   N2   N   0  1  N  N  N  -4.151  -33.104   -3.747   2.138  -0.440  -1.384  N2   XOY  44  
XOY  N3   N3   N   0  1  N  N  N  -4.496  -34.585   -5.517   4.103  -1.318  -0.481  N3   XOY  45  
XOY  O1   O1   O   0  1  N  N  N  -2.511  -34.406   -4.471   1.602  -0.723  -3.521  O1   XOY  46  
XOY  O2   O2   O   0  1  N  N  N  -6.162  -33.670   -4.381   3.512  -1.704  -2.587  O2   XOY  47  
XOY  O3   O3   O   0  1  N  N  N  -5.360  -37.068   -4.753   5.978  -4.491  -0.476  O3   XOY  48  
XOY  O4   O4   O   0  1  N  N  N  -7.226  -36.748   -5.858   3.877  -3.905  -0.122  O4   XOY  49  
XOY  S1   S1   S   0  1  N  N  N  -4.147  -34.665   -8.681   6.749   0.103   0.094  S1   XOY  50  
XOY  CL3  CL1  CL  0  0  N  N  N   2.238  -24.885    0.804  -7.060  -3.862   0.798  CL3  XOY  51  
XOY  H1   H1   H   0  1  N  N  N   3.395  -28.861    3.397  -8.279   0.691  -0.310  H1   XOY  52  
XOY  H2   H2   H   0  1  N  N  N   5.421  -34.196    1.876  -6.074   5.911   1.323  H2   XOY  53  
XOY  H3   H3   H   0  1  N  N  N   3.119  -33.691    2.583  -5.921   4.780  -0.856  H3   XOY  54  
XOY  H4   H4   H   0  1  N  N  N   1.537  -30.306    2.397  -6.952   1.421  -1.472  H4   XOY  55  
XOY  H5   H5   H   0  1  N  N  N   1.619  -31.733    3.484  -6.211   2.879  -2.174  H5   XOY  56  
XOY  H6   H6   H   0  1  N  N  N  -0.803  -30.827    1.663  -4.807   0.932  -3.517  H6   XOY  57  
XOY  H7   H7   H   0  1  N  N  N  -0.712  -32.073    2.953  -5.795  -0.142  -2.496  H7   XOY  58  
XOY  H8   H8   H   0  1  N  N  N  -2.521  -32.491    1.234  -3.825  -1.117  -1.487  H8   XOY  59  
XOY  H9   H9   H   0  1  N  N  N  -1.334  -33.829    1.394  -3.579  -1.138  -3.249  H9   XOY  60  
XOY  H10  H10  H   0  1  N  N  N   2.086  -32.137   -0.165  -3.666   3.043  -0.825  H10  XOY  61  
XOY  H11  H11  H   0  1  N  N  N   1.159  -30.623    0.106  -3.961   2.985  -2.576  H11  XOY  62  
XOY  H12  H12  H   0  1  N  N  N   1.278  -31.724   -2.520  -1.297   3.412  -1.484  H12  XOY  63  
XOY  H13  H13  H   0  1  N  N  N   2.654  -26.521    3.139  -8.518  -1.754  -0.438  H13  XOY  64  
XOY  H14  H14  H   0  1  N  N  N  -0.358  -32.481   -4.198   0.869   2.299  -1.791  H14  XOY  65  
XOY  H15  H15  H   0  1  N  N  N  -3.024  -33.545   -1.039  -1.169  -1.376  -2.635  H15  XOY  66  
XOY  H16  H16  H   0  1  N  N  N  -3.999  -31.686   -2.208   1.207   1.075  -0.271  H16  XOY  67  
XOY  H17  H17  H   0  1  N  N  N  -5.632  -32.398   -2.440   2.763   0.506   0.380  H17  XOY  68  
XOY  H18  H18  H   0  1  N  N  N  -3.180  -30.850   -4.908  -0.806  -0.371  -0.081  H18  XOY  69  
XOY  H19  H19  H   0  1  N  N  N  -3.794  -29.014   -6.448  -1.995  -1.972   1.363  H19  XOY  70  
XOY  H20  H20  H   0  1  N  N  N  -6.610  -28.090   -7.498  -0.975  -4.531   2.812  H20  XOY  71  
XOY  H21  H21  H   0  1  N  N  N  -6.906  -27.033   -6.076  -0.444  -3.628   4.251  H21  XOY  72  
XOY  H22  H22  H   0  1  N  N  N  -5.276  -27.089   -6.831  -1.979  -3.208   3.453  H22  XOY  73  
XOY  H23  H23  H   0  1  N  N  N  -7.690  -28.848   -4.673   1.682  -2.979   3.275  H23  XOY  74  
XOY  H24  H24  H   0  1  N  N  N  -7.073  -30.681   -3.143   2.872  -1.380   1.828  H24  XOY  75  
XOY  H25  H25  H   0  1  N  N  N  -6.176  -34.675   -6.767   5.716  -1.992  -1.641  H25  XOY  76  
XOY  H26  H26  H   0  1  N  N  N  -5.270  -36.661   -8.074   5.975  -1.770   1.392  H26  XOY  77  
XOY  H27  H27  H   0  1  N  N  N  -3.727  -36.448   -7.179   7.275  -2.240   0.271  H27  XOY  78  
XOY  H28  H28  H   0  1  N  N  N  -6.118  -33.583   -7.950   8.850  -0.177   1.235  H28  XOY  79  
XOY  H29  H29  H   0  1  N  N  N  -6.368  -34.501   -9.474   7.550   0.292   2.356  H29  XOY  80  
XOY  H30  H30  H   0  1  N  N  N  -5.990  -33.469  -11.608  10.005   1.493  -0.097  H30  XOY  81  
XOY  H31  H31  H   0  1  N  N  N  -5.794  -31.387  -12.921  10.695   3.850  -0.284  H31  XOY  82  
XOY  H32  H32  H   0  1  N  N  N   2.927  -26.927   -1.126  -5.227  -2.229   2.239  H32  XOY  83  
XOY  H33  H33  H   0  1  N  N  N  -5.255  -29.258  -11.783   9.484   5.590   0.970  H33  XOY  84  
XOY  H34  H34  H   0  1  N  N  N  -4.934  -29.228   -9.329   7.584   4.973   2.409  H34  XOY  85  
XOY  H35  H35  H   0  1  N  N  N  -5.124  -31.314   -8.023   6.893   2.617   2.594  H35  XOY  86  
XOY  H36  H36  H   0  1  N  N  N   3.651  -29.285   -0.862  -4.973   0.214   2.374  H36  XOY  87  
XOY  H37  H37  H   0  1  N  N  N   5.919  -30.129    0.653  -6.716   2.161   3.248  H37  XOY  88  
XOY  H38  H38  H   0  1  N  N  N   6.830  -32.411    0.892  -6.467   4.606   3.371  H38  XOY  89  
XOY  H40  H40  H   0  1  N  N  N  -3.508  -34.690   -5.629   3.902  -0.895   0.368  H40  XOY  90  
XOY  H41  H41  H   0  1  N  N  N  -5.892  -37.745   -4.352   5.727  -5.411  -0.314  H41  XOY  91  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XOY  C39  C40  DOUB  Y  N   1  
XOY  C39  C38  SING  Y  N   2  
XOY  C40  C41  SING  Y  N   3  
XOY  C38  C37  DOUB  Y  N   4  
XOY  C41  C42  DOUB  Y  N   5  
XOY  C37  C42  SING  Y  N   6  
XOY  C37  C36  SING  N  N   7  
XOY  C36  S1   SING  N  N   8  
XOY  S1   C35  SING  N  N   9  
XOY  C35  C33  SING  N  N  10  
XOY  C29  C28  SING  N  N  11  
XOY  C33  C34  SING  N  N  12  
XOY  C33  N3   SING  N  N  13  
XOY  O4   C34  DOUB  N  N  14  
XOY  C27  C28  DOUB  Y  N  15  
XOY  C27  C26  SING  Y  N  16  
XOY  C28  C30  SING  Y  N  17  
XOY  C34  O3   SING  N  N  18  
XOY  N3   C32  SING  N  N  19  
XOY  C26  C25  DOUB  Y  N  20  
XOY  C30  C31  DOUB  Y  N  21  
XOY  C32  O2   DOUB  N  N  22  
XOY  C32  N2   SING  N  N  23  
XOY  O1   C23  DOUB  N  N  24  
XOY  C25  C31  SING  Y  N  25  
XOY  C25  C24  SING  N  N  26  
XOY  N2   C23  SING  N  N  27  
XOY  N2   C24  SING  N  N  28  
XOY  C23  C21  SING  N  N  29  
XOY  C20  C21  DOUB  Y  N  30  
XOY  C20  C19  SING  Y  N  31  
XOY  C21  C22  SING  Y  N  32  
XOY  C19  C17  DOUB  Y  N  33  
XOY  C22  C16  DOUB  Y  N  34  
XOY  C17  C16  SING  Y  N  35  
XOY  C17  C18  SING  N  N  36  
XOY  C16  C15  SING  N  N  37  
XOY  C4   C5   DOUB  Y  N  38  
XOY  C4   C3   SING  Y  N  39  
XOY  C5   C6   SING  Y  N  40  
XOY  C18  N1   SING  N  N  41  
XOY  CL3  C3   SING  N  N  42  
XOY  C3   C2   DOUB  Y  N  43  
XOY  C15  C14  SING  N  N  44  
XOY  C8   C9   DOUB  Y  N  45  
XOY  C8   C7   SING  Y  N  46  
XOY  C9   C10  SING  Y  N  47  
XOY  C6   C7   SING  N  N  48  
XOY  C6   C1   DOUB  Y  N  49  
XOY  C7   C12  DOUB  Y  N  50  
XOY  N1   C14  SING  N  N  51  
XOY  N1   C13  SING  N  N  52  
XOY  C10  C11  DOUB  Y  N  53  
XOY  C12  C11  SING  Y  N  54  
XOY  C12  C13  SING  N  N  55  
XOY  C2   C1   SING  Y  N  56  
XOY  C1   H1   SING  N  N  57  
XOY  C10  H2   SING  N  N  58  
XOY  C11  H3   SING  N  N  59  
XOY  C13  H4   SING  N  N  60  
XOY  C13  H5   SING  N  N  61  
XOY  C14  H6   SING  N  N  62  
XOY  C14  H7   SING  N  N  63  
XOY  C15  H8   SING  N  N  64  
XOY  C15  H9   SING  N  N  65  
XOY  C18  H10  SING  N  N  66  
XOY  C18  H11  SING  N  N  67  
XOY  C19  H12  SING  N  N  68  
XOY  C2   H13  SING  N  N  69  
XOY  C20  H14  SING  N  N  70  
XOY  C22  H15  SING  N  N  71  
XOY  C24  H16  SING  N  N  72  
XOY  C24  H17  SING  N  N  73  
XOY  C26  H18  SING  N  N  74  
XOY  C27  H19  SING  N  N  75  
XOY  C29  H20  SING  N  N  76  
XOY  C29  H21  SING  N  N  77  
XOY  C29  H22  SING  N  N  78  
XOY  C30  H23  SING  N  N  79  
XOY  C31  H24  SING  N  N  80  
XOY  C33  H25  SING  N  N  81  
XOY  C35  H26  SING  N  N  82  
XOY  C35  H27  SING  N  N  83  
XOY  C36  H28  SING  N  N  84  
XOY  C36  H29  SING  N  N  85  
XOY  C38  H30  SING  N  N  86  
XOY  C39  H31  SING  N  N  87  
XOY  C4   H32  SING  N  N  88  
XOY  C40  H33  SING  N  N  89  
XOY  C41  H34  SING  N  N  90  
XOY  C42  H35  SING  N  N  91  
XOY  C5   H36  SING  N  N  92  
XOY  C8   H37  SING  N  N  93  
XOY  C9   H38  SING  N  N  94  
XOY  N3   H40  SING  N  N  95  
XOY  O3   H41  SING  N  N  96  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XOY  SMILES            ACDLabs               12.01  "c1cc(ccc1c2c(cccc2)CN3CCc4c(C3)ccc(c4)C(N(Cc5ccc(cc5)C)C(=O)NC(C(O)=O)CSCc6ccccc6)=O)Cl"  
XOY  InChI             InChI                 1.03   "InChI=1S/C42H40ClN3O4S/c1-29-11-13-30(14-12-29)24-46(42(50)44-39(41(48)49)28-51-27-31-7-3-2-4-8-31)40(47)34-15-16-35-25-45(22-21-33(35)23-34)26-36-9-5-6-10-38(36)32-17-19-37(43)20-18-32/h2-20,23,39H,21-22,24-28H2,1H3,(H,44,50)(H,48,49)/t39-/m0/s1"  
XOY  InChIKey          InChI                 1.03   OFVMPKFGKDQYKS-KDXMTYKHSA-N  
XOY  SMILES_CANONICAL  CACTVS                3.385  "Cc1ccc(CN(C(=O)N[C@@H](CSCc2ccccc2)C(O)=O)C(=O)c3ccc4CN(CCc4c3)Cc5ccccc5c6ccc(Cl)cc6)cc1"  
XOY  SMILES            CACTVS                3.385  "Cc1ccc(CN(C(=O)N[CH](CSCc2ccccc2)C(O)=O)C(=O)c3ccc4CN(CCc4c3)Cc5ccccc5c6ccc(Cl)cc6)cc1"  
XOY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "Cc1ccc(cc1)CN(C(=O)c2ccc3c(c2)CCN(C3)Cc4ccccc4c5ccc(cc5)Cl)C(=O)N[C@@H](CSCc6ccccc6)C(=O)O"  
XOY  SMILES            "OpenEye OEToolkits"  2.0.6  "Cc1ccc(cc1)CN(C(=O)c2ccc3c(c2)CCN(C3)Cc4ccccc4c5ccc(cc5)Cl)C(=O)NC(CSCc6ccccc6)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XOY  "SYSTEMATIC NAME"  ACDLabs               12.01  "S-benzyl-N-({2-[(4'-chloro[1,1'-biphenyl]-2-yl)methyl]-1,2,3,4-tetrahydroisoquinoline-6-carbonyl}[(4-methylphenyl)methyl]carbamoyl)-L-cysteine"  
XOY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{R})-2-[[[2-[[2-(4-chlorophenyl)phenyl]methyl]-3,4-dihydro-1~{H}-isoquinolin-6-yl]carbonyl-[(4-methylphenyl)methyl]carbamoyl]amino]-3-(phenylmethylsulfanyl)propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XOY  "Create component"  2018-01-24  RCSB  
XOY  "Modify name"       2019-11-05  RCSB  
XOY  "Initial release"   2021-05-05  RCSB  
##
