data_ZOY
# 
_chem_comp.id                                    ZOY 
_chem_comp.name                                  "N-[(4S)-4,5-diamino-5-oxopentyl]-10-phenyldecanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H35 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-05-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        361.522 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZOY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7MX1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZOY N   N1  N 0 1 N N N N N N 115.130 -3.320 12.478 -9.422  1.558  0.555  N   ZOY 1  
ZOY C1  C1  C 0 1 N N S N N N 115.933 -2.264 11.870 -9.336  0.322  -0.233 C1  ZOY 2  
ZOY C16 C2  C 0 1 N N N N N N 120.406 -6.905 11.233 -1.946  0.736  -0.404 C16 ZOY 3  
ZOY C17 C3  C 0 1 N N N N N N 121.885 -6.916 11.615 -0.676  -0.026 -0.022 C17 ZOY 4  
ZOY C18 C4  C 0 1 N N N N N N 122.830 -6.857 10.391 0.551   0.795  -0.421 C18 ZOY 5  
ZOY C19 C5  C 0 1 N N N N N N 124.242 -7.357 10.700 1.822   0.032  -0.039 C19 ZOY 6  
ZOY C2  C6  C 0 1 N N N N N N 116.489 -2.720 10.496 -8.066  -0.441 0.149  C2  ZOY 7  
ZOY C20 C7  C 0 1 N N N N N N 125.137 -6.377 11.403 3.049   0.853  -0.439 C20 ZOY 8  
ZOY C21 C8  C 0 1 N N N N N N 126.499 -6.972 11.647 4.319   0.091  -0.056 C21 ZOY 9  
ZOY C22 C9  C 0 1 N N N N N N 127.621 -6.041 12.049 5.547   0.912  -0.456 C22 ZOY 10 
ZOY C23 C10 C 0 1 N N N N N N 127.925 -6.022 13.513 6.817   0.150  -0.074 C23 ZOY 11 
ZOY C24 C11 C 0 1 N N N N N N 129.184 -5.228 13.879 8.045   0.971  -0.474 C24 ZOY 12 
ZOY C25 C12 C 0 1 Y N N N N N 130.478 -6.004 13.968 9.296   0.220  -0.097 C25 ZOY 13 
ZOY C26 C13 C 0 1 Y N N N N N 131.389 -5.975 12.923 9.861   0.401  1.151  C26 ZOY 14 
ZOY C27 C14 C 0 1 Y N N N N N 132.576 -6.678 12.998 11.009  -0.287 1.497  C27 ZOY 15 
ZOY C28 C15 C 0 1 Y N N N N N 132.877 -7.418 14.110 11.591  -1.158 0.594  C28 ZOY 16 
ZOY C29 C16 C 0 1 Y N N N N N 131.982 -7.458 15.163 11.024  -1.341 -0.654 C29 ZOY 17 
ZOY C3  C17 C 0 1 N N N N N N 117.294 -4.008 10.635 -6.838  0.380  -0.251 C3  ZOY 18 
ZOY C30 C18 C 0 1 Y N N N N N 130.793 -6.754 15.091 9.874   -0.655 -0.998 C30 ZOY 19 
ZOY C4  C19 C 0 1 N N N N N N 118.264 -4.402 9.490  -5.568  -0.382 0.132  C4  ZOY 20 
ZOY C5  C20 C 0 1 N N N N N N 119.947 -5.557 10.789 -3.155  -0.072 -0.010 C5  ZOY 21 
ZOY C6  C21 C 0 1 N N N N N N 115.086 -1.004 11.671 -10.542 -0.538 0.048  C6  ZOY 22 
ZOY N1  N2  N 0 1 N N N N N N 118.887 -5.612 9.984  -4.393  0.404  -0.251 N1  ZOY 23 
ZOY N2  N3  N 0 1 N N N N N N 115.695 0.161  11.831 -10.899 -1.503 -0.823 N2  ZOY 24 
ZOY O1  O1  O 0 1 N N N N N N 120.491 -4.506 11.120 -3.015  -1.152 0.524  O1  ZOY 25 
ZOY O2  O2  O 0 1 N N N N N N 113.899 -1.122 11.373 -11.190 -0.361 1.057  O2  ZOY 26 
ZOY H1  H1  H 0 1 N N N N N N 114.781 -3.007 13.361 -10.218 2.111  0.276  H1  ZOY 27 
ZOY H8  H2  H 0 1 N N N N N N 114.363 -3.543 11.877 -9.451  1.355  1.543  H8  ZOY 28 
ZOY H   H4  H 0 1 N N N N N N 116.782 -2.019 12.526 -9.306  0.569  -1.294 H   ZOY 29 
ZOY H5  H5  H 0 1 N N N N N N 119.812 -7.211 12.107 -1.965  1.694  0.115  H5  ZOY 30 
ZOY H3  H6  H 0 1 N N N N N N 120.247 -7.621 10.413 -1.958  0.906  -1.481 H3  ZOY 31 
ZOY H30 H7  H 0 1 N N N N N N 122.095 -7.839 12.175 -0.665  -0.196 1.055  H30 ZOY 32 
ZOY H31 H8  H 0 1 N N N N N N 122.087 -6.045 12.255 -0.657  -0.984 -0.541 H31 ZOY 33 
ZOY H32 H9  H 0 1 N N N N N N 122.895 -5.814 10.049 0.540   0.965  -1.498 H32 ZOY 34 
ZOY H33 H10 H 0 1 N N N N N N 122.405 -7.480 9.590  0.533   1.753  0.098  H33 ZOY 35 
ZOY H34 H11 H 0 1 N N N N N N 124.153 -8.251 11.335 1.833   -0.137 1.038  H34 ZOY 36 
ZOY H35 H12 H 0 1 N N N N N N 124.720 -7.630 9.748  1.840   -0.926 -0.558 H35 ZOY 37 
ZOY H9  H13 H 0 1 N N N N N N 117.139 -1.931 10.091 -8.054  -0.610 1.226  H9  ZOY 38 
ZOY H10 H14 H 0 1 N N N N N N 115.649 -2.893 9.807  -8.047  -1.399 -0.370 H10 ZOY 39 
ZOY H36 H15 H 0 1 N N N N N N 125.244 -5.476 10.781 3.038   1.023  -1.516 H36 ZOY 40 
ZOY H37 H16 H 0 1 N N N N N N 124.685 -6.105 12.368 3.030   1.812  0.080  H37 ZOY 41 
ZOY H39 H17 H 0 1 N N N N N N 126.391 -7.718 12.448 4.331   -0.079 1.020  H39 ZOY 42 
ZOY H38 H18 H 0 1 N N N N N N 126.808 -7.474 10.718 4.338   -0.867 -0.576 H38 ZOY 43 
ZOY H40 H19 H 0 1 N N N N N N 128.531 -6.351 11.514 5.535   1.082  -1.533 H40 ZOY 44 
ZOY H41 H20 H 0 1 N N N N N N 127.346 -5.021 11.743 5.528   1.870  0.063  H41 ZOY 45 
ZOY H42 H21 H 0 1 N N N N N N 127.069 -5.574 14.038 6.828   -0.020 1.003  H42 ZOY 46 
ZOY H43 H22 H 0 1 N N N N N N 128.060 -7.060 13.852 6.836   -0.809 -0.593 H43 ZOY 47 
ZOY H44 H23 H 0 1 N N N N N N 129.317 -4.446 13.117 8.033   1.140  -1.551 H44 ZOY 48 
ZOY H45 H24 H 0 1 N N N N N N 129.009 -4.760 14.859 8.026   1.929  0.045  H45 ZOY 49 
ZOY H46 H25 H 0 1 N N N N N N 131.168 -5.395 12.039 9.407   1.082  1.856  H46 ZOY 50 
ZOY H47 H26 H 0 1 N N N N N N 133.272 -6.644 12.173 11.451  -0.145 2.471  H47 ZOY 51 
ZOY H48 H27 H 0 1 N N N N N N 133.806 -7.966 14.164 12.488  -1.696 0.864  H48 ZOY 52 
ZOY H49 H28 H 0 1 N N N N N N 132.211 -8.040 16.043 11.479  -2.021 -1.359 H49 ZOY 53 
ZOY H12 H29 H 0 1 N N N N N N 116.573 -4.831 10.747 -6.850  0.550  -1.327 H12 ZOY 54 
ZOY H11 H30 H 0 1 N N N N N N 117.894 -3.918 11.553 -6.857  1.339  0.268  H11 ZOY 55 
ZOY H50 H31 H 0 1 N N N N N N 130.102 -6.789 15.920 9.430   -0.800 -1.971 H50 ZOY 56 
ZOY H13 H32 H 0 1 N N N N N N 119.013 -3.615 9.319  -5.557  -0.552 1.208  H13 ZOY 57 
ZOY H14 H33 H 0 1 N N N N N N 117.715 -4.594 8.557  -5.549  -1.340 -0.387 H14 ZOY 58 
ZOY H15 H34 H 0 1 N N N N N N 118.516 -6.502 9.717  -4.505  1.268  -0.678 H15 ZOY 59 
ZOY H17 H35 H 0 1 N N N N N N 115.185 1.013  11.709 -10.380 -1.644 -1.630 H17 ZOY 60 
ZOY H16 H36 H 0 1 N N N N N N 116.665 0.189  12.074 -11.675 -2.056 -0.642 H16 ZOY 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZOY C4  N1  SING N N 1  
ZOY C4  C3  SING N N 2  
ZOY N1  C5  SING N N 3  
ZOY C18 C19 SING N N 4  
ZOY C18 C17 SING N N 5  
ZOY C2  C3  SING N N 6  
ZOY C2  C1  SING N N 7  
ZOY C19 C20 SING N N 8  
ZOY C5  O1  DOUB N N 9  
ZOY C5  C16 SING N N 10 
ZOY C16 C17 SING N N 11 
ZOY O2  C6  DOUB N N 12 
ZOY C20 C21 SING N N 13 
ZOY C21 C22 SING N N 14 
ZOY C6  N2  SING N N 15 
ZOY C6  C1  SING N N 16 
ZOY C1  N   SING N N 17 
ZOY C22 C23 SING N N 18 
ZOY C26 C27 DOUB Y N 19 
ZOY C26 C25 SING Y N 20 
ZOY C27 C28 SING Y N 21 
ZOY C23 C24 SING N N 22 
ZOY C24 C25 SING N N 23 
ZOY C25 C30 DOUB Y N 24 
ZOY C28 C29 DOUB Y N 25 
ZOY C30 C29 SING Y N 26 
ZOY N   H1  SING N N 27 
ZOY N   H8  SING N N 28 
ZOY C1  H   SING N N 29 
ZOY C16 H5  SING N N 30 
ZOY C16 H3  SING N N 31 
ZOY C17 H30 SING N N 32 
ZOY C17 H31 SING N N 33 
ZOY C18 H32 SING N N 34 
ZOY C18 H33 SING N N 35 
ZOY C19 H34 SING N N 36 
ZOY C19 H35 SING N N 37 
ZOY C2  H9  SING N N 38 
ZOY C2  H10 SING N N 39 
ZOY C20 H36 SING N N 40 
ZOY C20 H37 SING N N 41 
ZOY C21 H39 SING N N 42 
ZOY C21 H38 SING N N 43 
ZOY C22 H40 SING N N 44 
ZOY C22 H41 SING N N 45 
ZOY C23 H42 SING N N 46 
ZOY C23 H43 SING N N 47 
ZOY C24 H44 SING N N 48 
ZOY C24 H45 SING N N 49 
ZOY C26 H46 SING N N 50 
ZOY C27 H47 SING N N 51 
ZOY C28 H48 SING N N 52 
ZOY C29 H49 SING N N 53 
ZOY C3  H12 SING N N 54 
ZOY C3  H11 SING N N 55 
ZOY C30 H50 SING N N 56 
ZOY C4  H13 SING N N 57 
ZOY C4  H14 SING N N 58 
ZOY N1  H15 SING N N 59 
ZOY N2  H17 SING N N 60 
ZOY N2  H16 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZOY SMILES           ACDLabs              12.01 "NC(=O)C(N)CCCNC(=O)CCCCCCCCCc1ccccc1"                                                                                                                                
ZOY InChI            InChI                1.03  "InChI=1S/C21H35N3O2/c22-19(21(23)26)15-11-17-24-20(25)16-10-5-3-1-2-4-7-12-18-13-8-6-9-14-18/h6,8-9,13-14,19H,1-5,7,10-12,15-17,22H2,(H2,23,26)(H,24,25)/t19-/m0/s1" 
ZOY InChIKey         InChI                1.03  PXLGZFSIHCIIGA-IBGZPJMESA-N                                                                                                                                           
ZOY SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCCNC(=O)CCCCCCCCCc1ccccc1)C(N)=O"                                                                                                                           
ZOY SMILES           CACTVS               3.385 "N[CH](CCCNC(=O)CCCCCCCCCc1ccccc1)C(N)=O"                                                                                                                             
ZOY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCCCCCCCCC(=O)NCCC[C@@H](C(=O)N)N"                                                                                                                         
ZOY SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCCCCCCCCC(=O)NCCCC(C(=O)N)N"                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZOY "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(4S)-4,5-diamino-5-oxopentyl]-10-phenyldecanamide"                       
ZOY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(4~{S})-4,5-bis(azanyl)-5-oxidanylidene-pentyl]-10-phenyl-decanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZOY "Create component" 2021-05-18 RCSB 
ZOY "Initial release"  2022-03-30 RCSB 
ZOY "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 ZOY TPO None Lipid/lipid-like "Amino-acid backbone"   C-terminal     N   C  ? ? 
2 ZOY ALA None Lipid/lipid-like "Amino-acid side chain" "Any position" C16 CB ? ? 
# 
