data_5IZ
# 
_chem_comp.id                                    5IZ 
_chem_comp.name                                  "(2S,3S)-3-methyl-N-[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(E)-3-phenylprop-2-enoyl]amino]pentanamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H31 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        413.510 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5IZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7WOF 
_chem_comp.pdbx_subcomponent_list                "TCA ILE ELF" 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5IZ C20 C5  C 0 1 N N N N N N -11.206 11.697 69.362 2.485  0.217  0.595  C1   TCA 1  
5IZ O29 O3  O 0 1 N N N N N N -11.589 11.854 68.286 2.290  0.084  1.789  O    TCA 2  
5IZ C21 C6  C 0 1 N N N N N N -10.890 10.324 69.910 3.796  -0.105 0.028  C2   TCA 3  
5IZ C22 C7  C 0 1 N N N N N N -10.209 9.484  69.087 4.787  -0.548 0.829  C3   TCA 4  
5IZ C23 C21 C 0 1 Y N N N N N -10.009 8.188  69.826 6.105  -0.871 0.259  C31  TCA 5  
5IZ C24 C8  C 0 1 Y N N N N N -10.173 6.966  69.180 7.135  -1.331 1.086  C32  TCA 6  
5IZ C25 C22 C 0 1 Y N N N N N -9.979  5.746  69.921 8.366  -1.632 0.544  C33  TCA 7  
5IZ C26 C9  C 0 1 Y N N N N N -9.634  5.792  71.289 8.585  -1.481 -0.814 C34  TCA 8  
5IZ C27 C23 C 0 1 Y N N N N N -9.477  7.026  71.937 7.571  -1.026 -1.639 C35  TCA 9  
5IZ C28 C10 C 0 1 Y N N N N N -9.670  8.228  71.212 6.334  -0.721 -1.112 C36  TCA 10 
5IZ N19 N3  N 0 1 N N N N N N -11.010 12.816 70.270 1.495  0.660  -0.205 N    ILE 11 
5IZ C14 C18 C 0 1 N N S N N N -11.293 14.216 69.926 0.220  1.086  0.376  CA   ILE 12 
5IZ C13 C2  C 0 1 N N N N N N -10.665 14.697 68.623 -0.885 0.868  -0.626 C    ILE 13 
5IZ O30 O4  O 0 1 N N N N N N -9.501  14.580 68.435 -0.616 0.645  -1.787 O    ILE 14 
5IZ C15 C3  C 0 1 N N S N N N -10.782 15.013 71.073 0.295  2.570  0.738  CB   ILE 15 
5IZ C17 C4  C 0 1 N N N N N N -11.539 14.526 72.377 -0.998 2.990  1.441  CG1  ILE 16 
5IZ C16 C19 C 0 1 N N N N N N -11.066 16.483 70.815 0.474  3.398  -0.536 CG2  ILE 17 
5IZ C18 C20 C 0 1 N N N N N N -13.092 14.702 72.290 -1.092 2.288  2.797  CD1  ILE 18 
5IZ C07 C16 C 0 1 N N N N N N -9.008  11.922 65.173 -4.116 -3.490 -0.555 C6   ELF 19 
5IZ C03 C12 C 0 1 N N S N N N -10.856 15.757 66.378 -3.248 0.801  -1.219 C11  ELF 20 
5IZ C06 C15 C 0 1 N N N N N N -9.468  13.274 65.348 -4.062 -2.063 -1.113 C13  ELF 21 
5IZ C10 C1  C 0 1 N N N N N N -11.586 12.592 64.054 -5.511 -1.503 0.823  C15  ELF 22 
5IZ C04 C13 C 0 1 N N N N N N -11.336 14.868 65.117 -4.525 0.321  -0.527 C17  ELF 23 
5IZ C02 C11 C 0 1 N N N N N N -11.137 17.220 66.091 -3.497 2.144  -1.857 C24  ELF 24 
5IZ C05 C14 C 0 1 N N S N N N -10.914 13.368 65.262 -4.301 -1.083 0.038  C25  ELF 25 
5IZ C08 C17 C 0 1 N N N N N N -9.249  11.477 63.764 -5.548 -3.787 -0.107 C27  ELF 26 
5IZ N12 N1  N 0 1 N N N N N N -11.494 15.319 67.604 -2.173 0.922  -0.231 N3   ELF 27 
5IZ N09 N2  N 0 1 N N N N N N -10.708 11.613 63.281 -6.042 -2.725 0.761  N4   ELF 28 
5IZ O01 O1  O 0 1 N N N N N N -10.666 17.718 65.034 -2.844 3.102  -1.521 O3   ELF 29 
5IZ O11 O2  O 0 1 N N N N N N -12.667 12.762 63.792 -6.029 -0.689 1.558  O4   ELF 30 
5IZ H5  H5  H 0 1 N N N N N N -11.190 10.026 70.904 3.970  0.013  -1.031 H2   TCA 31 
5IZ H7  H7  H 0 1 N N N N N N -9.873  9.706  68.085 4.613  -0.665 1.888  H3   TCA 32 
5IZ H9  H9  H 0 1 N N N N N N -10.443 6.933  68.135 6.967  -1.445 2.147  H32  TCA 33 
5IZ H30 H30 H 0 1 N N N N N N -10.098 4.792  69.428 9.163  -1.987 1.182  H33  TCA 34 
5IZ H10 H10 H 0 1 N N N N N N -9.490  4.874  71.839 9.552  -1.718 -1.232 H34  TCA 35 
5IZ H31 H31 H 0 1 N N N N N N -9.210  7.060  72.983 7.749  -0.911 -2.698 H35  TCA 36 
5IZ H11 H11 H 0 1 N N N N N N -9.560  9.180  71.711 5.543  -0.366 -1.758 H36  TCA 37 
5IZ H33 H33 H 0 1 N N N N N N -10.661 12.620 71.186 1.628  0.696  -1.165 H2   ILE 38 
5IZ H23 H23 H 0 1 N N N N N N -12.382 14.355 69.856 0.016  0.502  1.274  HA   ILE 39 
5IZ H2  H2  H 0 1 N N N N N N -9.701  14.854 71.202 1.141  2.739  1.404  HB   ILE 40 
5IZ H3  H3  H 0 1 N N N N N N -11.316 13.460 72.533 -0.997 4.069  1.589  HG12 ILE 41 
5IZ H4  H4  H 0 1 N N N N N N -11.169 15.108 73.234 -1.854 2.708  0.826  HG13 ILE 42 
5IZ H24 H24 H 0 1 N N N N N N -10.692 17.083 71.658 0.616  4.446  -0.272 HG21 ILE 43 
5IZ H25 H25 H 0 1 N N N N N N -10.561 16.797 69.889 1.347  3.039  -1.082 HG22 ILE 44 
5IZ H26 H26 H 0 1 N N N N N N -12.151 16.634 70.711 -0.412 3.298  -1.162 HG23 ILE 45 
5IZ H27 H27 H 0 1 N N N N N N -13.555 14.347 73.223 -1.031 1.209  2.654  HD11 ILE 46 
5IZ H28 H28 H 0 1 N N N N N N -13.333 15.765 72.143 -0.271 2.617  3.434  HD12 ILE 47 
5IZ H29 H29 H 0 1 N N N N N N -13.480 14.118 71.443 -2.042 2.539  3.271  HD13 ILE 48 
5IZ H19 H19 H 0 1 N N N N N N -9.553  11.260 65.862 -3.821 -4.197 -1.330 H1   ELF 49 
5IZ H20 H20 H 0 1 N N N N N N -7.931  11.873 65.391 -3.439 -3.576 0.295  H2   ELF 50 
5IZ H13 H13 H 0 1 N N N N N N -9.768  15.626 66.471 -2.958 0.083  -1.986 H3   ELF 51 
5IZ H17 H17 H 0 1 N N N N N N -9.146  13.634 66.336 -4.836 -1.936 -1.870 H4   ELF 52 
5IZ H18 H18 H 0 1 N N N N N N -9.023  13.905 64.565 -3.083 -1.878 -1.555 H5   ELF 53 
5IZ H14 H14 H 0 1 N N N N N N -10.884 15.277 64.201 -4.777 1.003  0.285  H6   ELF 54 
5IZ H15 H15 H 0 1 N N N N N N -12.432 14.923 65.041 -5.342 0.296  -1.248 H7   ELF 55 
5IZ H12 H12 H 0 1 N N N N N N -11.724 17.817 66.773 -4.259 2.249  -2.615 H8   ELF 56 
5IZ H16 H16 H 0 1 N N N N N N -11.358 12.983 66.192 -3.430 -1.076 0.692  H9   ELF 57 
5IZ H21 H21 H 0 1 N N N N N N -8.960  10.418 63.686 -6.191 -3.864 -0.984 H10  ELF 58 
5IZ H22 H22 H 0 1 N N N N N N -8.612  12.081 63.101 -5.566 -4.731 0.438  H11  ELF 59 
5IZ H1  H1  H 0 1 N N N N N N -12.476 15.441 67.745 -2.388 1.041  0.708  H12  ELF 60 
5IZ H32 H32 H 0 1 N N N N N N -11.058 11.089 62.505 -6.804 -2.919 1.328  H15  ELF 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5IZ N09 C08 SING N N 1  
5IZ N09 C10 SING N N 2  
5IZ C08 C07 SING N N 3  
5IZ O11 C10 DOUB N N 4  
5IZ C10 C05 SING N N 5  
5IZ O01 C02 DOUB N N 6  
5IZ C04 C05 SING N N 7  
5IZ C04 C03 SING N N 8  
5IZ C07 C06 SING N N 9  
5IZ C05 C06 SING N N 10 
5IZ C02 C03 SING N N 11 
5IZ C03 N12 SING N N 12 
5IZ N12 C13 SING N N 13 
5IZ O29 C20 DOUB N N 14 
5IZ O30 C13 DOUB N N 15 
5IZ C13 C14 SING N N 16 
5IZ C22 C23 SING N N 17 
5IZ C22 C21 DOUB N E 18 
5IZ C24 C23 DOUB Y N 19 
5IZ C24 C25 SING Y N 20 
5IZ C20 C21 SING N N 21 
5IZ C20 N19 SING N N 22 
5IZ C23 C28 SING Y N 23 
5IZ C25 C26 DOUB Y N 24 
5IZ C14 N19 SING N N 25 
5IZ C14 C15 SING N N 26 
5IZ C16 C15 SING N N 27 
5IZ C15 C17 SING N N 28 
5IZ C28 C27 DOUB Y N 29 
5IZ C26 C27 SING Y N 30 
5IZ C18 C17 SING N N 31 
5IZ N12 H1  SING N N 32 
5IZ C15 H2  SING N N 33 
5IZ C17 H3  SING N N 34 
5IZ C17 H4  SING N N 35 
5IZ C21 H5  SING N N 36 
5IZ C22 H7  SING N N 37 
5IZ C24 H9  SING N N 38 
5IZ C26 H10 SING N N 39 
5IZ C28 H11 SING N N 40 
5IZ C02 H12 SING N N 41 
5IZ C03 H13 SING N N 42 
5IZ C04 H14 SING N N 43 
5IZ C04 H15 SING N N 44 
5IZ C05 H16 SING N N 45 
5IZ C06 H17 SING N N 46 
5IZ C06 H18 SING N N 47 
5IZ C07 H19 SING N N 48 
5IZ C07 H20 SING N N 49 
5IZ C08 H21 SING N N 50 
5IZ C08 H22 SING N N 51 
5IZ C14 H23 SING N N 52 
5IZ C16 H24 SING N N 53 
5IZ C16 H25 SING N N 54 
5IZ C16 H26 SING N N 55 
5IZ C18 H27 SING N N 56 
5IZ C18 H28 SING N N 57 
5IZ C18 H29 SING N N 58 
5IZ C25 H30 SING N N 59 
5IZ C27 H31 SING N N 60 
5IZ N09 H32 SING N N 61 
5IZ N19 H33 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5IZ InChI            InChI                1.03  "InChI=1S/C23H31N3O4/c1-3-16(2)21(26-20(28)12-11-17-8-5-4-6-9-17)23(30)25-19(15-27)14-18-10-7-13-24-22(18)29/h4-6,8-9,11-12,15-16,18-19,21H,3,7,10,13-14H2,1-2H3,(H,24,29)(H,25,30)(H,26,28)/b12-11+/t16-,18-,19-,21-/m0/s1" 
5IZ InChIKey         InChI                1.03  LLWUOBUNLOPRDK-VXUGWXBBSA-N                                                                                                                                                                                                  
5IZ SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C)[C@H](NC(=O)/C=C/c1ccccc1)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O"                                                                                                                                                      
5IZ SMILES           CACTVS               3.385 "CC[CH](C)[CH](NC(=O)C=Cc1ccccc1)C(=O)N[CH](C[CH]2CCCNC2=O)C=O"                                                                                                                                                              
5IZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)/C=C/c2ccccc2"                                                                                                                                                     
5IZ SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(C)C(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C=Cc2ccccc2"                                                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           5IZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S})-3-methyl-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(~{E})-3-phenylprop-2-enoyl]amino]pentanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5IZ "Create component" 2022-02-02 PDBJ 
5IZ "Initial release"  2022-04-13 RCSB 
5IZ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5IZ 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C02 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
