data_8IZ
# 
_chem_comp.id                                    8IZ 
_chem_comp.name                                  "5-[(2S,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1-methyl-pyrimidine-2,4-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H14 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-17 
_chem_comp.pdbx_modified_date                    2022-06-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        258.228 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8IZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7W93 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8IZ C10 C1  C 0 1 N N N 74.755 -26.993 -9.482  0.819  -0.167 -0.245 C10 8IZ 1  
8IZ C02 C2  C 0 1 N N R 73.107 -28.655 -8.297  -1.260 -1.147 0.771  C02 8IZ 2  
8IZ C03 C3  C 0 1 N N S 73.752 -27.284 -8.364  -0.613 -0.557 -0.507 C03 8IZ 3  
8IZ C05 C4  C 0 1 N N R 73.411 -27.311 -6.078  -2.782 0.252  -0.519 C05 8IZ 4  
8IZ C06 C5  C 0 1 N N N 74.124 -27.472 -4.647  -3.539 1.460  0.036  C06 8IZ 5  
8IZ C08 C6  C 0 1 N N S 72.794 -28.640 -6.713  -2.765 -0.881 0.525  C08 8IZ 6  
8IZ C11 C7  C 0 1 N N N 74.860 -25.725 -10.189 1.124  0.872  0.667  C11 8IZ 7  
8IZ C14 C8  C 0 1 N N N 76.790 -26.416 -11.391 3.399  0.553  0.242  C14 8IZ 8  
8IZ C17 C9  C 0 1 N N N 77.764 -28.918 -10.838 4.218  -1.130 -1.310 C17 8IZ 9  
8IZ C18 C10 C 0 1 N N N 75.714 -28.002 -9.645  1.829  -0.806 -0.874 C18 8IZ 10 
8IZ N13 N1  N 0 1 N N N 75.858 -25.403 -11.189 2.412  1.203  0.886  N13 8IZ 11 
8IZ N16 N2  N 0 1 N N N 76.717 -27.781 -10.590 3.123  -0.439 -0.624 N16 8IZ 12 
8IZ O01 O1  O 0 1 N N N 72.009 -28.720 -9.161  -1.000 -2.549 0.875  O01 8IZ 13 
8IZ O04 O2  O 0 1 N N N 74.340 -27.027 -7.113  -1.416 0.611  -0.783 O04 8IZ 14 
8IZ O07 O3  O 0 1 N N N 74.611 -26.217 -4.244  -3.645 2.463  -0.976 O07 8IZ 15 
8IZ O09 O4  O 0 1 N N N 71.422 -28.548 -6.551  -3.402 -2.050 0.005  O09 8IZ 16 
8IZ O12 O5  O 0 1 N N N 74.041 -24.824 -10.044 0.231  1.460  1.250  O12 8IZ 17 
8IZ O15 O6  O 0 1 N N N 77.684 -26.233 -12.212 4.556  0.862  0.449  O15 8IZ 18 
8IZ H1  H1  H 0 1 N N N 73.849 -29.438 -8.509  -0.913 -0.623 1.661  H1  8IZ 19 
8IZ H2  H2  H 0 1 N N N 72.931 -26.565 -8.498  -0.671 -1.269 -1.331 H2  8IZ 20 
8IZ H3  H3  H 0 1 N N N 72.627 -26.542 -6.008  -3.260 -0.095 -1.435 H3  8IZ 21 
8IZ H4  H4  H 0 1 N N N 73.396 -27.841 -3.910  -4.537 1.152  0.348  H4  8IZ 22 
8IZ H5  H5  H 0 1 N N N 74.958 -28.185 -4.727  -3.000 1.864  0.893  H5  8IZ 23 
8IZ H6  H6  H 0 1 N N N 73.233 -29.528 -6.235  -3.251 -0.561 1.446  H6  8IZ 24 
8IZ H7  H7  H 0 1 N N N 77.537 -29.774 -10.186 5.170  -0.705 -0.993 H7  8IZ 25 
8IZ H8  H8  H 0 1 N N N 77.718 -29.236 -11.890 4.192  -2.190 -1.060 H8  8IZ 26 
8IZ H9  H9  H 0 1 N N N 78.773 -28.543 -10.613 4.106  -1.008 -2.387 H9  8IZ 27 
8IZ H10 H10 H 0 1 N N N 75.678 -28.912 -9.064  1.615  -1.604 -1.570 H10 8IZ 28 
8IZ H11 H11 H 0 1 N N N 75.875 -24.536 -11.686 2.629  1.916  1.507  H11 8IZ 29 
8IZ H12 H12 H 0 1 N N N 71.615 -29.583 -9.109  -1.458 -2.980 1.609  H12 8IZ 30 
8IZ H13 H13 H 0 1 N N N 75.036 -26.298 -3.398  -4.114 3.260  -0.693 H13 8IZ 31 
8IZ H14 H14 H 0 1 N N N 71.212 -28.537 -5.625  -4.347 -1.939 -0.168 H14 8IZ 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8IZ O15 C14 DOUB N N 1  
8IZ C14 N13 SING N N 2  
8IZ C14 N16 SING N N 3  
8IZ N13 C11 SING N N 4  
8IZ C17 N16 SING N N 5  
8IZ N16 C18 SING N N 6  
8IZ C11 O12 DOUB N N 7  
8IZ C11 C10 SING N N 8  
8IZ C18 C10 DOUB N N 9  
8IZ C10 C03 SING N N 10 
8IZ O01 C02 SING N N 11 
8IZ C03 C02 SING N N 12 
8IZ C03 O04 SING N N 13 
8IZ C02 C08 SING N N 14 
8IZ O04 C05 SING N N 15 
8IZ C08 O09 SING N N 16 
8IZ C08 C05 SING N N 17 
8IZ C05 C06 SING N N 18 
8IZ C06 O07 SING N N 19 
8IZ C02 H1  SING N N 20 
8IZ C03 H2  SING N N 21 
8IZ C05 H3  SING N N 22 
8IZ C06 H4  SING N N 23 
8IZ C06 H5  SING N N 24 
8IZ C08 H6  SING N N 25 
8IZ C17 H7  SING N N 26 
8IZ C17 H8  SING N N 27 
8IZ C17 H9  SING N N 28 
8IZ C18 H10 SING N N 29 
8IZ N13 H11 SING N N 30 
8IZ O01 H12 SING N N 31 
8IZ O07 H13 SING N N 32 
8IZ O09 H14 SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8IZ InChI            InChI                1.03  "InChI=1S/C10H14N2O6/c1-12-2-4(9(16)11-10(12)17)8-7(15)6(14)5(3-13)18-8/h2,5-8,13-15H,3H2,1H3,(H,11,16,17)/t5-,6-,7-,8+/m1/s1" 
8IZ InChIKey         InChI                1.03  UVBYMVOUBXYSFV-XUTVFYLZSA-N                                                                                                    
8IZ SMILES_CANONICAL CACTVS               3.385 "CN1C=C([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)C(=O)NC1=O"                                                                          
8IZ SMILES           CACTVS               3.385 "CN1C=C([CH]2O[CH](CO)[CH](O)[CH]2O)C(=O)NC1=O"                                                                                
8IZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C=C(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O"                                                                        
8IZ SMILES           "OpenEye OEToolkits" 2.0.7 "CN1C=C(C(=O)NC1=O)C2C(C(C(O2)CO)O)O"                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           8IZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-[(2~{S},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1-methyl-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8IZ "Create component" 2021-12-17 PDBJ 
8IZ "Initial release"  2022-06-22 RCSB 
# 
